Wall clock time and date at job start Tue Mar 31 2020 20:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48505 * 109.47277 * 270.00050 * 3 2 1 5 5 H 1.48499 * 109.47156 * 29.99804 * 3 2 1 6 6 H 1.48497 * 109.46986 * 149.99964 * 3 2 1 7 7 C 1.38946 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00338 * 201.13233 * 7 2 1 9 9 N 1.37102 * 119.99722 * 21.13515 * 7 2 1 10 10 C 1.46491 * 120.00325 * 16.25890 * 9 7 2 11 11 C 1.50700 * 109.47251 * 264.14378 * 10 9 7 12 12 O 1.20830 * 119.99809 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99943 * 179.97438 * 11 10 9 14 14 C 1.34781 * 119.99672 * 196.25608 * 9 7 2 15 15 O 1.21294 * 120.00169 * 0.02562 * 14 9 7 16 16 C 1.50702 * 119.99968 * 179.97438 * 14 9 7 17 17 C 1.50699 * 109.47015 * 180.02562 * 16 14 9 18 18 N 1.29029 * 124.91262 * 90.00597 * 17 16 14 19 19 C 1.31783 * 117.12411 * 179.97438 * 18 17 16 20 20 C 1.50689 * 122.75182 * 179.97438 * 19 18 17 21 21 F 1.39896 * 109.47317 * 5.02150 * 20 19 18 22 22 F 1.39905 * 109.47467 * 245.02379 * 20 19 18 23 23 F 1.39898 * 109.47453 * 125.02523 * 20 19 18 24 24 C 1.33644 * 114.49819 * 0.22710 * 19 18 17 25 25 S 1.70974 * 124.91683 * 269.99802 * 17 16 14 26 26 H 0.97003 * 120.00322 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47166 * 24.14437 * 10 9 7 28 28 H 1.09000 * 109.47298 * 144.14488 * 10 9 7 29 29 H 0.96701 * 116.99399 * 179.97438 * 13 11 10 30 30 H 1.09002 * 109.46940 * 60.00474 * 16 14 9 31 31 H 1.08999 * 109.46688 * 300.00514 * 16 14 9 32 32 H 1.07996 * 126.03903 * 179.76269 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0344 -1.2346 0.3377 9 7 1.3925 -2.3509 -0.4271 10 6 0.1549 -2.2708 -1.2067 11 6 -1.0289 -2.4276 -0.2874 12 8 -0.8564 -2.5892 0.8975 13 8 -2.2750 -2.3867 -0.7849 14 6 1.9254 -3.5527 -0.1302 15 8 2.9499 -3.6191 0.5157 16 6 1.2476 -4.8142 -0.5997 17 6 2.0389 -6.0110 -0.1387 18 7 1.8616 -6.6267 0.9813 19 6 2.6422 -7.6590 1.2296 20 6 2.5452 -8.4683 2.4971 21 9 1.4588 -8.0189 3.2553 22 9 3.7233 -8.3195 3.2367 23 9 2.3634 -9.8177 2.1761 24 6 3.5305 -7.9262 0.2675 25 16 3.3014 -6.7496 -1.0240 26 1 -0.4851 0.8400 -0.0004 27 1 0.1018 -1.3031 -1.7057 28 1 0.1433 -3.0654 -1.9527 29 1 -3.0022 -2.4924 -0.1564 30 1 1.1913 -4.8128 -1.6882 31 1 0.2412 -4.8622 -0.1838 32 1 4.2591 -8.7232 0.2790 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:38 Heat of formation + Delta-G solvation = -208.826019 kcal Electronic energy + Delta-G solvation = -27121.283889 eV Core-core repulsion = 22374.141485 eV Total energy + Delta-G solvation = -4747.142403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.13214 -47.68825 -47.55335 -40.05806 -39.44157 -38.19752 -35.37681 -34.62610 -32.68677 -31.78330 -29.10787 -27.77407 -26.93977 -25.05342 -23.16092 -21.25293 -20.39882 -19.42604 -18.80125 -18.54343 -18.07994 -17.27748 -17.04052 -16.71724 -16.51376 -15.77935 -15.16769 -14.89286 -14.58861 -14.53179 -14.37470 -14.27672 -14.05297 -13.97599 -13.79163 -13.74711 -13.72427 -13.13872 -12.83790 -12.51410 -12.18137 -11.80019 -11.72417 -11.58493 -11.47591 -11.03831 -10.50191 -10.44009 -10.41082 -9.75687 -9.73272 -9.56145 -9.19697 -9.14229 -8.68191 -8.05055 -6.55315 -4.00294 0.46569 1.13003 1.49694 2.39745 2.59545 3.06718 3.19539 3.24632 3.33747 3.50255 3.54428 3.93476 4.05379 4.14786 4.36363 4.38929 4.65999 4.92479 4.93128 5.04874 5.28009 5.42855 5.64933 5.79464 5.85134 6.33381 6.47409 7.41527 7.46246 7.53113 7.81913 8.23172 8.92757 8.96065 9.16455 9.65769 10.53385 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.003508 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.804259 B = 7979.538193 C = 8355.950198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.031 3.969 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.110 0.890 9 N -0.426 5.426 10 C 0.142 3.858 11 C 0.485 3.515 12 O -0.499 6.499 13 O -0.534 6.534 14 C 0.464 3.536 15 O -0.564 6.564 16 C -0.070 4.070 17 C 0.102 3.898 18 N -0.441 5.441 19 C -0.016 4.016 20 C 0.546 3.454 21 F -0.161 7.161 22 F -0.171 7.171 23 F -0.174 7.174 24 C -0.221 4.221 25 S 0.193 5.807 26 H 0.273 0.727 27 H 0.133 0.867 28 H 0.078 0.922 29 H 0.394 0.606 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 -13.193 -6.480 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.128 0.872 9 N -0.145 5.145 10 C 0.015 3.985 11 C 0.325 3.675 12 O -0.384 6.384 13 O -0.345 6.345 14 C 0.251 3.749 15 O -0.447 6.447 16 C -0.114 4.114 17 C -0.178 4.178 18 N -0.154 5.154 19 C -0.152 4.152 20 C 0.489 3.511 21 F -0.142 7.142 22 F -0.152 7.152 23 F -0.156 7.156 24 C -0.362 4.362 25 S 0.452 5.548 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.096 0.904 29 H 0.250 0.750 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.597 -12.686 -6.696 14.434 hybrid contribution -0.497 0.323 1.655 1.758 sum 1.100 -12.364 -5.041 13.397 Atomic orbital electron populations 1.69790 1.06069 1.28127 1.47951 1.25258 0.95351 1.00077 0.96544 0.85822 0.79515 0.80417 0.78390 1.20159 1.21021 1.19304 1.19748 0.97697 0.82932 1.42852 0.87234 1.43408 1.19574 1.05099 1.46432 1.20763 0.81349 1.05121 0.91266 1.23799 0.83252 0.71189 0.89248 1.90659 1.85557 1.44554 1.17607 1.84509 1.17377 1.86346 1.46300 1.19482 0.87779 0.83452 0.84200 1.90581 1.25906 1.86061 1.42130 1.20431 0.99992 0.89079 1.01852 1.26319 0.98846 1.00145 0.92464 1.65771 1.26160 1.06031 1.17393 1.19847 0.99256 0.98846 0.97246 1.17251 0.74283 0.76977 0.82583 1.93244 1.54737 1.88831 1.77360 1.93232 1.48017 1.95494 1.78491 1.93205 1.95126 1.34413 1.92820 1.26827 1.05013 1.06121 0.98274 1.83893 1.31127 1.20150 1.19677 0.91700 0.84946 0.90395 0.74978 0.87548 0.86814 0.79533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.21 9.25 55.50 0.51 -21.70 16 2 C 0.03 0.77 4.89 -17.47 -0.09 0.68 16 3 Si 0.93 19.84 29.60 -169.99 -5.03 14.81 16 4 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.31 -8.04 9.35 -14.93 -0.14 -8.18 16 8 H 0.11 3.05 7.36 -52.49 -0.39 2.66 16 9 N -0.43 -10.11 2.18 -116.10 -0.25 -10.37 16 10 C 0.14 2.83 4.97 -5.20 -0.03 2.80 16 11 C 0.49 10.19 5.87 36.01 0.21 10.40 16 12 O -0.50 -12.68 16.81 -18.75 -0.32 -12.99 16 13 O -0.53 -8.99 13.42 -39.26 -0.53 -9.52 16 14 C 0.46 10.70 7.41 -10.98 -0.08 10.62 16 15 O -0.56 -15.05 15.67 5.54 0.09 -14.96 16 16 C -0.07 -1.22 4.89 -29.03 -0.14 -1.36 16 17 C 0.10 1.75 5.88 -13.46 -0.08 1.67 16 18 N -0.44 -8.29 10.14 -8.06 -0.08 -8.37 16 19 C -0.02 -0.25 6.16 -84.23 -0.52 -0.77 16 20 C 0.55 8.11 3.39 36.00 0.12 8.23 16 21 F -0.16 -2.68 17.01 2.25 0.04 -2.65 16 22 F -0.17 -2.50 17.30 2.25 0.04 -2.47 16 23 F -0.17 -2.24 17.22 2.25 0.04 -2.20 16 24 C -0.22 -2.80 11.05 29.12 0.32 -2.48 16 25 S 0.19 2.51 23.18 -107.50 -2.49 0.02 16 26 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 27 H 0.13 2.75 6.34 -51.93 -0.33 2.43 16 28 H 0.08 1.17 6.69 -51.93 -0.35 0.82 16 29 H 0.39 5.11 9.10 45.56 0.41 5.52 16 30 H 0.11 1.36 7.42 -51.93 -0.39 0.98 16 31 H 0.11 2.02 7.52 -51.93 -0.39 1.62 16 32 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -34.22 317.76 -4.59 -38.82 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -0.98 Total: 5.17 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: -0.42 Total: 21.62 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.18 Total: -40.43 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.76 Total: -37.47 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.12 Total: -7.32 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.49 Total: 0.02 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.22 -4.59 -38.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.011 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds