Wall clock time and date at job start Tue Mar 31 2020 20:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47451 * 2 1 4 4 C 1.50702 * 109.47326 * 239.99882 * 2 1 3 5 5 H 1.08001 * 119.99869 * 240.00664 * 4 2 1 6 6 C 1.37879 * 119.99614 * 60.00073 * 4 2 1 7 7 N 1.31507 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99568 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47077 * 90.00000 * 8 6 4 10 10 H 1.48498 * 109.47094 * 209.99994 * 8 6 4 11 11 H 1.48501 * 109.47372 * 330.00224 * 8 6 4 12 12 N 1.46503 * 109.47204 * 120.00023 * 2 1 3 13 13 C 1.38962 * 119.99758 * 275.00141 * 12 2 1 14 14 N 1.32435 * 119.58873 * 0.02562 * 13 12 2 15 15 C 1.31800 * 121.75949 * 179.70534 * 14 13 12 16 16 C 1.39156 * 120.70992 * 0.53820 * 15 14 13 17 17 C 1.48421 * 120.45302 * 179.75042 * 16 15 14 18 18 N 1.34058 * 126.67735 * 179.40712 * 17 16 15 19 19 N 1.28985 * 107.26690 * 180.26306 * 18 17 16 20 20 N 1.28727 * 108.95021 * 0.02562 * 19 18 17 21 21 H 0.96997 * 125.34472 * 179.97438 * 20 19 18 22 22 N 1.28871 * 109.32153 * 359.97438 * 20 19 18 23 23 C 1.39904 * 119.10010 * 359.47684 * 16 15 14 24 24 C 1.38180 * 118.39656 * 0.25084 * 23 16 15 25 25 Br 1.89094 * 120.40023 * 180.02562 * 24 23 16 26 26 H 1.09004 * 109.47381 * 300.00309 * 1 2 3 27 27 H 1.09004 * 109.47142 * 59.99809 * 1 2 3 28 28 H 1.09000 * 109.47451 * 180.02562 * 1 2 3 29 29 H 0.97006 * 119.99644 * 179.97438 * 7 6 4 30 30 H 0.96999 * 120.00387 * 94.99508 * 12 2 1 31 31 H 1.08005 * 119.64575 * 180.27022 * 15 14 13 32 32 H 1.07995 * 120.80710 * 180.27110 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 2.1510 0.0026 2.3932 14 7 1.8331 1.2873 2.4435 15 6 1.9370 1.9845 3.5572 16 6 2.3996 1.3901 4.7273 17 6 2.5195 2.1820 5.9768 18 7 2.9373 1.7365 7.1702 19 7 2.8895 2.7322 7.9887 20 7 2.4621 3.7706 7.3593 21 1 2.3346 4.6498 7.7488 22 7 2.2301 3.4590 6.1306 23 6 2.7447 0.0344 4.7113 24 6 2.6162 -0.6625 3.5250 25 35 3.0658 -2.4972 3.4395 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7096 1.1618 -3.4844 30 1 2.2490 -1.6318 1.1527 31 1 1.6642 3.0295 3.5606 32 1 3.1026 -0.4558 5.6045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589788416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:57 Heat of formation + Delta-G solvation = 164.172986 kcal Electronic energy + Delta-G solvation = -20110.623991 eV Core-core repulsion = 16769.626888 eV Total energy + Delta-G solvation = -3340.997102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.42911 -40.01203 -36.17555 -34.41455 -33.69699 -32.99731 -32.51119 -30.54969 -29.44532 -27.86822 -25.33428 -24.85535 -24.09077 -23.06456 -21.67024 -20.39012 -19.19924 -17.84994 -17.13436 -16.63503 -15.95634 -15.89575 -14.81729 -14.34107 -14.21567 -13.96977 -13.55002 -13.13014 -12.56018 -12.45197 -12.23053 -12.12507 -11.54054 -11.31513 -11.18491 -11.14213 -11.08838 -10.92758 -10.74652 -10.42239 -10.26313 -10.13240 -9.50290 -9.22931 -9.15721 -9.01298 -8.52535 -7.15131 -6.18032 -4.27185 0.86476 1.21970 1.32847 1.80510 2.22674 2.48689 3.22255 3.29325 3.31742 3.69321 3.85684 4.05216 4.23418 4.32099 4.83806 4.99450 5.14891 5.17091 5.36867 5.43848 5.66941 5.91450 6.14687 6.34255 6.48552 6.75634 6.95094 7.05454 7.30616 7.59313 7.64447 7.84424 8.08036 8.14530 8.19326 8.57294 8.83002 9.39535 10.87737 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.003765 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.007878 B = 7434.615557 C = 9018.077372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.671 5.671 13 C 0.456 3.544 14 N -0.521 5.521 15 C 0.222 3.778 16 C -0.173 4.173 17 C 0.252 3.748 18 N -0.279 5.279 19 N -0.055 5.055 20 N -0.232 5.232 21 H 0.473 0.527 22 N -0.306 5.306 23 C 0.046 3.954 24 C -0.236 4.236 25 Br -0.045 7.045 26 H 0.017 0.983 27 H 0.092 0.908 28 H 0.025 0.975 29 H 0.265 0.735 30 H 0.405 0.595 31 H 0.165 0.835 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 1.365 16.836 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.077 0.923 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.293 5.293 13 C 0.212 3.788 14 N -0.239 5.239 15 C 0.055 3.945 16 C -0.184 4.184 17 C -0.027 4.027 18 N -0.152 5.152 19 N -0.051 5.051 20 N -0.078 5.078 21 H 0.327 0.673 22 N -0.157 5.157 23 C 0.017 3.983 24 C -0.324 4.324 25 Br 0.039 6.961 26 H 0.036 0.964 27 H 0.111 0.889 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.242 0.758 31 H 0.182 0.818 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.414 1.292 16.201 16.430 hybrid contribution 0.382 -0.246 -0.233 0.510 sum 2.795 1.046 15.968 16.244 Atomic orbital electron populations 1.22092 0.98083 0.99214 1.01084 1.18959 0.91232 0.94227 0.79225 0.92337 1.21200 1.32734 1.13425 0.90260 0.92059 1.24838 0.94703 0.94906 0.98970 1.69888 1.35732 1.22287 1.23979 0.86446 0.79272 0.79318 0.82104 1.20493 1.21005 1.19784 1.46119 1.63231 1.12629 1.07292 1.18454 0.86020 0.88231 0.86136 1.67687 1.23483 1.05319 1.27403 1.22698 0.87259 0.99249 0.85317 1.17679 1.17362 0.93144 0.90207 1.23356 0.97875 0.87403 0.94088 1.76064 1.19241 1.20312 0.99612 1.78845 1.13328 0.90664 1.22227 1.47661 1.41612 1.13763 1.04729 0.67336 1.74947 1.23741 1.16392 1.00649 1.21093 0.89469 0.91650 0.96094 1.21876 1.20596 0.92911 0.97033 1.96607 1.92830 1.08049 1.98657 0.96398 0.88928 0.95560 0.92508 0.75753 0.81769 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.27 37.15 0.34 -3.11 16 2 C 0.26 6.40 2.57 -69.08 -0.18 6.22 16 3 H 0.06 1.57 7.53 -51.93 -0.39 1.18 16 4 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -23.93 11.32 55.43 0.63 -23.30 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.67 -13.82 5.16 -55.02 -0.28 -14.11 16 13 C 0.46 8.57 7.46 -154.98 -1.16 7.42 16 14 N -0.52 -9.80 9.17 -12.16 -0.11 -9.91 16 15 C 0.22 3.41 10.86 -17.22 -0.19 3.22 16 16 C -0.17 -2.49 5.89 -104.74 -0.62 -3.11 16 17 C 0.25 3.40 7.95 -156.29 -1.24 2.16 16 18 N -0.28 -3.78 12.30 32.15 0.40 -3.38 16 19 N -0.06 -0.63 13.47 60.35 0.81 0.19 16 20 N -0.23 -2.01 7.90 60.35 0.48 -1.54 16 21 H 0.47 1.71 8.96 -340.37 -3.05 -1.34 16 22 N -0.31 -3.54 12.10 32.17 0.39 -3.15 16 23 C 0.05 0.66 9.58 -38.98 -0.37 0.28 16 24 C -0.24 -3.80 6.26 -39.22 -0.25 -4.04 16 25 Br -0.05 -0.64 32.13 -68.01 -2.18 -2.83 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.40 7.86 6.90 -40.82 -0.28 7.58 16 31 H 0.17 2.15 7.88 -52.48 -0.41 1.74 16 32 H 0.15 1.87 7.96 -52.49 -0.42 1.45 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -29.07 305.91 -9.60 -38.67 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.26 Total: 2.93 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -4.05 Total: -3.48 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 2.31 Total: -55.20 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.18 Total: -2.83 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.07 -9.60 -38.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.838 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds