Wall clock time and date at job start Tue Mar 31 2020 20:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47451 * 2 1 4 4 C 1.50702 * 109.47326 * 239.99882 * 2 1 3 5 5 H 1.08001 * 119.99869 * 240.00664 * 4 2 1 6 6 C 1.37879 * 119.99614 * 60.00073 * 4 2 1 7 7 N 1.31507 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99568 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47077 * 90.00000 * 8 6 4 10 10 H 1.48498 * 109.47094 * 209.99994 * 8 6 4 11 11 H 1.48501 * 109.47372 * 330.00224 * 8 6 4 12 12 N 1.46503 * 109.47204 * 120.00023 * 2 1 3 13 13 C 1.38962 * 119.99758 * 275.00141 * 12 2 1 14 14 N 1.32435 * 119.58873 * 0.02562 * 13 12 2 15 15 C 1.31800 * 121.75949 * 179.70534 * 14 13 12 16 16 C 1.39156 * 120.70992 * 0.53820 * 15 14 13 17 17 C 1.48421 * 120.45302 * 179.75042 * 16 15 14 18 18 N 1.34058 * 126.67735 * 179.40712 * 17 16 15 19 19 N 1.28985 * 107.26690 * 180.26306 * 18 17 16 20 20 N 1.28727 * 108.95021 * 0.02562 * 19 18 17 21 21 H 0.96997 * 125.34472 * 179.97438 * 20 19 18 22 22 N 1.28871 * 109.32153 * 359.97438 * 20 19 18 23 23 C 1.39904 * 119.10010 * 359.47684 * 16 15 14 24 24 C 1.38180 * 118.39656 * 0.25084 * 23 16 15 25 25 Br 1.89094 * 120.40023 * 180.02562 * 24 23 16 26 26 H 1.09004 * 109.47381 * 300.00309 * 1 2 3 27 27 H 1.09004 * 109.47142 * 59.99809 * 1 2 3 28 28 H 1.09000 * 109.47451 * 180.02562 * 1 2 3 29 29 H 0.97006 * 119.99644 * 179.97438 * 7 6 4 30 30 H 0.96999 * 120.00387 * 94.99508 * 12 2 1 31 31 H 1.08005 * 119.64575 * 180.27022 * 15 14 13 32 32 H 1.07995 * 120.80710 * 180.27110 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 2.1510 0.0026 2.3932 14 7 1.8331 1.2873 2.4435 15 6 1.9370 1.9845 3.5572 16 6 2.3996 1.3901 4.7273 17 6 2.5195 2.1820 5.9768 18 7 2.9373 1.7365 7.1702 19 7 2.8895 2.7322 7.9887 20 7 2.4621 3.7706 7.3593 21 1 2.3346 4.6498 7.7488 22 7 2.2301 3.4590 6.1306 23 6 2.7447 0.0344 4.7113 24 6 2.6162 -0.6625 3.5250 25 35 3.0658 -2.4972 3.4395 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7096 1.1618 -3.4844 30 1 2.2490 -1.6318 1.1527 31 1 1.6642 3.0295 3.5606 32 1 3.1026 -0.4558 5.6045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:57 Heat of formation + Delta-G solvation = 145.443587 kcal Electronic energy + Delta-G solvation = -20111.436158 eV Core-core repulsion = 16769.626888 eV Total energy + Delta-G solvation = -3341.809270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.37138 -41.33131 -37.74661 -35.52284 -35.00206 -34.30143 -33.94206 -31.93394 -30.88889 -29.31104 -27.29283 -25.86665 -25.30087 -24.36309 -22.85590 -22.08485 -20.12811 -19.40004 -18.07933 -18.05847 -17.60807 -17.14675 -16.58730 -15.73169 -15.51361 -15.25821 -14.88690 -14.50601 -14.28415 -13.81912 -13.66087 -13.23097 -13.12020 -12.90433 -12.67315 -12.50997 -12.32076 -12.28741 -12.15128 -12.11315 -12.06774 -11.38042 -11.05501 -10.82374 -10.55332 -10.43828 -10.37309 -8.57842 -8.15616 -6.31595 -0.25860 0.06933 0.25537 0.57502 1.35580 1.45030 1.45975 1.50870 1.55798 2.28325 2.49673 2.73407 2.77312 3.14889 3.21430 3.57090 3.82101 3.87694 4.18625 4.38989 4.55797 4.73267 4.80601 4.96871 5.03195 5.14273 5.27852 5.50458 5.65826 5.69824 5.84126 6.05117 6.26605 6.56178 6.75588 7.19421 7.23589 7.40226 8.89618 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.003765 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.007878 B = 7434.615557 C = 9018.077372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.279 3.721 3 H 0.024 0.976 4 C -0.553 4.553 5 H 0.063 0.937 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.685 5.685 13 C 0.437 3.563 14 N -0.553 5.553 15 C 0.215 3.785 16 C -0.154 4.154 17 C 0.237 3.763 18 N -0.297 5.297 19 N -0.055 5.055 20 N -0.200 5.200 21 H 0.494 0.506 22 N -0.301 5.301 23 C 0.050 3.950 24 C -0.235 4.235 25 Br -0.028 7.028 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.408 0.592 31 H 0.184 0.816 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 1.430 18.418 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.175 3.825 3 H 0.042 0.958 4 C -0.591 4.591 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.311 5.311 13 C 0.195 3.805 14 N -0.271 5.271 15 C 0.051 3.949 16 C -0.164 4.164 17 C -0.044 4.044 18 N -0.170 5.170 19 N -0.050 5.050 20 N -0.051 5.051 21 H 0.353 0.647 22 N -0.153 5.153 23 C 0.021 3.979 24 C -0.323 4.323 25 Br 0.056 6.944 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.201 0.799 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.005 1.390 17.864 18.169 hybrid contribution 0.224 -0.109 -0.468 0.531 sum 3.229 1.280 17.396 17.740 Atomic orbital electron populations 1.21894 0.98188 0.98871 1.00067 1.18464 0.91032 0.92572 0.80383 0.95802 1.21529 1.32724 1.13545 0.91296 0.91927 1.25623 0.94870 0.95550 1.01746 1.70013 1.36685 1.23494 1.24544 0.85470 0.78854 0.78228 0.78558 1.19893 1.20883 1.19312 1.45689 1.65608 1.12676 1.07097 1.18577 0.87110 0.88555 0.86233 1.67619 1.24392 1.05886 1.29238 1.22978 0.87217 0.99892 0.84836 1.17750 1.15104 0.93212 0.90366 1.23145 0.99371 0.87969 0.93877 1.76054 1.19901 1.21317 0.99678 1.78809 1.13498 0.90847 1.21870 1.47734 1.39280 1.14355 1.03720 0.64687 1.74914 1.23087 1.15619 1.01693 1.21313 0.88815 0.91661 0.96089 1.21923 1.19875 0.93918 0.96552 1.96614 1.92643 1.06484 1.98641 0.95860 0.91297 0.95396 0.92497 0.75388 0.79899 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 9.27 71.98 0.67 -5.72 16 2 C 0.28 13.84 2.57 44.24 0.11 13.95 16 3 H 0.02 1.35 7.53 -2.39 -0.02 1.33 16 4 C -0.55 -29.11 8.73 25.60 0.22 -28.89 16 5 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -50.40 11.32 21.45 0.24 -50.16 16 8 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 N -0.69 -28.74 5.16 -327.99 -1.69 -30.43 16 13 C 0.44 16.54 7.46 133.10 0.99 17.53 16 14 N -0.55 -21.00 9.17 -192.37 -1.76 -22.77 16 15 C 0.22 6.47 10.86 84.92 0.92 7.40 16 16 C -0.15 -4.20 5.89 -19.94 -0.12 -4.32 16 17 C 0.24 5.84 7.95 137.36 1.09 6.93 16 18 N -0.30 -7.34 12.30 -52.19 -0.64 -7.98 16 19 N -0.06 -1.10 13.47 37.02 0.50 -0.60 16 20 N -0.20 -2.86 7.90 37.02 0.29 -2.57 16 21 H 0.49 1.90 8.96 -347.54 -3.12 -1.21 16 22 N -0.30 -6.16 12.10 -52.14 -0.63 -6.79 16 23 C 0.05 1.36 9.58 22.66 0.22 1.58 16 24 C -0.24 -7.37 6.26 22.51 0.14 -7.23 16 25 Br -0.03 -0.76 32.13 -20.37 -0.65 -1.41 16 26 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.07 3.67 6.07 -2.38 -0.01 3.65 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 30 H 0.41 16.03 6.90 -92.71 -0.64 15.39 16 31 H 0.18 4.61 7.88 -2.91 -0.02 4.58 16 32 H 0.17 3.87 7.96 -2.91 -0.02 3.85 16 Total: -1.00 -62.48 305.91 -0.17 -62.65 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -2.54 Total: 13.31 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 4.70 Total: 2.89 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -3.70 Total: -121.30 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -0.65 Total: -1.41 kcal Total: -62.48 -0.17 -62.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.090 kcal (2) G-P(sol) polarization free energy of solvation -62.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds