Wall clock time and date at job start Tue Mar 31 2020 20:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00308 * 2 1 4 4 H 1.48502 * 109.47139 * 269.99573 * 3 2 1 5 5 H 1.48496 * 109.47184 * 29.99696 * 3 2 1 6 6 H 1.48498 * 109.47103 * 149.99793 * 3 2 1 7 7 C 1.37879 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00339 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47397 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99970 * 263.16843 * 10 9 7 12 12 C 1.53000 * 109.47053 * 268.47912 * 11 10 9 13 13 F 1.39897 * 109.47182 * 59.99801 * 12 11 10 14 14 F 1.39894 * 109.46962 * 180.02562 * 12 11 10 15 15 F 1.39904 * 109.46725 * 299.99885 * 12 11 10 16 16 C 1.34780 * 119.99876 * 83.16319 * 10 9 7 17 17 O 1.21596 * 119.99874 * 183.63653 * 16 10 9 18 18 C 1.47513 * 119.99924 * 3.64085 * 16 10 9 19 19 C 1.36873 * 122.55122 * 173.10693 * 18 16 10 20 20 S 1.71036 * 108.89162 * 179.97438 * 19 18 16 21 21 C 1.75988 * 90.57573 * 0.02562 * 20 19 18 22 22 C 1.47359 * 125.22556 * 179.97438 * 21 20 19 23 23 O 1.21510 * 120.00253 * 180.02562 * 22 21 20 24 24 O 1.34787 * 120.00076 * 0.02562 * 22 21 20 25 25 N 1.29936 * 109.54625 * 0.23636 * 21 20 19 26 26 H 0.96995 * 119.99443 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47026 * 59.99712 * 9 7 2 28 28 H 1.09000 * 109.47037 * 299.99959 * 9 7 2 29 29 H 1.09004 * 109.47223 * 28.47655 * 11 10 9 30 30 H 1.09005 * 109.46839 * 148.47775 * 11 10 9 31 31 H 1.08001 * 125.54924 * 0.02562 * 19 18 16 32 32 H 0.96697 * 117.00387 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.5642 -4.2677 -1.2592 12 6 1.6249 -5.4497 -1.5072 13 9 0.3059 -4.9894 -1.5823 14 9 1.9702 -6.0753 -2.7098 15 9 1.7401 -6.3654 -0.4557 16 6 2.7464 -4.0347 1.1595 17 8 3.5858 -4.9145 1.1526 18 6 2.3228 -3.4294 2.4362 19 6 2.7348 -3.9079 3.6506 20 16 2.0399 -2.9521 4.8871 21 6 1.2276 -1.9560 3.6850 22 6 0.3513 -0.8093 3.9830 23 8 -0.1632 -0.1859 3.0758 24 8 0.1204 -0.4521 5.2620 25 7 1.5147 -2.3903 2.4946 26 1 -0.4849 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.4744 -3.5542 -2.0784 30 1 3.5919 -4.6262 -1.2006 31 1 3.3923 -4.7510 3.8031 32 1 -0.4616 0.3063 5.4078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:48 Heat of formation + Delta-G solvation = -223.679411 kcal Electronic energy + Delta-G solvation = -28134.109768 eV Core-core repulsion = 23386.323273 eV Total energy + Delta-G solvation = -4747.786495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -51.08299 -48.60330 -48.57005 -41.79218 -40.88775 -39.50233 -37.01709 -36.94893 -34.46418 -32.03737 -31.08765 -28.72267 -27.85543 -25.89618 -24.82820 -23.83964 -21.69938 -20.53480 -19.97586 -19.52632 -19.31458 -18.81806 -18.53542 -18.09900 -17.86492 -17.33998 -16.93433 -16.63128 -16.27798 -16.07575 -15.51675 -15.45673 -15.24645 -15.01777 -14.78439 -14.74383 -14.70807 -14.59654 -14.22887 -14.12699 -13.63137 -13.41299 -13.16251 -12.89812 -12.79623 -12.62157 -12.52266 -12.10585 -11.80552 -11.67034 -11.25385 -10.80615 -10.50664 -10.16987 -9.99381 -9.66243 -7.97882 -6.02225 -0.93907 0.09361 0.41472 0.53842 1.38322 1.40917 1.47512 1.57293 1.63250 1.78331 2.01194 2.35529 2.51372 2.87602 3.04346 3.26037 3.38964 3.39649 3.88067 4.00512 4.15913 4.33123 4.38023 4.55812 4.79920 5.48381 5.57137 5.74892 5.88190 6.25748 6.29550 6.43857 6.94223 7.02363 7.06018 7.60624 9.09317 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.005954 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.096232 B = 4701.775402 C = 6344.816975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.047 3.953 3 Si 0.929 3.071 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.039 0.961 9 C 0.250 3.750 10 N -0.588 5.588 11 C 0.076 3.924 12 C 0.438 3.562 13 F -0.189 7.189 14 F -0.177 7.177 15 F -0.187 7.187 16 C 0.592 3.408 17 O -0.560 6.560 18 C -0.023 4.023 19 C -0.193 4.193 20 S 0.349 5.651 21 C -0.053 4.053 22 C 0.552 3.448 23 O -0.483 6.483 24 O -0.496 6.496 25 N -0.342 5.342 26 H 0.256 0.744 27 H 0.012 0.988 28 H 0.067 0.933 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.220 0.780 32 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 -6.569 10.350 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.156 4.156 3 Si 0.757 3.243 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.058 0.942 9 C 0.130 3.870 10 N -0.316 5.316 11 C -0.049 4.049 12 C 0.382 3.618 13 F -0.171 7.171 14 F -0.158 7.158 15 F -0.169 7.169 16 C 0.379 3.621 17 O -0.440 6.440 18 C -0.163 4.163 19 C -0.336 4.336 20 S 0.605 5.395 21 C -0.326 4.326 22 C 0.389 3.611 23 O -0.367 6.367 24 O -0.312 6.312 25 N -0.060 5.060 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.237 0.763 32 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges 3.094 -6.729 10.699 13.012 hybrid contribution -0.098 1.090 -1.279 1.683 sum 2.996 -5.639 9.420 11.380 Atomic orbital electron populations 1.69953 1.06565 1.26645 1.49073 1.25169 0.95073 1.00406 0.94966 0.86028 0.78591 0.81734 0.77951 1.20109 1.21693 1.20429 1.21107 0.91899 0.91109 1.51845 0.94227 1.19728 0.87192 0.81616 0.98474 1.48064 1.44887 1.34058 1.04631 1.22673 0.99084 0.92775 0.90415 1.21389 0.81134 0.85421 0.73820 1.93189 1.39174 1.88709 1.95999 1.93163 1.91924 1.84275 1.46466 1.93175 1.95928 1.69612 1.58142 1.17452 0.80522 0.80977 0.83157 1.90708 1.33496 1.32559 1.87264 1.20359 1.03380 0.97277 0.95330 1.27842 1.03863 1.06130 0.95775 1.83222 1.34032 1.16443 1.05847 1.26111 1.09338 1.04574 0.92547 1.19127 0.78670 0.81826 0.81461 1.91166 1.46537 1.51422 1.47559 1.84390 1.67368 1.53770 1.25646 1.67047 1.08569 1.07747 1.22657 0.93451 0.96973 0.91598 0.84430 0.84842 0.76294 0.69558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.08 13.29 21.45 0.28 -50.80 16 2 C 0.05 2.56 5.46 84.65 0.46 3.02 16 3 Si 0.93 44.49 29.54 68.60 2.03 46.52 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.52 -27.79 8.17 25.60 0.21 -27.58 16 8 H 0.04 2.16 7.81 -2.91 -0.02 2.14 16 9 C 0.25 12.40 4.52 85.63 0.39 12.78 16 10 N -0.59 -24.87 2.40 -829.91 -1.99 -26.85 16 11 C 0.08 2.65 5.42 86.38 0.47 3.12 16 12 C 0.44 14.93 3.29 71.98 0.24 15.16 16 13 F -0.19 -7.16 16.54 44.97 0.74 -6.42 16 14 F -0.18 -5.35 17.32 44.97 0.78 -4.57 16 15 F -0.19 -6.80 16.22 44.97 0.73 -6.07 16 16 C 0.59 24.37 7.11 86.69 0.62 24.99 16 17 O -0.56 -22.87 15.73 -4.02 -0.06 -22.93 16 18 C -0.02 -0.88 6.49 41.28 0.27 -0.61 16 19 C -0.19 -5.16 10.67 67.50 0.72 -4.44 16 20 S 0.35 7.53 23.02 -56.49 -1.30 6.23 16 21 C -0.05 -1.81 7.43 87.38 0.65 -1.17 16 22 C 0.55 18.80 8.33 70.22 0.59 19.39 16 23 O -0.48 -21.65 17.85 19.80 0.35 -21.29 16 24 O -0.50 -10.59 13.29 -56.98 -0.76 -11.34 16 25 N -0.34 -14.34 5.70 -179.14 -1.02 -15.36 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.01 0.65 7.55 -2.39 -0.02 0.63 16 28 H 0.07 3.56 5.28 -2.39 -0.01 3.55 16 29 H 0.14 4.40 8.06 -2.39 -0.02 4.38 16 30 H 0.13 4.17 7.42 -2.38 -0.02 4.15 16 31 H 0.22 4.55 8.03 -2.91 -0.02 4.53 16 32 H 0.44 5.28 9.11 -74.06 -0.67 4.60 16 Total: -1.00 -73.29 320.66 4.95 -68.34 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 0.56 Total: -0.11 kcal Atomic # 6 Polarization: 40.06 SS G_CDS: 4.60 Total: 44.66 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -2.72 Total: -93.02 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -0.47 Total: -55.57 kcal Atomic # 9 Polarization: -19.31 SS G_CDS: 2.25 Total: -17.05 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 7.53 SS G_CDS: -1.30 Total: 6.23 kcal Total: -73.29 4.95 -68.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.335 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds