Wall clock time and date at job start Tue Mar 31 2020 20:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 120.00407 * 2 1 4 4 C 1.50697 * 109.46809 * 270.00162 * 3 2 1 5 5 H 1.08003 * 120.00338 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99800 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00057 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00003 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46872 * 90.00135 * 8 6 4 10 10 H 1.48495 * 109.47100 * 209.99977 * 8 6 4 11 11 H 1.48499 * 109.47075 * 330.00428 * 8 6 4 12 12 C 1.39074 * 119.99586 * 179.97438 * 2 1 3 13 13 C 1.38933 * 119.64353 * 5.00327 * 12 2 1 14 14 C 1.39407 * 118.97060 * 179.97438 * 13 12 2 15 15 C 1.48453 * 120.86412 * 179.97438 * 14 13 12 16 16 N 1.34058 * 126.67238 * 359.71069 * 15 14 13 17 17 N 1.28987 * 107.26354 * 179.83224 * 16 15 14 18 18 N 1.28730 * 108.94449 * 0.43600 * 17 16 15 19 19 H 0.97000 * 125.33757 * 179.68853 * 18 17 16 20 20 N 1.28869 * 109.32111 * 359.71980 * 18 17 16 21 21 C 1.39989 * 118.27257 * 0.02562 * 14 13 12 22 22 Br 1.89096 * 120.41410 * 180.02562 * 21 14 13 23 23 C 1.37912 * 119.17602 * 359.97438 * 21 14 13 24 24 N 1.32017 * 120.95941 * 0.26229 * 23 21 14 25 25 H 1.08999 * 109.47060 * 270.00633 * 1 2 3 26 26 H 1.09000 * 109.46455 * 30.00078 * 1 2 3 27 27 H 1.08998 * 109.47099 * 150.00192 * 1 2 3 28 28 H 1.08998 * 109.46738 * 29.99586 * 3 2 1 29 29 H 1.09000 * 109.46936 * 150.00094 * 3 2 1 30 30 H 0.96996 * 119.99895 * 180.02562 * 7 6 4 31 31 H 1.07998 * 120.51789 * 359.97438 * 13 12 2 32 32 H 1.08002 * 119.51747 * 179.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1271 2.8773 -1.6728 7 7 3.3467 3.2567 -2.9127 8 14 3.7341 3.9285 -0.2530 9 1 5.1072 3.5065 0.1236 10 1 3.7502 5.3551 -0.6648 11 1 2.8277 3.7595 0.9110 12 6 2.1603 -1.2045 0.0005 13 6 1.4621 -2.4010 -0.1042 14 6 2.1731 -3.6001 -0.1028 15 6 1.4697 -4.9028 -0.2120 16 7 0.1464 -5.0921 -0.3141 17 7 -0.0536 -6.3641 -0.3900 18 7 1.0808 -6.9698 -0.3306 19 1 1.2058 -7.9312 -0.3621 20 7 2.0241 -6.0986 -0.2219 21 6 3.5677 -3.5439 0.0054 22 35 4.5921 -5.1333 0.0127 23 6 4.1853 -2.3148 0.1055 24 7 3.4804 -1.1986 0.1056 25 1 -0.3633 0.0001 1.0277 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1383 0.5138 30 1 3.8242 4.0822 -3.0900 31 1 0.3852 -2.4022 -0.1855 32 1 5.2609 -2.2651 0.1896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591061891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:14 Heat of formation + Delta-G solvation = 167.370959 kcal Electronic energy + Delta-G solvation = -20422.068011 eV Core-core repulsion = 17081.209583 eV Total energy + Delta-G solvation = -3340.858428 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.48052 -41.34215 -37.80498 -35.69063 -35.01600 -34.70619 -32.91473 -32.53507 -30.58348 -29.79487 -26.98435 -26.23120 -25.65433 -24.05623 -23.55860 -21.73352 -20.21829 -19.04284 -18.47572 -18.16252 -17.71669 -16.53306 -16.33152 -16.11361 -15.78309 -15.36332 -15.07340 -14.79195 -14.47581 -14.23382 -13.58088 -13.43758 -13.18647 -12.97665 -12.70565 -12.56712 -12.43691 -12.40916 -12.33171 -12.03326 -11.85367 -11.67463 -10.89661 -10.76196 -10.55785 -10.36075 -10.31228 -8.40341 -8.26649 -6.31642 -0.46858 0.14608 0.18075 0.66287 1.31110 1.39332 1.41219 1.42610 1.51186 2.12918 2.37087 2.53267 2.79693 3.05170 3.08392 3.55761 3.89629 3.94900 4.00338 4.34497 4.36535 4.57968 4.63676 4.69064 4.81238 4.89982 4.97639 5.02252 5.33112 5.52773 5.62771 5.94737 6.28414 6.49777 6.70320 7.08591 7.16261 7.32849 8.89914 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.003841 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.583041 B = 7287.547704 C = 8409.561788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.593 5.593 3 C 0.233 3.767 4 C -0.529 4.529 5 H 0.024 0.976 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.947 3.053 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.240 1.240 12 C 0.414 3.586 13 C -0.205 4.205 14 C 0.090 3.910 15 C 0.194 3.806 16 N -0.279 5.279 17 N -0.054 5.054 18 N -0.199 5.199 19 H 0.495 0.505 20 N -0.254 5.254 21 C -0.202 4.202 22 Br -0.005 7.005 23 C 0.187 3.813 24 N -0.547 5.547 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.267 0.733 31 H 0.162 0.838 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 -22.164 9.716 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.301 5.301 3 C 0.111 3.889 4 C -0.567 4.567 5 H 0.043 0.957 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.770 3.230 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.164 1.164 12 C 0.177 3.823 13 C -0.234 4.234 14 C 0.078 3.922 15 C -0.086 4.086 16 N -0.152 5.152 17 N -0.049 5.049 18 N -0.051 5.051 19 H 0.354 0.646 20 N -0.107 5.107 21 C -0.289 4.289 22 Br 0.079 6.921 23 C 0.025 3.975 24 N -0.265 5.265 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.594 -21.981 9.641 24.055 hybrid contribution 0.228 0.094 -0.275 0.369 sum -1.366 -21.886 9.366 23.845 Atomic orbital electron populations 1.21928 0.77035 1.03723 1.02674 1.46813 1.06406 1.02930 1.73916 1.19398 0.93081 0.81287 0.95160 1.21552 1.36263 1.06518 0.92400 0.95724 1.25800 0.95447 0.98862 0.98366 1.70064 1.42973 1.24497 1.21403 0.85720 0.79888 0.77486 0.79861 1.19456 1.20851 1.16353 1.18525 0.88235 0.86602 0.88927 1.21440 1.02222 0.89226 1.10495 1.17114 0.90406 0.87768 0.96913 1.23266 0.88293 0.92530 1.04463 1.76082 1.14594 1.06764 1.17749 1.78835 1.10773 1.00121 1.15138 1.48048 1.00659 1.13411 1.42947 0.64596 1.75660 1.17168 0.98495 1.19399 1.22495 0.93435 0.94780 1.18205 1.96598 1.68675 1.29028 1.97819 1.22766 1.00717 0.84317 0.89693 1.67378 1.07144 1.31469 1.20488 0.90526 0.91003 0.90134 0.93936 0.94300 0.92455 0.82100 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.67 10.28 127.77 1.31 3.99 16 2 N -0.59 -23.62 2.97 -733.32 -2.18 -25.80 16 3 C 0.23 10.79 4.29 85.63 0.37 11.16 16 4 C -0.53 -30.04 9.94 25.60 0.25 -29.78 16 5 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 6 C 0.01 0.74 5.47 84.65 0.46 1.20 16 7 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 8 Si 0.95 43.09 27.47 68.60 1.88 44.98 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 12 C 0.41 15.92 7.37 132.98 0.98 16.90 16 13 C -0.21 -6.67 8.95 22.72 0.20 -6.46 16 14 C 0.09 2.75 5.91 -19.85 -0.12 2.63 16 15 C 0.19 5.24 7.88 137.37 1.08 6.32 16 16 N -0.28 -7.43 12.32 -52.18 -0.64 -8.07 16 17 N -0.05 -1.13 13.47 37.02 0.50 -0.63 16 18 N -0.20 -3.00 7.90 37.02 0.29 -2.71 16 19 H 0.49 2.14 8.96 -347.54 -3.12 -0.98 16 20 N -0.25 -5.49 9.47 -52.13 -0.49 -5.99 16 21 C -0.20 -5.94 6.27 22.62 0.14 -5.80 16 22 Br -0.01 -0.12 30.76 -20.37 -0.63 -0.75 16 23 C 0.19 6.02 10.92 84.59 0.92 6.94 16 24 N -0.55 -21.75 9.06 -193.40 -1.75 -23.50 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.26 8.07 -2.39 -0.02 2.25 16 27 H 0.08 2.14 5.98 -2.39 -0.01 2.13 16 28 H 0.04 1.85 7.13 -2.39 -0.02 1.84 16 29 H 0.04 1.85 6.72 -2.39 -0.02 1.84 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.16 4.66 5.93 -2.91 -0.02 4.64 16 32 H 0.18 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -72.87 300.79 0.92 -71.95 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -1.97 Total: 2.26 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.61 Total: 7.11 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -3.98 Total: -125.54 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.98 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.63 Total: -0.75 kcal Total: -72.87 0.92 -71.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591061891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.319 kcal (2) G-P(sol) polarization free energy of solvation -72.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds