Wall clock time and date at job start Tue Mar 31 2020 21:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00073 * 2 1 4 4 H 1.48504 * 109.47460 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47242 * 300.00145 * 3 2 1 6 6 H 1.48500 * 109.47221 * 59.99932 * 3 2 1 7 7 C 1.37874 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00165 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.39890 * 125.74090 * 267.60503 * 10 9 7 12 12 C 1.30310 * 109.21909 * 180.25960 * 11 10 9 13 13 C 1.41480 * 108.17056 * 359.78313 * 12 11 10 14 14 C 1.46726 * 126.51441 * 179.97438 * 13 12 11 15 15 O 1.21599 * 119.99955 * 180.02562 * 14 13 12 16 16 O 1.34827 * 119.99962 * 0.02562 * 14 13 12 17 17 C 1.34783 * 125.74140 * 87.47554 * 10 9 7 18 18 N 1.38363 * 126.43767 * 0.02562 * 17 10 9 19 19 C 1.34772 * 119.99696 * 273.50415 * 18 17 10 20 20 O 1.21635 * 120.00498 * 4.69905 * 19 18 17 21 21 C 1.47127 * 119.99566 * 184.69533 * 19 18 17 22 22 C 1.35140 * 122.48964 * 179.73204 * 21 19 18 23 23 S 1.76192 * 108.21281 * 179.91156 * 22 21 19 24 24 C 1.76049 * 90.16228 * 0.29614 * 23 22 21 25 25 O 1.35488 * 125.17497 * 179.86287 * 24 23 22 26 26 N 1.29245 * 109.65075 * 359.82784 * 24 23 22 27 27 H 0.96995 * 119.99738 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46466 * 60.00506 * 9 7 2 29 29 H 1.08993 * 109.47096 * 300.00628 * 9 7 2 30 30 H 1.07997 * 125.91315 * 179.79544 * 12 11 10 31 31 H 0.96703 * 117.00098 * 180.02562 * 16 14 13 32 32 H 0.96998 * 120.00043 * 93.23074 * 18 17 10 33 33 H 1.08002 * 125.89259 * 359.97438 * 22 21 19 34 34 H 0.96697 * 114.00311 * 269.95828 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.6980 -4.2646 -1.1350 12 6 3.5173 -5.2078 -0.7645 13 6 3.5896 -5.1995 0.6484 14 6 4.3944 -6.0953 1.4867 15 8 4.3669 -5.9832 2.6972 16 8 5.1646 -7.0428 0.9148 17 6 2.7513 -4.1798 1.0924 18 7 2.5198 -3.8206 2.4084 19 6 3.2466 -2.8380 2.9764 20 8 4.0460 -2.2093 2.3092 21 6 3.0730 -2.5258 4.4036 22 6 3.7785 -1.5553 5.0255 23 16 3.2736 -1.5025 6.7127 24 6 2.1450 -2.8219 6.4214 25 8 1.3311 -3.3730 7.3540 26 7 2.2104 -3.1843 5.1826 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 4.0493 -5.8792 -1.4222 31 1 5.6767 -7.6094 1.5080 32 1 1.8318 -4.2732 2.9208 33 1 4.5227 -0.9209 4.5671 34 1 1.7248 -4.1176 7.8290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:20 Heat of formation + Delta-G solvation = -28.947454 kcal Electronic energy + Delta-G solvation = -26797.507493 eV Core-core repulsion = 22632.314701 eV Total energy + Delta-G solvation = -4165.192792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24404 -40.22543 -39.25796 -38.69968 -37.18982 -35.68013 -34.58282 -33.78764 -31.75046 -30.19514 -29.24837 -27.51541 -25.78616 -24.03884 -22.97764 -22.61420 -20.63911 -20.26596 -19.65240 -19.46400 -18.13942 -17.65821 -17.40009 -16.74035 -16.34876 -16.12153 -15.77423 -15.23082 -14.89078 -14.74630 -14.55092 -14.24678 -13.87806 -13.62307 -13.51752 -12.96535 -12.94511 -12.32043 -12.18582 -12.02632 -11.81315 -11.26645 -11.07947 -11.01235 -10.80827 -10.34480 -10.19763 -9.99092 -9.92208 -9.81466 -9.75661 -9.23310 -8.98583 -8.84907 -8.67015 -8.21050 -6.29456 -4.34918 0.27706 0.77568 1.25794 1.66995 1.84106 2.54428 2.77424 3.17215 3.20780 3.28346 3.38185 3.41725 3.47581 3.56906 3.78413 4.30968 4.54492 5.02523 5.07146 5.08927 5.20776 5.44602 5.59758 5.70293 6.17460 6.32403 6.69140 6.75943 6.81321 6.81727 7.01840 7.13164 7.48387 7.56454 7.72790 7.78330 8.13207 8.31438 8.37163 8.73935 9.31758 10.79274 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.007417 B = 0.006147 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3774.201306 B = 4553.880049 C = 7378.634297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.905 3.095 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.074 0.926 9 C 0.248 3.752 10 N -0.299 5.299 11 N -0.278 5.278 12 C 0.088 3.912 13 C -0.301 4.301 14 C 0.565 3.435 15 O -0.532 6.532 16 O -0.517 6.517 17 C 0.383 3.617 18 N -0.638 5.638 19 C 0.614 3.386 20 O -0.490 6.490 21 C 0.040 3.960 22 C -0.160 4.160 23 S 0.101 5.899 24 C 0.256 3.744 25 O -0.430 6.430 26 N -0.455 5.455 27 H 0.267 0.733 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.192 0.808 31 H 0.406 0.594 32 H 0.423 0.577 33 H 0.198 0.802 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 -9.402 13.129 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.131 3.869 10 N -0.078 5.078 11 N -0.099 5.099 12 C -0.098 4.098 13 C -0.317 4.317 14 C 0.411 3.589 15 O -0.423 6.423 16 O -0.328 6.328 17 C 0.153 3.847 18 N -0.292 5.292 19 C 0.397 3.603 20 O -0.361 6.361 21 C -0.092 4.092 22 C -0.301 4.301 23 S 0.348 5.652 24 C -0.064 4.064 25 O -0.236 6.236 26 N -0.181 5.181 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.209 0.791 31 H 0.263 0.737 32 H 0.264 0.736 33 H 0.215 0.785 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 5.349 -7.236 12.272 15.217 hybrid contribution 0.950 -0.558 0.743 1.329 sum 6.299 -7.794 13.014 16.425 Atomic orbital electron populations 1.69929 1.06031 1.27648 1.49506 1.24892 0.94940 0.99481 0.94347 0.86289 0.80455 0.82300 0.77734 1.19187 1.20620 1.20713 1.21327 0.94235 0.88794 1.52447 0.90772 1.19994 0.86059 0.80554 1.00312 1.50046 1.31207 1.24717 1.01792 1.77250 1.15511 1.09467 1.07687 1.23858 0.96706 0.96452 0.92789 1.18800 1.12386 1.06627 0.93895 1.19541 0.76229 0.77554 0.85577 1.90867 1.65067 1.70796 1.15522 1.84584 1.57330 1.45675 1.45163 1.17531 0.93912 0.91733 0.81542 1.41912 1.40344 1.38834 1.08076 1.16815 0.80541 0.78747 0.84199 1.90912 1.35002 1.48298 1.61844 1.19700 0.97034 0.97261 0.95179 1.27155 1.04852 1.02281 0.95796 1.85210 1.34669 1.37096 1.08185 1.24917 0.95558 0.97086 0.88868 1.84876 1.38799 1.51232 1.48726 1.66691 1.19399 1.28606 1.03377 0.92309 0.91875 0.92903 0.79144 0.73719 0.73631 0.78526 0.73439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.82 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 8 H 0.07 2.20 7.73 -52.49 -0.41 1.79 16 9 C 0.25 6.26 6.08 -5.19 -0.03 6.23 16 10 N -0.30 -6.82 3.58 -61.14 -0.22 -7.03 16 11 N -0.28 -5.90 12.47 30.88 0.39 -5.51 16 12 C 0.09 1.56 11.86 -16.96 -0.20 1.36 16 13 C -0.30 -5.67 6.15 -104.85 -0.64 -6.31 16 14 C 0.56 9.49 8.31 34.16 0.28 9.77 16 15 O -0.53 -9.92 17.08 -19.34 -0.33 -10.25 16 16 O -0.52 -6.42 13.28 -40.84 -0.54 -6.96 16 17 C 0.38 8.00 6.48 -153.51 -0.99 7.01 16 18 N -0.64 -12.48 4.49 -12.14 -0.05 -12.53 16 19 C 0.61 12.49 7.74 -12.66 -0.10 12.39 16 20 O -0.49 -11.50 16.55 5.25 0.09 -11.41 16 21 C 0.04 0.67 6.67 -84.60 -0.56 0.11 16 22 C -0.16 -2.24 10.84 29.63 0.32 -1.92 16 23 S 0.10 1.07 23.42 -107.50 -2.52 -1.45 16 24 C 0.26 3.11 8.88 51.67 0.46 3.57 16 25 O -0.43 -3.96 13.64 -18.16 -0.25 -4.21 16 26 N -0.45 -6.93 10.02 -11.35 -0.11 -7.05 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.05 1.35 8.12 -51.93 -0.42 0.93 16 30 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 31 H 0.41 3.01 9.11 45.56 0.42 3.43 16 32 H 0.42 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.20 2.54 8.01 -52.49 -0.42 2.12 16 34 H 0.41 1.45 9.06 45.56 0.41 1.86 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -35.99 341.37 -5.32 -41.32 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -0.74 Total: 8.75 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: -1.89 Total: 18.91 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.73 Total: -56.64 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.03 Total: -32.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.52 Total: -1.45 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.99 -5.32 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.369 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds