Wall clock time and date at job start Tue Mar 31 2020 20:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47235 * 2 1 4 4 C 1.50702 * 109.47515 * 239.99560 * 2 1 3 5 5 H 1.07997 * 119.99814 * 239.99991 * 4 2 1 6 6 C 1.37872 * 119.99738 * 60.00076 * 4 2 1 7 7 N 1.31512 * 120.00260 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99940 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46866 * 59.99838 * 8 6 4 10 10 H 1.48498 * 109.47112 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47211 * 300.00092 * 8 6 4 12 12 N 1.46501 * 109.46943 * 119.99344 * 2 1 3 13 13 C 1.39076 * 120.00307 * 274.99997 * 12 2 1 14 14 C 1.38937 * 119.63692 * 0.30172 * 13 12 2 15 15 C 1.39400 * 118.96292 * 180.22310 * 14 13 12 16 16 C 1.48456 * 120.86081 * 179.75376 * 15 14 13 17 17 N 1.34054 * 126.67419 * 359.76484 * 16 15 14 18 18 N 1.28987 * 107.26852 * 179.97438 * 17 16 15 19 19 N 1.28734 * 108.94264 * 0.02562 * 18 17 16 20 20 H 0.97003 * 125.33800 * 180.26542 * 19 18 17 21 21 N 1.28874 * 109.31895 * 359.97438 * 19 18 17 22 22 C 1.39994 * 118.27598 * 359.48379 * 15 14 13 23 23 Br 1.89103 * 120.41214 * 180.29312 * 22 15 14 24 24 C 1.37904 * 119.17477 * 0.27224 * 22 15 14 25 25 N 1.32019 * 120.95736 * 359.97438 * 24 22 15 26 26 H 1.09004 * 109.46884 * 60.00785 * 1 2 3 27 27 H 1.08999 * 109.46813 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47265 * 300.00388 * 1 2 3 29 29 H 0.97003 * 120.00068 * 179.97438 * 7 6 4 30 30 H 0.97002 * 119.99941 * 95.00363 * 12 2 1 31 31 H 1.07996 * 120.51667 * 359.97438 * 14 13 12 32 32 H 1.07992 * 119.52028 * 179.97438 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 1.8260 -2.5205 -4.0075 10 1 1.8262 -0.4209 -5.2204 11 1 3.8066 -1.1212 -4.0080 12 7 2.0183 -0.6905 1.1963 13 6 2.1511 0.0034 2.3942 14 6 1.8126 1.3497 2.4496 15 6 1.9557 2.0327 3.6563 16 6 1.6117 3.4730 3.7616 17 7 1.1529 4.2606 2.7786 18 7 0.9794 5.4365 3.2795 19 7 1.3092 5.4136 4.5236 20 1 1.2673 6.1703 5.1292 21 7 1.6977 4.2262 4.8399 22 6 2.4267 1.3238 4.7678 23 35 2.6358 2.1885 6.4365 24 6 2.7358 -0.0132 4.6307 25 7 2.5931 -0.6278 3.4711 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7097 1.1616 -3.4845 30 1 2.2490 -1.6317 1.1528 31 1 1.4482 1.8602 1.5704 32 1 3.1000 -0.5653 5.4844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589788268.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:44 Heat of formation + Delta-G solvation = 172.299331 kcal Electronic energy + Delta-G solvation = -20468.936499 eV Core-core repulsion = 17128.291781 eV Total energy + Delta-G solvation = -3340.644718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.37466 -39.96159 -36.17198 -34.58464 -33.91563 -32.89489 -31.63381 -30.96786 -29.43854 -27.42483 -25.40583 -24.94165 -24.62946 -22.78006 -21.63847 -20.29069 -19.31715 -17.49848 -17.07368 -16.80991 -15.90003 -15.20299 -14.95839 -14.30640 -14.17280 -14.14078 -13.65321 -13.44059 -12.55635 -12.30567 -12.23677 -11.74936 -11.56941 -11.34127 -11.25769 -11.14323 -11.06581 -10.86670 -10.67800 -10.38365 -10.27891 -9.78600 -9.38713 -9.26812 -9.18331 -9.08034 -8.56937 -7.07932 -6.22342 -4.31801 0.75645 1.28443 1.47605 1.86370 2.29630 2.54816 3.22784 3.28151 3.29478 3.62378 3.87655 4.10551 4.22341 4.31815 4.92872 5.10577 5.20828 5.24105 5.36658 5.51334 5.93523 6.03967 6.15507 6.39928 6.56920 6.65220 6.81943 6.91129 7.23658 7.55609 7.60370 7.77149 7.99205 8.21218 8.38360 8.50362 8.78884 9.35782 10.83578 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.003621 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.372861 B = 7730.080443 C = 8957.085546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.682 5.682 13 C 0.428 3.572 14 C -0.190 4.190 15 C 0.091 3.909 16 C 0.208 3.792 17 N -0.249 5.249 18 N -0.055 5.055 19 N -0.235 5.235 20 H 0.472 0.528 21 N -0.261 5.261 22 C -0.209 4.209 23 Br -0.036 7.036 24 C 0.190 3.810 25 N -0.544 5.544 26 H 0.095 0.905 27 H 0.032 0.968 28 H 0.015 0.985 29 H 0.267 0.733 30 H 0.401 0.599 31 H 0.158 0.842 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 6.360 18.010 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.306 5.306 13 C 0.187 3.813 14 C -0.220 4.220 15 C 0.079 3.921 16 C -0.072 4.072 17 N -0.122 5.122 18 N -0.050 5.050 19 N -0.080 5.080 20 H 0.326 0.674 21 N -0.113 5.113 22 C -0.297 4.297 23 Br 0.048 6.952 24 C 0.028 3.972 25 N -0.264 5.264 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.236 0.764 31 H 0.176 0.824 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.474 6.599 17.862 19.099 hybrid contribution 0.223 0.024 -0.620 0.660 sum 1.697 6.623 17.242 18.548 Atomic orbital electron populations 1.22211 0.98027 0.99958 1.01094 1.18993 0.91199 0.93678 0.79850 0.93477 1.21081 1.32861 1.13598 0.89869 0.91832 1.24853 0.94621 0.94915 0.99063 1.69857 1.35507 1.22232 1.24330 0.86461 0.79238 0.79625 0.81559 1.20084 1.21054 1.20089 1.45733 1.65499 1.13018 1.06309 1.18552 0.87645 0.88135 0.86963 1.21636 1.07704 0.94260 0.98354 1.17035 0.96578 0.85431 0.93077 1.23481 1.01656 0.96385 0.85629 1.76209 1.15186 0.95684 1.25116 1.78935 1.15339 1.17092 0.93666 1.48013 1.40679 1.10247 1.09069 0.67404 1.75682 1.18842 0.91898 1.24868 1.22220 1.17647 0.97215 0.92592 1.96573 1.96822 1.79123 1.22707 1.22227 0.91574 0.88915 0.94460 1.67366 1.21451 1.38740 0.98805 0.88640 0.94845 0.96606 0.92293 0.76419 0.82441 0.82094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.17 37.16 0.34 -3.16 16 2 C 0.26 6.13 2.24 -69.08 -0.15 5.98 16 3 H 0.05 1.19 6.46 -51.93 -0.34 0.85 16 4 C -0.54 -13.53 8.73 -34.44 -0.30 -13.83 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -23.49 11.32 55.43 0.63 -22.86 16 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.68 -13.77 5.24 -55.08 -0.29 -14.06 16 13 C 0.43 8.09 7.63 -155.01 -1.18 6.91 16 14 C -0.19 -3.54 8.50 -38.89 -0.33 -3.87 16 15 C 0.09 1.53 5.91 -104.60 -0.62 0.91 16 16 C 0.21 3.34 7.89 -156.30 -1.23 2.11 16 17 N -0.25 -4.19 12.32 32.16 0.40 -3.79 16 18 N -0.06 -0.76 13.47 60.35 0.81 0.05 16 19 N -0.23 -2.44 7.90 60.35 0.48 -1.96 16 20 H 0.47 2.38 8.96 -340.36 -3.05 -0.67 16 21 N -0.26 -3.43 9.47 32.17 0.30 -3.13 16 22 C -0.21 -3.14 6.27 -39.05 -0.24 -3.39 16 23 Br -0.04 -0.45 30.76 -68.01 -2.09 -2.54 16 24 C 0.19 2.80 10.92 -17.59 -0.19 2.61 16 25 N -0.54 -9.42 10.38 -12.49 -0.13 -9.55 16 26 H 0.10 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.01 0.32 7.62 -51.93 -0.40 -0.08 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.40 7.71 8.66 -40.82 -0.35 7.36 16 31 H 0.16 3.17 5.96 -52.49 -0.31 2.85 16 32 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 300.27 15.07 4.52 4.52 Total: -1.00 -28.28 300.27 -9.55 -37.83 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.15 Total: 4.48 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -4.01 Total: -4.05 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 2.20 Total: -55.30 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.09 Total: -2.54 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.28 -9.55 -37.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788268.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.125 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds