Wall clock time and date at job start Tue Mar 31 2020 20:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47235 * 2 1 4 4 C 1.50702 * 109.47515 * 239.99560 * 2 1 3 5 5 H 1.07997 * 119.99814 * 239.99991 * 4 2 1 6 6 C 1.37872 * 119.99738 * 60.00076 * 4 2 1 7 7 N 1.31512 * 120.00260 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99940 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46866 * 59.99838 * 8 6 4 10 10 H 1.48498 * 109.47112 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47211 * 300.00092 * 8 6 4 12 12 N 1.46501 * 109.46943 * 119.99344 * 2 1 3 13 13 C 1.39076 * 120.00307 * 274.99997 * 12 2 1 14 14 C 1.38937 * 119.63692 * 0.30172 * 13 12 2 15 15 C 1.39400 * 118.96292 * 180.22310 * 14 13 12 16 16 C 1.48456 * 120.86081 * 179.75376 * 15 14 13 17 17 N 1.34054 * 126.67419 * 359.76484 * 16 15 14 18 18 N 1.28987 * 107.26852 * 179.97438 * 17 16 15 19 19 N 1.28734 * 108.94264 * 0.02562 * 18 17 16 20 20 H 0.97003 * 125.33800 * 180.26542 * 19 18 17 21 21 N 1.28874 * 109.31895 * 359.97438 * 19 18 17 22 22 C 1.39994 * 118.27598 * 359.48379 * 15 14 13 23 23 Br 1.89103 * 120.41214 * 180.29312 * 22 15 14 24 24 C 1.37904 * 119.17477 * 0.27224 * 22 15 14 25 25 N 1.32019 * 120.95736 * 359.97438 * 24 22 15 26 26 H 1.09004 * 109.46884 * 60.00785 * 1 2 3 27 27 H 1.08999 * 109.46813 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47265 * 300.00388 * 1 2 3 29 29 H 0.97003 * 120.00068 * 179.97438 * 7 6 4 30 30 H 0.97002 * 119.99941 * 95.00363 * 12 2 1 31 31 H 1.07996 * 120.51667 * 359.97438 * 14 13 12 32 32 H 1.07992 * 119.52028 * 179.97438 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 1.8260 -2.5205 -4.0075 10 1 1.8262 -0.4209 -5.2204 11 1 3.8066 -1.1212 -4.0080 12 7 2.0183 -0.6905 1.1963 13 6 2.1511 0.0034 2.3942 14 6 1.8126 1.3497 2.4496 15 6 1.9557 2.0327 3.6563 16 6 1.6117 3.4730 3.7616 17 7 1.1529 4.2606 2.7786 18 7 0.9794 5.4365 3.2795 19 7 1.3092 5.4136 4.5236 20 1 1.2673 6.1703 5.1292 21 7 1.6977 4.2262 4.8399 22 6 2.4267 1.3238 4.7678 23 35 2.6358 2.1885 6.4365 24 6 2.7358 -0.0132 4.6307 25 7 2.5931 -0.6278 3.4711 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7097 1.1616 -3.4845 30 1 2.2490 -1.6317 1.1528 31 1 1.4482 1.8602 1.5704 32 1 3.1000 -0.5653 5.4844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788268.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:43 Heat of formation + Delta-G solvation = 153.864175 kcal Electronic energy + Delta-G solvation = -20469.735907 eV Core-core repulsion = 17128.291781 eV Total energy + Delta-G solvation = -3341.444126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.49184 -41.31520 -37.78310 -35.81299 -35.15961 -34.57170 -32.91897 -32.27693 -31.01927 -28.87782 -27.29245 -26.24506 -25.77062 -24.15153 -23.02145 -21.91433 -20.44550 -19.04231 -18.22468 -18.17644 -17.56046 -16.79841 -16.46203 -15.80645 -15.52757 -15.41041 -15.10137 -14.80656 -14.26135 -13.92693 -13.47335 -13.20993 -13.13227 -12.84901 -12.69985 -12.59329 -12.42615 -12.39655 -12.23586 -12.09079 -11.89561 -11.13258 -10.94976 -10.77816 -10.51858 -10.44826 -10.38389 -8.54819 -8.16997 -6.33024 -0.49867 0.14799 0.17684 0.66749 1.28868 1.41211 1.46992 1.47352 1.55247 2.26315 2.46004 2.57247 2.76359 3.05262 3.13799 3.67187 3.91427 3.97817 4.01356 4.35263 4.64617 4.66981 4.73303 4.86684 4.95728 5.05893 5.26934 5.45703 5.62784 5.63720 5.81837 6.02136 6.17265 6.70136 6.84221 7.08152 7.15194 7.39435 8.87944 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.003621 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.372861 B = 7730.080443 C = 8957.085546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.277 3.723 3 H 0.020 0.980 4 C -0.550 4.550 5 H 0.065 0.935 6 C 0.024 3.976 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.691 5.691 13 C 0.417 3.583 14 C -0.212 4.212 15 C 0.091 3.909 16 C 0.190 3.810 17 N -0.287 5.287 18 N -0.057 5.057 19 N -0.198 5.198 20 H 0.495 0.505 21 N -0.248 5.248 22 C -0.204 4.204 23 Br -0.002 7.002 24 C 0.195 3.805 25 N -0.548 5.548 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.023 0.977 29 H 0.267 0.733 30 H 0.404 0.596 31 H 0.134 0.866 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 6.443 20.162 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.173 3.827 3 H 0.038 0.962 4 C -0.588 4.588 5 H 0.084 0.916 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.316 5.316 13 C 0.178 3.822 14 C -0.241 4.241 15 C 0.079 3.921 16 C -0.090 4.090 17 N -0.159 5.159 18 N -0.052 5.052 19 N -0.049 5.049 20 H 0.355 0.645 21 N -0.101 5.101 22 C -0.292 4.292 23 Br 0.082 6.918 24 C 0.034 3.966 25 N -0.267 5.267 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.239 0.761 31 H 0.152 0.848 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.187 6.707 20.062 21.266 hybrid contribution 0.031 0.178 -0.997 1.013 sum 2.217 6.885 19.065 20.391 Atomic orbital electron populations 1.22014 0.98000 0.99620 1.00263 1.18580 0.91104 0.92310 0.80658 0.96240 1.21422 1.32779 1.13708 0.90896 0.91642 1.25620 0.94810 0.95544 1.01775 1.69988 1.36536 1.23455 1.24768 0.85503 0.78619 0.78710 0.78159 1.19378 1.20949 1.19833 1.45332 1.67121 1.12985 1.06181 1.18549 0.88428 0.88181 0.87038 1.21425 1.09643 0.94422 0.98582 1.17178 0.95885 0.86081 0.92943 1.23409 1.02935 0.96393 0.86246 1.76211 1.16584 0.96711 1.26443 1.78877 1.15563 1.16116 0.94600 1.48066 1.37953 1.10269 1.08613 0.64531 1.75608 1.18372 0.92365 1.23800 1.22480 1.15739 0.97458 0.93481 1.96605 1.96596 1.78731 1.19905 1.22874 0.90226 0.89078 0.94470 1.67395 1.21226 1.39018 0.99085 0.91003 0.94724 0.95769 0.92401 0.76090 0.84838 0.78285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 9.17 71.98 0.66 -5.95 16 2 C 0.28 13.35 2.24 44.25 0.10 13.45 16 3 H 0.02 1.06 6.46 -2.38 -0.02 1.04 16 4 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 5 H 0.07 3.27 7.74 -2.91 -0.02 3.25 16 6 C 0.02 1.23 5.30 84.65 0.45 1.68 16 7 N -0.91 -49.85 11.32 21.44 0.24 -49.60 16 8 Si 0.96 41.50 29.54 68.60 2.03 43.53 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 N -0.69 -28.66 5.24 -328.19 -1.72 -30.38 16 13 C 0.42 15.99 7.63 132.99 1.01 17.00 16 14 C -0.21 -8.13 8.50 22.72 0.19 -7.93 16 15 C 0.09 3.04 5.91 -19.85 -0.12 2.92 16 16 C 0.19 5.96 7.89 137.38 1.08 7.04 16 17 N -0.29 -9.71 12.32 -52.18 -0.64 -10.35 16 18 N -0.06 -1.50 13.47 37.02 0.50 -1.00 16 19 N -0.20 -3.65 7.90 37.02 0.29 -3.36 16 20 H 0.50 3.47 8.96 -347.53 -3.12 0.35 16 21 N -0.25 -6.01 9.47 -52.13 -0.49 -6.50 16 22 C -0.20 -5.75 6.27 22.62 0.14 -5.61 16 23 Br 0.00 -0.05 30.76 -20.37 -0.63 -0.68 16 24 C 0.20 5.30 10.92 84.59 0.92 6.22 16 25 N -0.55 -18.43 10.38 -193.42 -2.01 -20.43 16 26 H 0.07 3.73 6.07 -2.38 -0.01 3.72 16 27 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.02 1.05 7.62 -2.39 -0.02 1.03 16 29 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.40 15.84 8.66 -92.71 -0.80 15.04 16 31 H 0.13 5.76 5.96 -2.91 -0.02 5.74 16 32 H 0.20 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -61.68 300.27 -0.46 -62.14 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -2.70 Total: 15.99 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 4.67 Total: 0.66 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -3.83 Total: -121.63 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.63 Total: -0.68 kcal Total: -61.68 -0.46 -62.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788268.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.004 kcal (2) G-P(sol) polarization free energy of solvation -61.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds