Wall clock time and date at job start Tue Mar 31 2020 20:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46728 * 180.02562 * 10 9 7 12 12 C 1.35919 * 117.00019 * 179.97438 * 11 10 9 13 13 C 1.38823 * 119.98296 * 359.72619 * 12 11 10 14 14 C 1.38200 * 120.18550 * 179.72457 * 13 12 11 15 15 C 1.38163 * 120.16663 * 0.55239 * 14 13 12 16 16 Br 1.89102 * 120.01275 * 179.70550 * 15 14 13 17 17 C 1.39367 * 119.97298 * 359.71866 * 15 14 13 18 18 C 1.48460 * 120.09901 * 179.97438 * 17 15 14 19 19 N 1.34049 * 126.67851 * 179.70701 * 18 17 15 20 20 N 1.28981 * 107.26874 * 179.87364 * 19 18 17 21 21 N 1.28734 * 108.94716 * 0.40223 * 20 19 18 22 22 H 0.96997 * 125.34576 * 179.76820 * 21 20 19 23 23 N 1.28879 * 109.31614 * 359.74384 * 21 20 19 24 24 C 1.38495 * 119.98791 * 179.97438 * 12 11 10 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.07999 * 119.90723 * 359.97438 * 13 12 11 31 31 H 1.07998 * 119.91435 * 180.24784 * 14 13 12 32 32 H 1.08002 * 120.08647 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5307 -4.8997 0.0032 12 6 2.2709 -6.0396 0.0036 13 6 3.6572 -5.9666 -0.0022 14 6 4.4140 -7.1229 0.0039 15 6 3.7947 -8.3580 0.0044 16 35 4.8345 -9.9375 0.0044 17 6 2.4034 -8.4393 0.0046 18 6 1.7351 -9.7649 0.0045 19 7 0.4146 -9.9959 0.0102 20 7 0.2497 -11.2751 0.0051 21 7 1.4038 -11.8454 0.0051 22 1 1.5564 -12.8033 0.0050 23 7 2.3248 -10.9438 0.0048 24 6 1.6419 -7.2735 0.0047 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 4.1457 -5.0034 -0.0075 31 1 5.4922 -7.0610 0.0034 32 1 0.5634 -7.3314 0.0056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:40 Heat of formation + Delta-G solvation = 111.849333 kcal Electronic energy + Delta-G solvation = -19650.470468 eV Core-core repulsion = 16274.911691 eV Total energy + Delta-G solvation = -3375.558777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.57096 -40.05054 -37.59956 -34.51006 -33.73219 -33.40050 -31.93264 -30.89958 -30.26433 -28.42353 -25.40691 -24.80835 -24.43596 -22.48899 -21.71182 -20.64336 -19.34696 -18.06650 -17.27310 -16.36941 -15.93267 -15.70544 -15.52369 -15.00811 -14.52593 -14.33381 -13.76826 -13.46563 -13.28647 -12.51151 -12.36537 -12.10562 -11.99892 -11.58036 -11.54062 -11.45981 -11.05974 -10.99830 -10.90214 -10.62486 -10.50127 -9.85883 -9.81475 -9.72351 -9.36885 -8.97179 -8.48434 -8.06646 -6.13670 -4.19102 0.49094 1.05054 1.16616 1.55171 2.10602 2.22062 3.26601 3.28035 3.32034 3.35550 3.57777 3.72630 4.09257 4.38049 4.67134 4.86842 5.08319 5.20810 5.22826 5.32536 5.39114 5.75919 5.80272 5.90087 5.91369 6.05634 6.21157 6.27426 6.44378 6.57707 7.40056 7.57875 7.68757 7.91659 8.00565 8.17873 8.86182 9.45628 10.97732 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.022785 B = 0.002609 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.606482 B =10728.751540 C =11936.909575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.061 3.939 11 O -0.305 6.305 12 C 0.163 3.837 13 C -0.189 4.189 14 C -0.050 4.050 15 C -0.114 4.114 16 Br -0.031 7.031 17 C 0.044 3.956 18 C 0.210 3.790 19 N -0.258 5.258 20 N -0.054 5.054 21 N -0.233 5.233 22 H 0.473 0.527 23 N -0.264 5.264 24 C -0.115 4.115 25 H 0.265 0.735 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.471 -24.960 0.004 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.013 4.013 11 O -0.218 6.218 12 C 0.115 3.885 13 C -0.209 4.209 14 C -0.070 4.070 15 C -0.196 4.196 16 Br 0.055 6.945 17 C 0.039 3.961 18 C -0.069 4.069 19 N -0.131 5.131 20 N -0.049 5.049 21 N -0.079 5.079 22 H 0.327 0.673 23 N -0.116 5.116 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.948 -25.797 0.008 27.304 hybrid contribution 0.902 1.032 -0.001 1.371 sum 9.850 -24.764 0.007 26.651 Atomic orbital electron populations 1.69958 1.06112 1.27195 1.49347 1.24983 0.94900 0.99391 0.94820 0.86545 0.79508 0.82586 0.78729 1.20074 1.21102 1.20069 1.20911 0.93007 0.90142 1.52706 0.92357 1.19136 0.94144 0.88816 0.99089 1.23483 0.97338 0.80414 1.00024 1.86247 1.36371 1.13079 1.86065 1.19045 0.89965 0.87680 0.91837 1.21584 0.93065 0.99940 1.06325 1.20788 1.00331 0.89555 0.96309 1.21508 0.92416 0.93004 1.12639 1.96658 1.68448 1.31790 1.97617 1.16690 0.89999 0.86909 1.02497 1.23487 0.87806 0.92807 1.02839 1.76124 1.15282 1.04663 1.17080 1.78897 1.09319 1.01756 1.14929 1.48032 1.01673 1.12343 1.45818 0.67316 1.75816 1.17420 0.97834 1.20537 1.20383 1.01322 0.87994 1.03999 0.92566 0.95232 0.95240 0.92647 0.92661 0.83634 0.84240 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.63 5.34 -27.88 -0.15 0.48 16 10 C 0.06 1.20 4.68 37.16 0.17 1.37 16 11 O -0.31 -5.74 10.13 -19.49 -0.20 -5.94 16 12 C 0.16 2.55 6.68 -39.27 -0.26 2.29 16 13 C -0.19 -2.53 9.03 -39.38 -0.36 -2.89 16 14 C -0.05 -0.59 9.77 -39.62 -0.39 -0.97 16 15 C -0.11 -1.42 6.25 -39.19 -0.24 -1.67 16 16 Br -0.03 -0.33 30.52 -68.01 -2.08 -2.41 16 17 C 0.04 0.60 5.88 -104.89 -0.62 -0.01 16 18 C 0.21 2.77 7.85 -156.30 -1.23 1.54 16 19 N -0.26 -3.53 12.23 32.16 0.39 -3.14 16 20 N -0.05 -0.60 13.47 60.35 0.81 0.21 16 21 N -0.23 -1.92 7.90 60.35 0.48 -1.44 16 22 H 0.47 1.51 8.96 -340.36 -3.05 -1.54 16 23 N -0.26 -2.90 9.26 32.17 0.30 -2.60 16 24 C -0.12 -1.69 9.64 -39.11 -0.38 -2.07 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.01 7.67 -51.93 -0.40 0.62 16 29 H 0.06 1.01 7.64 -51.93 -0.40 0.61 16 30 H 0.15 1.82 6.28 -52.49 -0.33 1.49 16 31 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.15 2.19 7.89 -52.49 -0.41 1.78 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -31.00 306.18 -9.22 -40.22 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -5.40 Total: -5.24 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -3.86 Total: -14.85 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 2.72 Total: -32.14 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.20 Total: -5.94 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.08 Total: -2.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.00 -9.22 -40.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.071 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds