Wall clock time and date at job start Tue Mar 31 2020 20:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 120.00407 * 2 1 4 4 C 1.50697 * 109.46809 * 270.00162 * 3 2 1 5 5 H 1.08003 * 120.00338 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99800 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00057 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00003 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46872 * 90.00135 * 8 6 4 10 10 H 1.48495 * 109.47100 * 209.99977 * 8 6 4 11 11 H 1.48499 * 109.47075 * 330.00428 * 8 6 4 12 12 C 1.39074 * 119.99586 * 179.97438 * 2 1 3 13 13 C 1.38933 * 119.64353 * 5.00327 * 12 2 1 14 14 C 1.39407 * 118.97060 * 179.97438 * 13 12 2 15 15 C 1.48453 * 120.86412 * 179.97438 * 14 13 12 16 16 N 1.34058 * 126.67238 * 359.71069 * 15 14 13 17 17 N 1.28987 * 107.26354 * 179.83224 * 16 15 14 18 18 N 1.28730 * 108.94449 * 0.43600 * 17 16 15 19 19 H 0.97000 * 125.33757 * 179.68853 * 18 17 16 20 20 N 1.28869 * 109.32111 * 359.71980 * 18 17 16 21 21 C 1.39989 * 118.27257 * 0.02562 * 14 13 12 22 22 Br 1.89096 * 120.41410 * 180.02562 * 21 14 13 23 23 C 1.37912 * 119.17602 * 359.97438 * 21 14 13 24 24 N 1.32017 * 120.95941 * 0.26229 * 23 21 14 25 25 H 1.08999 * 109.47060 * 270.00633 * 1 2 3 26 26 H 1.09000 * 109.46455 * 30.00078 * 1 2 3 27 27 H 1.08998 * 109.47099 * 150.00192 * 1 2 3 28 28 H 1.08998 * 109.46738 * 29.99586 * 3 2 1 29 29 H 1.09000 * 109.46936 * 150.00094 * 3 2 1 30 30 H 0.96996 * 119.99895 * 180.02562 * 7 6 4 31 31 H 1.07998 * 120.51789 * 359.97438 * 13 12 2 32 32 H 1.08002 * 119.51747 * 179.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1271 2.8773 -1.6728 7 7 3.3467 3.2567 -2.9127 8 14 3.7341 3.9285 -0.2530 9 1 5.1072 3.5065 0.1236 10 1 3.7502 5.3551 -0.6648 11 1 2.8277 3.7595 0.9110 12 6 2.1603 -1.2045 0.0005 13 6 1.4621 -2.4010 -0.1042 14 6 2.1731 -3.6001 -0.1028 15 6 1.4697 -4.9028 -0.2120 16 7 0.1464 -5.0921 -0.3141 17 7 -0.0536 -6.3641 -0.3900 18 7 1.0808 -6.9698 -0.3306 19 1 1.2058 -7.9312 -0.3621 20 7 2.0241 -6.0986 -0.2219 21 6 3.5677 -3.5439 0.0054 22 35 4.5921 -5.1333 0.0127 23 6 4.1853 -2.3148 0.1055 24 7 3.4804 -1.1986 0.1056 25 1 -0.3633 0.0001 1.0277 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1383 0.5138 30 1 3.8242 4.0822 -3.0900 31 1 0.3852 -2.4022 -0.1855 32 1 5.2609 -2.2651 0.1896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591061891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:14 Heat of formation + Delta-G solvation = 189.723851 kcal Electronic energy + Delta-G solvation = -20421.098717 eV Core-core repulsion = 17081.209583 eV Total energy + Delta-G solvation = -3339.889134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.51191 -40.02023 -36.37089 -34.62130 -33.93037 -32.68668 -31.74660 -31.22577 -29.01963 -28.38347 -25.53449 -25.02720 -24.61203 -22.45759 -22.30114 -20.36900 -19.22047 -17.21019 -17.20483 -16.93996 -16.30452 -15.24550 -14.83412 -14.59689 -14.33595 -14.14194 -13.72900 -13.45463 -13.06531 -12.47965 -12.40715 -11.86819 -11.81397 -11.60928 -11.47576 -11.40035 -11.34326 -10.96861 -10.80534 -10.54792 -10.20826 -9.76981 -9.60104 -9.25544 -9.09784 -8.98234 -8.60816 -6.97709 -6.11064 -4.10451 0.68739 1.15096 1.45038 1.84684 2.17867 2.45947 3.27211 3.32749 3.34859 3.43617 3.66441 4.10551 4.12227 4.37073 4.83210 5.09285 5.15153 5.20154 5.25089 5.39499 5.56752 5.80089 5.86378 5.88456 6.04555 6.17506 6.27478 6.47115 6.65770 6.92309 7.50882 7.55896 7.88756 8.06525 8.42937 8.54557 8.92790 9.48368 11.02183 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.003841 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.583041 B = 7287.547704 C = 8409.561788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.575 5.575 3 C 0.220 3.780 4 C -0.530 4.530 5 H 0.074 0.926 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.435 3.565 13 C -0.209 4.209 14 C 0.092 3.908 15 C 0.211 3.789 16 N -0.258 5.258 17 N -0.057 5.057 18 N -0.233 5.233 19 H 0.473 0.527 20 N -0.258 5.258 21 C -0.205 4.205 22 Br -0.035 7.035 23 C 0.195 3.805 24 N -0.508 5.508 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.149 0.851 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -20.358 7.905 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.281 5.281 3 C 0.099 3.901 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.191 1.191 12 C 0.196 3.804 13 C -0.238 4.238 14 C 0.080 3.920 15 C -0.069 4.069 16 N -0.132 5.132 17 N -0.052 5.052 18 N -0.078 5.078 19 H 0.327 0.673 20 N -0.110 5.110 21 C -0.293 4.293 22 Br 0.049 6.951 23 C 0.032 3.968 24 N -0.226 5.226 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.166 0.834 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.523 -20.095 7.816 21.615 hybrid contribution 0.191 -0.144 0.371 0.441 sum -1.332 -20.239 8.186 21.873 Atomic orbital electron populations 1.21749 0.79205 1.03453 1.00858 1.46855 1.05084 1.03784 1.72350 1.19786 0.92580 0.79270 0.98426 1.21327 1.37057 1.07241 0.91189 0.90807 1.24837 0.95243 0.97266 0.95505 1.69897 1.41343 1.23576 1.18686 0.86862 0.80151 0.79817 0.82910 1.19786 1.21167 1.19099 1.18295 0.88038 0.86090 0.87943 1.21405 1.01656 0.89816 1.10920 1.16962 0.90082 0.87175 0.97824 1.23491 0.88047 0.92518 1.02813 1.76090 1.14533 1.05654 1.16886 1.78879 1.10337 1.00753 1.15186 1.48008 1.01789 1.12547 1.45494 0.67294 1.75737 1.16632 0.98813 1.19799 1.22320 0.93115 0.93844 1.20024 1.96581 1.69517 1.31007 1.97954 1.22422 0.99895 0.84562 0.89946 1.67451 1.06352 1.29528 1.19228 0.93256 0.90045 0.91598 0.95255 0.93655 0.92538 0.83378 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.28 59.85 0.62 2.01 16 2 N -0.58 -11.41 2.97 -183.14 -0.54 -11.96 16 3 C 0.22 5.08 4.29 -5.19 -0.02 5.06 16 4 C -0.53 -14.58 9.94 -34.44 -0.34 -14.92 16 5 H 0.07 2.27 8.06 -52.48 -0.42 1.84 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 8 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 12 C 0.43 8.32 7.37 -155.00 -1.14 7.18 16 13 C -0.21 -3.44 8.95 -38.89 -0.35 -3.79 16 14 C 0.09 1.45 5.91 -104.60 -0.62 0.83 16 15 C 0.21 3.04 7.88 -156.30 -1.23 1.81 16 16 N -0.26 -3.67 12.32 32.15 0.40 -3.28 16 17 N -0.06 -0.66 13.47 60.35 0.81 0.15 16 18 N -0.23 -2.10 7.90 60.35 0.48 -1.62 16 19 H 0.47 1.84 8.96 -340.37 -3.05 -1.21 16 20 N -0.26 -3.12 9.47 32.17 0.30 -2.82 16 21 C -0.21 -3.15 6.27 -39.05 -0.24 -3.39 16 22 Br -0.03 -0.44 30.76 -68.01 -2.09 -2.53 16 23 C 0.20 3.19 10.92 -17.59 -0.19 3.00 16 24 N -0.51 -10.04 9.06 -12.48 -0.11 -10.16 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 27 H 0.07 0.90 5.98 -51.93 -0.31 0.59 16 28 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 29 H 0.05 1.09 6.72 -51.93 -0.35 0.74 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.15 2.21 5.93 -52.49 -0.31 1.89 16 32 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 300.79 15.07 4.53 4.53 Total: -1.00 -32.84 300.79 -8.99 -41.83 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -5.25 Total: -3.84 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -3.63 Total: -0.23 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 2.11 Total: -55.92 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.09 Total: -2.53 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.84 -8.99 -41.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591061891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.557 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds