Wall clock time and date at job start Tue Mar 31 2020 20:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46728 * 180.02562 * 10 9 7 12 12 C 1.35919 * 117.00019 * 179.97438 * 11 10 9 13 13 C 1.38823 * 119.98296 * 359.72619 * 12 11 10 14 14 C 1.38200 * 120.18550 * 179.72457 * 13 12 11 15 15 C 1.38163 * 120.16663 * 0.55239 * 14 13 12 16 16 Br 1.89102 * 120.01275 * 179.70550 * 15 14 13 17 17 C 1.39367 * 119.97298 * 359.71866 * 15 14 13 18 18 C 1.48460 * 120.09901 * 179.97438 * 17 15 14 19 19 N 1.34049 * 126.67851 * 179.70701 * 18 17 15 20 20 N 1.28981 * 107.26874 * 179.87364 * 19 18 17 21 21 N 1.28734 * 108.94716 * 0.40223 * 20 19 18 22 22 H 0.96997 * 125.34576 * 179.76820 * 21 20 19 23 23 N 1.28879 * 109.31614 * 359.74384 * 21 20 19 24 24 C 1.38495 * 119.98791 * 179.97438 * 12 11 10 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.07999 * 119.90723 * 359.97438 * 13 12 11 31 31 H 1.07998 * 119.91435 * 180.24784 * 14 13 12 32 32 H 1.08002 * 120.08647 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5307 -4.8997 0.0032 12 6 2.2709 -6.0396 0.0036 13 6 3.6572 -5.9666 -0.0022 14 6 4.4140 -7.1229 0.0039 15 6 3.7947 -8.3580 0.0044 16 35 4.8345 -9.9375 0.0044 17 6 2.4034 -8.4393 0.0046 18 6 1.7351 -9.7649 0.0045 19 7 0.4146 -9.9959 0.0102 20 7 0.2497 -11.2751 0.0051 21 7 1.4038 -11.8454 0.0051 22 1 1.5564 -12.8033 0.0050 23 7 2.3248 -10.9438 0.0048 24 6 1.6419 -7.2735 0.0047 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 4.1457 -5.0034 -0.0075 31 1 5.4922 -7.0610 0.0034 32 1 0.5634 -7.3314 0.0056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:40 Heat of formation + Delta-G solvation = 92.329654 kcal Electronic energy + Delta-G solvation = -19651.316905 eV Core-core repulsion = 16274.911691 eV Total energy + Delta-G solvation = -3376.405214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.46513 -41.23515 -38.84107 -35.51095 -35.38936 -34.58937 -33.11759 -32.09585 -31.75240 -29.57375 -27.04458 -25.72957 -25.67485 -23.63398 -23.12391 -21.99880 -20.26469 -19.32948 -18.23925 -18.15820 -17.13527 -16.97566 -16.84488 -16.52644 -15.98607 -15.32157 -14.77307 -14.67532 -14.57158 -14.29332 -13.68182 -13.57316 -13.14728 -12.94054 -12.72887 -12.55821 -12.45027 -12.39868 -12.16867 -11.99134 -11.90518 -11.57964 -11.37884 -11.17935 -10.70478 -10.57370 -9.98301 -9.20138 -8.22898 -6.36247 -0.51706 0.09978 0.16820 0.58134 1.21181 1.41531 1.44734 1.47826 1.55651 2.14112 2.44374 2.51496 2.66432 3.12178 3.12865 3.65892 3.84305 4.02175 4.19342 4.32653 4.33404 4.34093 4.44624 4.70616 4.77921 4.81827 5.03265 5.19962 5.32767 5.44699 5.52281 5.63473 5.74586 6.09654 6.42409 6.79392 7.09897 7.34085 8.89939 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.022785 B = 0.002609 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.606482 B =10728.751540 C =11936.909575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.026 3.974 10 C 0.079 3.921 11 O -0.331 6.331 12 C 0.138 3.862 13 C -0.184 4.184 14 C -0.040 4.040 15 C -0.114 4.114 16 Br -0.009 7.009 17 C 0.039 3.961 18 C 0.195 3.805 19 N -0.290 5.290 20 N -0.057 5.057 21 N -0.201 5.201 22 H 0.494 0.506 23 N -0.258 5.258 24 C -0.124 4.124 25 H 0.266 0.734 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.312 -26.077 0.003 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.093 0.907 9 C -0.011 4.011 10 C 0.005 3.995 11 O -0.245 6.245 12 C 0.091 3.909 13 C -0.204 4.204 14 C -0.059 4.059 15 C -0.196 4.196 16 Br 0.077 6.923 17 C 0.034 3.966 18 C -0.085 4.085 19 N -0.162 5.162 20 N -0.051 5.051 21 N -0.052 5.052 22 H 0.353 0.647 23 N -0.111 5.111 24 C -0.145 4.145 25 H 0.074 0.926 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.175 0.825 31 H 0.189 0.811 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.801 -26.967 0.006 29.436 hybrid contribution 0.034 1.104 0.000 1.105 sum 11.834 -25.863 0.006 28.442 Atomic orbital electron populations 1.70115 1.08095 1.28209 1.50759 1.26021 0.95742 1.03658 0.94307 0.85376 0.78111 0.77363 0.79467 1.18776 1.21197 1.18768 1.21398 0.93999 0.90892 1.51899 0.90666 1.18977 0.94668 0.91403 0.96099 1.23044 0.95526 0.79454 1.01507 1.86157 1.37328 1.13637 1.87365 1.19197 0.91004 0.86606 0.94099 1.21727 0.91963 1.01201 1.05548 1.21111 1.01718 0.88490 0.94618 1.21766 0.92246 0.94318 1.11265 1.96677 1.67467 1.30695 1.97488 1.16771 0.90626 0.86817 1.02362 1.23461 0.87835 0.93198 1.03963 1.76118 1.15950 1.05770 1.18353 1.78843 1.09976 1.01166 1.15162 1.48081 1.00618 1.13212 1.43275 0.64697 1.75747 1.17684 0.97490 1.20216 1.20335 1.01143 0.88337 1.04700 0.92553 0.98325 0.98334 0.91060 0.91066 0.82468 0.81066 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.54 -29.43 9.11 25.60 0.23 -29.19 16 8 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.03 1.34 5.34 29.85 0.16 1.50 16 10 C 0.08 3.10 4.68 71.98 0.34 3.44 16 11 O -0.33 -12.84 10.13 -92.64 -0.94 -13.78 16 12 C 0.14 4.33 6.68 22.47 0.15 4.48 16 13 C -0.18 -4.63 9.03 22.40 0.20 -4.43 16 14 C -0.04 -0.83 9.77 22.24 0.22 -0.61 16 15 C -0.11 -2.62 6.25 22.52 0.14 -2.48 16 16 Br -0.01 -0.17 30.52 -20.37 -0.62 -0.79 16 17 C 0.04 1.05 5.88 -20.04 -0.12 0.93 16 18 C 0.20 4.97 7.85 137.38 1.08 6.05 16 19 N -0.29 -7.85 12.23 -52.18 -0.64 -8.49 16 20 N -0.06 -1.20 13.47 37.02 0.50 -0.71 16 21 N -0.20 -2.91 7.90 37.02 0.29 -2.62 16 22 H 0.49 1.86 8.96 -347.53 -3.12 -1.26 16 23 N -0.26 -5.18 9.26 -52.13 -0.48 -5.66 16 24 C -0.12 -3.69 9.64 22.57 0.22 -3.48 16 25 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.07 2.55 7.67 -2.39 -0.02 2.54 16 29 H 0.07 2.55 7.64 -2.39 -0.02 2.53 16 30 H 0.16 3.55 6.28 -2.91 -0.02 3.53 16 31 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.14 4.39 7.89 -2.91 -0.02 4.36 16 Total: -1.00 -68.33 306.18 1.57 -66.76 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -1.93 Total: -0.18 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.08 Total: -23.26 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -0.05 Total: -73.15 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.94 Total: -13.78 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.62 Total: -0.79 kcal Total: -68.33 1.57 -66.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.091 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds