Wall clock time and date at job start Tue Mar 31 2020 21:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09007 * 112.84929 * 25.32597 * 14 13 11 16 16 C 1.53780 * 113.61669 * 156.52743 * 14 13 11 17 17 C 1.53775 * 87.08202 * 89.11383 * 16 14 13 18 18 H 1.08997 * 113.61731 * 270.88604 * 17 16 14 19 19 N 1.46904 * 113.61388 * 140.06193 * 17 16 14 20 20 C 1.46894 * 111.00062 * 154.99940 * 19 17 16 21 21 C 1.50698 * 109.47294 * 180.02562 * 20 19 17 22 22 Cl 1.73598 * 119.99839 * 294.99990 * 21 20 19 23 23 C 1.31289 * 120.00103 * 115.00579 * 21 20 19 24 24 Cl 1.73598 * 120.00058 * 359.97438 * 23 21 20 25 25 C 1.53784 * 113.61337 * 254.13435 * 14 13 11 26 26 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 28 28 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 29 29 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 30 30 H 1.09003 * 113.61044 * 203.66723 * 16 14 13 31 31 H 1.08996 * 113.61128 * 334.56309 * 16 14 13 32 32 H 1.00895 * 111.00388 * 278.95650 * 19 17 16 33 33 H 1.09003 * 109.47398 * 300.00870 * 20 19 17 34 34 H 1.09002 * 109.47077 * 60.00219 * 20 19 17 35 35 H 1.08006 * 120.00387 * 180.02562 * 23 21 20 36 36 H 1.09000 * 113.61421 * 25.43314 * 25 14 13 37 37 H 1.09008 * 113.61091 * 156.33226 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.3317 -7.7908 -0.4642 16 6 3.3248 -8.7423 -0.5997 17 6 3.8621 -8.8944 0.8331 18 1 4.6631 -8.1960 1.0755 19 7 4.1844 -10.2807 1.1967 20 6 5.1953 -10.3242 2.2616 21 6 5.5001 -11.7592 2.6066 22 17 4.2695 -12.7637 3.3067 23 6 6.6963 -12.2495 2.3779 24 17 7.9267 -11.2452 1.6773 25 6 2.4743 -8.4339 1.3182 26 1 -0.4849 0.8401 0.0004 27 1 3.1244 -3.7267 -0.9039 28 1 3.1244 -3.7361 0.8761 29 1 3.8007 -6.1835 -0.0260 30 1 2.8489 -9.6439 -0.9856 31 1 4.0475 -8.3137 -1.2939 32 1 3.3538 -10.7864 1.4658 33 1 6.1055 -9.8321 1.9188 34 1 4.8152 -9.8107 3.1447 35 1 6.9146 -13.2781 2.6248 36 1 2.5109 -7.7564 2.1712 37 1 1.7664 -9.2513 1.4556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566782943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:43 Heat of formation + Delta-G solvation = -36.205303 kcal Electronic energy + Delta-G solvation = -21046.948613 eV Core-core repulsion = 17423.257756 eV Total energy + Delta-G solvation = -3623.690857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25417 -39.57646 -38.43845 -37.58658 -36.13296 -34.58801 -34.26296 -32.50561 -30.49716 -27.68524 -26.74008 -26.63032 -24.03378 -22.20924 -21.39667 -20.33718 -19.82573 -18.00523 -17.54766 -17.12146 -16.98753 -16.87714 -16.62050 -16.32330 -15.85624 -15.43799 -14.92593 -14.67104 -14.46539 -14.11197 -13.82880 -13.74265 -13.51787 -13.33501 -13.16565 -13.11444 -12.89007 -12.81013 -12.68848 -12.50127 -12.28558 -11.73558 -11.72446 -11.58513 -11.28773 -11.14315 -10.96083 -10.27588 -10.10231 -9.98607 -9.37829 -8.66789 -8.34749 -6.12770 0.48456 0.54522 1.26800 1.42538 1.47048 1.57391 1.59766 1.79541 2.24647 2.28864 2.99373 3.10040 3.31943 3.46755 3.59519 3.72311 3.90015 3.98804 4.05173 4.21458 4.31102 4.50127 4.50989 4.62246 4.70665 4.78287 4.83045 4.88699 4.95124 5.06511 5.12926 5.41921 5.56550 5.95933 6.19824 6.30637 6.51553 7.06578 7.25783 8.74405 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.001824 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.287398 B =15348.562563 C =16088.145749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.695 5.695 14 C 0.110 3.890 15 H 0.079 0.921 16 C -0.115 4.115 17 C 0.079 3.921 18 H 0.107 0.893 19 N -0.670 5.670 20 C 0.084 3.916 21 C -0.069 4.069 22 Cl -0.056 7.056 23 C -0.082 4.082 24 Cl -0.063 7.063 25 C -0.176 4.176 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.416 0.584 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.349 0.651 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.175 0.825 36 H 0.060 0.940 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.713 -27.879 4.922 33.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.348 5.348 14 C 0.004 3.996 15 H 0.097 0.903 16 C -0.154 4.154 17 C -0.031 4.031 18 H 0.125 0.875 19 N -0.300 5.300 20 C -0.045 4.045 21 C -0.097 4.097 22 Cl -0.027 7.027 23 C -0.128 4.128 24 Cl -0.034 7.034 25 C -0.216 4.216 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.253 0.747 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.169 0.831 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.193 0.807 36 H 0.079 0.921 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.052 -28.222 4.421 32.767 hybrid contribution 1.082 1.547 0.865 2.077 sum 17.135 -26.675 5.286 32.141 Atomic orbital electron populations 1.70189 1.07971 1.28586 1.48021 1.26146 0.95988 1.03366 0.93786 0.84947 0.78198 0.75994 0.78795 1.19306 1.20356 1.18153 1.23204 0.95352 0.91969 1.58805 0.89860 1.85594 1.10618 0.99280 1.97048 1.23372 1.03532 0.94305 1.06847 1.20074 0.86256 0.86659 0.74789 1.90690 1.17490 1.86042 1.50086 1.45426 1.10001 1.04295 1.75088 1.21789 0.99080 0.80579 0.98172 0.90278 1.23347 0.97346 0.97947 0.96786 1.23097 0.95050 0.89021 0.95965 0.87518 1.60498 1.15242 1.13522 1.40741 1.21322 0.98586 0.90236 0.94368 1.23172 0.90722 0.94801 1.01027 1.98416 1.53749 1.68320 1.82242 1.24587 0.89381 0.98703 1.00150 1.98398 1.53231 1.69313 1.82497 1.24198 0.99251 1.00809 0.97347 0.92015 0.87108 0.87196 0.74680 0.87541 0.89657 0.83115 0.87555 0.92700 0.80744 0.92149 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.55 -31.01 9.50 67.96 0.65 -30.37 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -5.03 6.16 71.23 0.44 -4.59 16 11 C 0.54 19.38 7.85 87.66 0.69 20.07 16 12 O -0.57 -26.04 15.48 -3.02 -0.05 -26.09 16 13 N -0.69 -16.63 5.26 -440.03 -2.32 -18.94 16 14 C 0.11 2.32 4.30 45.52 0.20 2.51 16 15 H 0.08 2.11 7.50 -2.38 -0.02 2.10 16 16 C -0.12 -1.62 7.62 31.12 0.24 -1.39 16 17 C 0.08 1.01 4.07 45.53 0.19 1.20 16 18 H 0.11 1.24 7.87 -2.39 -0.02 1.22 16 19 N -0.67 -8.04 6.61 -492.40 -3.25 -11.29 16 20 C 0.08 0.94 5.70 85.56 0.49 1.43 16 21 C -0.07 -0.73 6.06 25.36 0.15 -0.58 16 22 Cl -0.06 -0.62 28.64 -2.72 -0.08 -0.70 16 23 C -0.08 -0.75 10.54 67.50 0.71 -0.04 16 24 Cl -0.06 -0.69 26.97 -2.72 -0.07 -0.76 16 25 C -0.18 -3.02 7.51 31.21 0.23 -2.78 16 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 28 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 29 H 0.42 7.03 8.70 -92.71 -0.81 6.23 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.35 4.11 7.87 -89.70 -0.71 3.40 16 33 H 0.11 1.19 6.00 -2.39 -0.01 1.18 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.54 7.84 -2.38 -0.02 1.52 16 Total: -1.00 -74.33 361.23 -0.57 -74.89 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.40 Total: 16.15 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 4.44 Total: -13.41 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -5.28 Total: -85.94 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.15 Total: -1.47 kcal Total: -74.33 -0.57 -74.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.689 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds