Wall clock time and date at job start Tue Mar 31 2020 21:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00073 * 2 1 4 4 H 1.48504 * 109.47460 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47242 * 300.00145 * 3 2 1 6 6 H 1.48500 * 109.47221 * 59.99932 * 3 2 1 7 7 C 1.37874 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00165 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.39890 * 125.74090 * 267.60503 * 10 9 7 12 12 C 1.30310 * 109.21909 * 180.25960 * 11 10 9 13 13 C 1.41480 * 108.17056 * 359.78313 * 12 11 10 14 14 C 1.46726 * 126.51441 * 179.97438 * 13 12 11 15 15 O 1.21599 * 119.99955 * 180.02562 * 14 13 12 16 16 O 1.34827 * 119.99962 * 0.02562 * 14 13 12 17 17 C 1.34783 * 125.74140 * 87.47554 * 10 9 7 18 18 N 1.38363 * 126.43767 * 0.02562 * 17 10 9 19 19 C 1.34772 * 119.99696 * 273.50415 * 18 17 10 20 20 O 1.21635 * 120.00498 * 4.69905 * 19 18 17 21 21 C 1.47127 * 119.99566 * 184.69533 * 19 18 17 22 22 C 1.35140 * 122.48964 * 179.73204 * 21 19 18 23 23 S 1.76192 * 108.21281 * 179.91156 * 22 21 19 24 24 C 1.76049 * 90.16228 * 0.29614 * 23 22 21 25 25 O 1.35488 * 125.17497 * 179.86287 * 24 23 22 26 26 N 1.29245 * 109.65075 * 359.82784 * 24 23 22 27 27 H 0.96995 * 119.99738 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46466 * 60.00506 * 9 7 2 29 29 H 1.08993 * 109.47096 * 300.00628 * 9 7 2 30 30 H 1.07997 * 125.91315 * 179.79544 * 12 11 10 31 31 H 0.96703 * 117.00098 * 180.02562 * 16 14 13 32 32 H 0.96998 * 120.00043 * 93.23074 * 18 17 10 33 33 H 1.08002 * 125.89259 * 359.97438 * 22 21 19 34 34 H 0.96697 * 114.00311 * 269.95828 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.6980 -4.2646 -1.1350 12 6 3.5173 -5.2078 -0.7645 13 6 3.5896 -5.1995 0.6484 14 6 4.3944 -6.0953 1.4867 15 8 4.3669 -5.9832 2.6972 16 8 5.1646 -7.0428 0.9148 17 6 2.7513 -4.1798 1.0924 18 7 2.5198 -3.8206 2.4084 19 6 3.2466 -2.8380 2.9764 20 8 4.0460 -2.2093 2.3092 21 6 3.0730 -2.5258 4.4036 22 6 3.7785 -1.5553 5.0255 23 16 3.2736 -1.5025 6.7127 24 6 2.1450 -2.8219 6.4214 25 8 1.3311 -3.3730 7.3540 26 7 2.2104 -3.1843 5.1826 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 4.0493 -5.8792 -1.4222 31 1 5.6767 -7.6094 1.5080 32 1 1.8318 -4.2732 2.9208 33 1 4.5227 -0.9209 4.5671 34 1 1.7248 -4.1176 7.8290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:20 Heat of formation + Delta-G solvation = -60.809636 kcal Electronic energy + Delta-G solvation = -26798.889141 eV Core-core repulsion = 22632.314701 eV Total energy + Delta-G solvation = -4166.574440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.77133 -41.44249 -40.55166 -39.95767 -38.13532 -36.91499 -36.15257 -35.74866 -33.61170 -31.36557 -30.69111 -29.40308 -27.04771 -25.72867 -24.47119 -23.93243 -22.13958 -21.52869 -21.09314 -20.55335 -19.21694 -19.15389 -18.75772 -18.69949 -17.62025 -17.22451 -17.15243 -16.69618 -16.54378 -16.16571 -15.95919 -15.54340 -15.31830 -15.25902 -14.86219 -14.33275 -14.20892 -14.19336 -13.76159 -13.21111 -13.08825 -12.91164 -12.81462 -12.44387 -12.42016 -12.36371 -11.90539 -11.67783 -11.42773 -10.91037 -10.82002 -10.77081 -10.73239 -10.52887 -9.97985 -9.81938 -8.41011 -6.53689 -0.74634 -0.15342 0.07895 0.30078 0.63709 1.07717 1.23399 1.29581 1.31394 1.46791 1.94389 2.08721 2.17375 2.28896 2.32618 2.41091 2.91567 3.45449 3.66995 3.95137 4.05064 4.07827 4.19167 4.54783 4.64420 4.79538 4.87728 4.94646 5.47469 5.49784 5.67161 5.69454 5.80894 5.94158 6.20464 6.38423 6.52305 6.61233 6.87068 7.15018 7.16300 8.67644 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.007417 B = 0.006147 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3774.201306 B = 4553.880049 C = 7378.634297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.267 3.733 10 N -0.325 5.325 11 N -0.310 5.310 12 C 0.109 3.891 13 C -0.305 4.305 14 C 0.574 3.426 15 O -0.552 6.552 16 O -0.497 6.497 17 C 0.367 3.633 18 N -0.635 5.635 19 C 0.608 3.392 20 O -0.536 6.536 21 C 0.011 3.989 22 C -0.172 4.172 23 S 0.196 5.804 24 C 0.257 3.743 25 O -0.430 6.430 26 N -0.486 5.486 27 H 0.273 0.727 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.239 0.761 31 H 0.432 0.568 32 H 0.430 0.570 33 H 0.201 0.799 34 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 -9.864 14.851 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.067 0.933 9 C 0.148 3.852 10 N -0.104 5.104 11 N -0.131 5.131 12 C -0.077 4.077 13 C -0.320 4.320 14 C 0.420 3.580 15 O -0.445 6.445 16 O -0.311 6.311 17 C 0.138 3.862 18 N -0.289 5.289 19 C 0.393 3.607 20 O -0.410 6.410 21 C -0.121 4.121 22 C -0.314 4.314 23 S 0.445 5.555 24 C -0.063 4.063 25 O -0.241 6.241 26 N -0.213 5.213 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.255 0.745 31 H 0.293 0.707 32 H 0.271 0.729 33 H 0.218 0.782 34 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 6.449 -7.766 14.045 17.296 hybrid contribution 0.679 -0.565 0.350 0.950 sum 7.128 -8.331 14.394 18.094 Atomic orbital electron populations 1.69993 1.06997 1.28714 1.49799 1.25618 0.95763 1.02353 0.93817 0.85438 0.78507 0.78819 0.78625 1.20276 1.19219 1.19344 1.21320 0.93085 0.90448 1.52888 0.93266 1.19431 0.86132 0.80924 0.98664 1.49742 1.32380 1.25298 1.02946 1.77194 1.17214 1.10925 1.07795 1.24608 0.94888 0.95290 0.92900 1.19133 1.11823 1.06295 0.94784 1.19171 0.76238 0.77824 0.84793 1.90868 1.65791 1.71494 1.16343 1.84505 1.56564 1.44741 1.45251 1.18005 0.94246 0.92190 0.81714 1.42001 1.40389 1.38798 1.07691 1.17422 0.79636 0.77934 0.85677 1.90860 1.36966 1.49819 1.63367 1.19301 0.99483 0.99428 0.93847 1.27449 1.04242 1.01224 0.98468 1.84885 1.32080 1.34648 1.03934 1.25122 0.95216 0.97377 0.88604 1.84841 1.38793 1.52500 1.47960 1.66604 1.20216 1.29782 1.04724 0.91762 0.93752 0.94101 0.74510 0.70693 0.72893 0.78215 0.70392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.80 13.29 21.45 0.28 -52.51 16 2 C 0.03 1.44 5.46 84.65 0.46 1.90 16 3 Si 0.96 45.35 29.54 68.60 2.03 47.37 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 8 H 0.05 3.06 7.73 -2.91 -0.02 3.04 16 9 C 0.27 14.25 6.08 85.64 0.52 14.77 16 10 N -0.33 -15.44 3.58 -347.35 -1.24 -16.68 16 11 N -0.31 -13.38 12.47 -56.22 -0.70 -14.08 16 12 C 0.11 3.74 11.86 85.72 1.02 4.76 16 13 C -0.30 -11.36 6.15 -20.01 -0.12 -11.48 16 14 C 0.57 18.44 8.31 70.04 0.58 19.02 16 15 O -0.55 -20.18 17.08 19.51 0.33 -19.85 16 16 O -0.50 -10.78 13.28 -57.40 -0.76 -11.55 16 17 C 0.37 15.85 6.48 132.59 0.86 16.71 16 18 N -0.63 -25.96 4.49 -310.58 -1.40 -27.35 16 19 C 0.61 25.83 7.74 86.58 0.67 26.50 16 20 O -0.54 -26.44 16.55 -4.14 -0.07 -26.50 16 21 C 0.01 0.38 6.67 40.50 0.27 0.65 16 22 C -0.17 -4.75 10.84 67.11 0.73 -4.02 16 23 S 0.20 3.63 23.42 -56.49 -1.32 2.31 16 24 C 0.26 5.77 8.88 130.62 1.16 6.94 16 25 O -0.43 -6.85 13.64 -87.89 -1.20 -8.04 16 26 N -0.49 -14.73 10.02 -304.27 -3.05 -17.78 16 27 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.04 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.04 2.24 8.12 -2.39 -0.02 2.22 16 30 H 0.24 5.54 8.06 -2.91 -0.02 5.52 16 31 H 0.43 4.85 9.11 -74.06 -0.67 4.17 16 32 H 0.43 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.20 5.19 8.01 -2.91 -0.02 5.17 16 34 H 0.43 1.79 9.06 -74.06 -0.67 1.12 16 Total: -1.00 -81.05 341.37 -1.58 -82.63 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.87 Total: 17.31 kcal Atomic # 6 Polarization: 38.34 SS G_CDS: 6.39 Total: 44.73 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -6.10 Total: -128.41 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -1.70 Total: -65.95 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.32 Total: 2.31 kcal Total: -81.05 -1.58 -82.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.822 kcal (2) G-P(sol) polarization free energy of solvation -81.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds