Wall clock time and date at job start Tue Mar 31 2020 21:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09007 * 112.84929 * 25.32597 * 14 13 11 16 16 C 1.53780 * 113.61669 * 156.52743 * 14 13 11 17 17 C 1.53775 * 87.08202 * 89.11383 * 16 14 13 18 18 H 1.08997 * 113.61731 * 270.88604 * 17 16 14 19 19 N 1.46904 * 113.61388 * 140.06193 * 17 16 14 20 20 C 1.46894 * 111.00062 * 154.99940 * 19 17 16 21 21 C 1.50698 * 109.47294 * 180.02562 * 20 19 17 22 22 Cl 1.73598 * 119.99839 * 294.99990 * 21 20 19 23 23 C 1.31289 * 120.00103 * 115.00579 * 21 20 19 24 24 Cl 1.73598 * 120.00058 * 359.97438 * 23 21 20 25 25 C 1.53784 * 113.61337 * 254.13435 * 14 13 11 26 26 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 28 28 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 29 29 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 30 30 H 1.09003 * 113.61044 * 203.66723 * 16 14 13 31 31 H 1.08996 * 113.61128 * 334.56309 * 16 14 13 32 32 H 1.00895 * 111.00388 * 278.95650 * 19 17 16 33 33 H 1.09003 * 109.47398 * 300.00870 * 20 19 17 34 34 H 1.09002 * 109.47077 * 60.00219 * 20 19 17 35 35 H 1.08006 * 120.00387 * 180.02562 * 23 21 20 36 36 H 1.09000 * 113.61421 * 25.43314 * 25 14 13 37 37 H 1.09008 * 113.61091 * 156.33226 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.3317 -7.7908 -0.4642 16 6 3.3248 -8.7423 -0.5997 17 6 3.8621 -8.8944 0.8331 18 1 4.6631 -8.1960 1.0755 19 7 4.1844 -10.2807 1.1967 20 6 5.1953 -10.3242 2.2616 21 6 5.5001 -11.7592 2.6066 22 17 4.2695 -12.7637 3.3067 23 6 6.6963 -12.2495 2.3779 24 17 7.9267 -11.2452 1.6773 25 6 2.4743 -8.4339 1.3182 26 1 -0.4849 0.8401 0.0004 27 1 3.1244 -3.7267 -0.9039 28 1 3.1244 -3.7361 0.8761 29 1 3.8007 -6.1835 -0.0260 30 1 2.8489 -9.6439 -0.9856 31 1 4.0475 -8.3137 -1.2939 32 1 3.3538 -10.7864 1.4658 33 1 6.1055 -9.8321 1.9188 34 1 4.8152 -9.8107 3.1447 35 1 6.9146 -13.2781 2.6248 36 1 2.5109 -7.7564 2.1712 37 1 1.7664 -9.2513 1.4556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566782943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:43 Heat of formation + Delta-G solvation = -12.906147 kcal Electronic energy + Delta-G solvation = -21045.938286 eV Core-core repulsion = 17423.257756 eV Total energy + Delta-G solvation = -3622.680530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23921 -38.49482 -37.82628 -37.11588 -35.45528 -33.24271 -32.43797 -31.75572 -29.04046 -26.15043 -25.90249 -25.48252 -23.26115 -21.14550 -20.64258 -19.47225 -17.86643 -17.09561 -16.69656 -16.36243 -16.00910 -15.68697 -15.00514 -14.81421 -14.76357 -14.32518 -13.84806 -13.50904 -13.32894 -13.14888 -12.98711 -12.78493 -12.61842 -12.55285 -12.29156 -11.94118 -11.87021 -11.74905 -11.07548 -11.06862 -11.03558 -10.93198 -10.77487 -10.55673 -9.82627 -9.54327 -9.42966 -9.08135 -8.96307 -8.74604 -8.25081 -6.51296 -6.22743 -3.93385 0.93780 1.00741 2.24756 2.99670 3.04360 3.21603 3.26984 3.30841 3.64792 3.68802 4.01516 4.19341 4.31318 4.41645 4.64337 4.70199 4.78880 4.96845 5.11804 5.12765 5.16424 5.30495 5.40165 5.48582 5.58190 5.62912 5.77215 5.79687 5.87027 5.98045 6.12000 6.48456 6.71291 6.87322 7.58512 7.68458 8.34125 8.59116 9.22592 10.84653 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.001824 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.287398 B =15348.562563 C =16088.145749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.722 5.722 14 C 0.126 3.874 15 H 0.104 0.896 16 C -0.131 4.131 17 C 0.066 3.934 18 H 0.098 0.902 19 N -0.670 5.670 20 C 0.083 3.917 21 C -0.060 4.060 22 Cl -0.053 7.053 23 C -0.089 4.089 24 Cl -0.056 7.056 25 C -0.181 4.181 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.347 0.653 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.159 0.841 36 H 0.073 0.927 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.914 -27.108 4.837 31.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.375 5.375 14 C 0.019 3.981 15 H 0.122 0.878 16 C -0.170 4.170 17 C -0.044 4.044 18 H 0.116 0.884 19 N -0.300 5.300 20 C -0.046 4.046 21 C -0.088 4.088 22 Cl -0.025 7.025 23 C -0.135 4.135 24 Cl -0.028 7.028 25 C -0.221 4.221 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.232 0.768 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.176 0.824 36 H 0.092 0.908 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.193 -27.401 4.334 30.719 hybrid contribution 1.910 1.473 0.883 2.569 sum 15.103 -25.928 5.217 30.456 Atomic orbital electron populations 1.70021 1.05946 1.27458 1.46830 1.25002 0.95041 0.99047 0.94542 0.86164 0.79397 0.81550 0.78360 1.20255 1.20750 1.19706 1.22865 0.94901 0.91645 1.58972 0.90927 1.85406 1.04881 0.96325 1.96715 1.23534 1.06613 0.95340 1.04938 1.20334 0.86554 0.86245 0.74814 1.90701 1.15375 1.85527 1.47281 1.45722 1.09706 1.04665 1.77438 1.21593 0.99244 0.81165 0.96132 0.87800 1.23423 0.98340 0.98977 0.96254 1.23206 0.95916 0.88467 0.96828 0.88385 1.60512 1.15045 1.14125 1.40355 1.21326 0.98808 0.89858 0.94583 1.23212 0.90471 0.94909 1.00245 1.98415 1.53627 1.68299 1.82146 1.24359 0.89854 0.98183 1.01118 1.98396 1.52987 1.68983 1.82415 1.24210 0.97640 1.01114 0.99160 0.92177 0.89159 0.89252 0.76829 0.88382 0.90586 0.83350 0.87648 0.92700 0.82403 0.90818 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 11 C 0.53 9.73 7.85 -10.99 -0.09 9.64 16 12 O -0.52 -11.53 15.48 5.56 0.09 -11.44 16 13 N -0.72 -9.17 5.26 -53.02 -0.28 -9.45 16 14 C 0.13 1.39 4.30 -67.12 -0.29 1.10 16 15 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 16 C -0.13 -1.08 7.62 -25.92 -0.20 -1.27 16 17 C 0.07 0.50 4.07 -66.76 -0.27 0.23 16 18 H 0.10 0.72 7.87 -51.93 -0.41 0.31 16 19 N -0.67 -4.78 6.61 -106.99 -0.71 -5.49 16 20 C 0.08 0.55 5.70 -4.98 -0.03 0.52 16 21 C -0.06 -0.38 6.06 -36.10 -0.22 -0.60 16 22 Cl -0.05 -0.34 28.64 -51.86 -1.49 -1.82 16 23 C -0.09 -0.50 10.54 28.94 0.31 -0.19 16 24 Cl -0.06 -0.36 26.97 -51.86 -1.40 -1.76 16 25 C -0.18 -1.67 7.51 -25.77 -0.19 -1.87 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.40 3.92 8.70 -40.82 -0.36 3.56 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.35 2.40 7.87 -39.29 -0.31 2.09 16 33 H 0.11 0.71 6.00 -51.93 -0.31 0.40 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.16 0.62 8.06 -52.48 -0.42 0.19 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.76 7.84 -51.92 -0.41 0.35 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -33.31 361.23 -10.09 -43.39 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.68 Total: 2.18 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.56 Total: -8.17 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.25 Total: -40.31 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -2.88 Total: -3.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.31 -10.09 -43.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.485 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds