Wall clock time and date at job start Tue Mar 31 2020 20:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48505 * 109.47277 * 270.00050 * 3 2 1 5 5 H 1.48499 * 109.47156 * 29.99804 * 3 2 1 6 6 H 1.48497 * 109.46986 * 149.99964 * 3 2 1 7 7 C 1.38946 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00338 * 201.13233 * 7 2 1 9 9 N 1.37102 * 119.99722 * 21.13515 * 7 2 1 10 10 C 1.46491 * 120.00325 * 16.25890 * 9 7 2 11 11 C 1.50700 * 109.47251 * 264.14378 * 10 9 7 12 12 O 1.20830 * 119.99809 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99943 * 179.97438 * 11 10 9 14 14 C 1.34781 * 119.99672 * 196.25608 * 9 7 2 15 15 O 1.21294 * 120.00169 * 0.02562 * 14 9 7 16 16 C 1.50702 * 119.99968 * 179.97438 * 14 9 7 17 17 C 1.50699 * 109.47015 * 180.02562 * 16 14 9 18 18 N 1.29029 * 124.91262 * 90.00597 * 17 16 14 19 19 C 1.31783 * 117.12411 * 179.97438 * 18 17 16 20 20 C 1.50689 * 122.75182 * 179.97438 * 19 18 17 21 21 F 1.39896 * 109.47317 * 5.02150 * 20 19 18 22 22 F 1.39905 * 109.47467 * 245.02379 * 20 19 18 23 23 F 1.39898 * 109.47453 * 125.02523 * 20 19 18 24 24 C 1.33644 * 114.49819 * 0.22710 * 19 18 17 25 25 S 1.70974 * 124.91683 * 269.99802 * 17 16 14 26 26 H 0.97003 * 120.00322 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47166 * 24.14437 * 10 9 7 28 28 H 1.09000 * 109.47298 * 144.14488 * 10 9 7 29 29 H 0.96701 * 116.99399 * 179.97438 * 13 11 10 30 30 H 1.09002 * 109.46940 * 60.00474 * 16 14 9 31 31 H 1.08999 * 109.46688 * 300.00514 * 16 14 9 32 32 H 1.07996 * 126.03903 * 179.76269 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0344 -1.2346 0.3377 9 7 1.3925 -2.3509 -0.4271 10 6 0.1549 -2.2708 -1.2067 11 6 -1.0289 -2.4276 -0.2874 12 8 -0.8564 -2.5892 0.8975 13 8 -2.2750 -2.3867 -0.7849 14 6 1.9254 -3.5527 -0.1302 15 8 2.9499 -3.6191 0.5157 16 6 1.2476 -4.8142 -0.5997 17 6 2.0389 -6.0110 -0.1387 18 7 1.8616 -6.6267 0.9813 19 6 2.6422 -7.6590 1.2296 20 6 2.5452 -8.4683 2.4971 21 9 1.4588 -8.0189 3.2553 22 9 3.7233 -8.3195 3.2367 23 9 2.3634 -9.8177 2.1761 24 6 3.5305 -7.9262 0.2675 25 16 3.3014 -6.7496 -1.0240 26 1 -0.4851 0.8400 -0.0004 27 1 0.1018 -1.3031 -1.7057 28 1 0.1433 -3.0654 -1.9527 29 1 -3.0022 -2.4924 -0.1564 30 1 1.1913 -4.8128 -1.6882 31 1 0.2412 -4.8622 -0.1838 32 1 4.2591 -8.7232 0.2790 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:36 Heat of formation + Delta-G solvation = -233.591563 kcal Electronic energy + Delta-G solvation = -27122.357803 eV Core-core repulsion = 22374.141485 eV Total energy + Delta-G solvation = -4748.216318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -51.27615 -48.78976 -48.75622 -41.44340 -40.92380 -39.87025 -37.04608 -36.36443 -34.15111 -33.47020 -30.46224 -29.42973 -28.04039 -26.81224 -24.48980 -22.84472 -21.71914 -20.76698 -20.12535 -19.67767 -19.25290 -19.02665 -18.69462 -18.20641 -17.81563 -17.39710 -16.68693 -16.33118 -16.15444 -15.89250 -15.78247 -15.56685 -15.33155 -15.28884 -15.19376 -14.91953 -14.90367 -14.49749 -14.19482 -13.93603 -13.72462 -13.51482 -13.37474 -13.02703 -12.65799 -12.64463 -12.36064 -12.17102 -12.10541 -11.52757 -10.95457 -10.93385 -10.77965 -10.48978 -10.17303 -9.89435 -8.44421 -5.96366 -0.63539 0.09288 0.36619 1.18917 1.36570 1.44767 1.47438 1.55972 1.69445 1.84668 2.24644 2.41100 2.55407 2.86545 2.95598 3.09425 3.25749 3.26136 3.75624 3.95738 4.00701 4.13385 4.33637 4.43962 4.60635 4.78399 4.94685 5.46243 5.97264 5.98359 6.35553 6.40207 7.08079 7.27422 7.45730 7.86339 8.61913 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.003508 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.804259 B = 7979.538193 C = 8355.950198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.002 3.998 3 Si 0.991 3.009 4 H -0.255 1.255 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.439 5.439 10 C 0.137 3.863 11 C 0.493 3.507 12 O -0.552 6.552 13 O -0.517 6.517 14 C 0.456 3.544 15 O -0.613 6.613 16 C -0.059 4.059 17 C 0.054 3.946 18 N -0.482 5.482 19 C -0.051 4.051 20 C 0.550 3.450 21 F -0.177 7.177 22 F -0.172 7.172 23 F -0.161 7.161 24 C -0.200 4.200 25 S 0.272 5.728 26 H 0.275 0.725 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.413 0.587 30 H 0.156 0.844 31 H 0.107 0.893 32 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -14.067 -8.723 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.200 4.200 3 Si 0.816 3.184 4 H -0.180 1.180 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.158 5.158 10 C 0.012 3.988 11 C 0.335 3.665 12 O -0.441 6.441 13 O -0.329 6.329 14 C 0.244 3.756 15 O -0.498 6.498 16 C -0.102 4.102 17 C -0.224 4.224 18 N -0.196 5.196 19 C -0.186 4.186 20 C 0.493 3.507 21 F -0.159 7.159 22 F -0.153 7.153 23 F -0.143 7.143 24 C -0.342 4.342 25 S 0.530 5.470 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.272 0.728 30 H 0.173 0.827 31 H 0.125 0.875 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.726 -13.561 -8.987 16.360 hybrid contribution -0.558 0.521 2.328 2.450 sum 1.168 -13.040 -6.659 14.688 Atomic orbital electron populations 1.69876 1.06753 1.28779 1.47647 1.25928 0.96113 1.02279 0.95671 0.84960 0.77604 0.76733 0.79150 1.17991 1.20931 1.20579 1.19612 0.97180 0.84938 1.44847 0.90240 1.43561 1.20674 1.04807 1.46733 1.21000 0.79602 1.06771 0.91411 1.23952 0.84436 0.69659 0.88462 1.90650 1.86465 1.47182 1.19794 1.84443 1.16721 1.85418 1.46350 1.20403 0.87117 0.84884 0.83171 1.90531 1.28097 1.87071 1.44143 1.20332 0.98853 0.86420 1.04591 1.26308 1.01382 1.01019 0.93654 1.65696 1.27917 1.07249 1.18711 1.19964 1.00772 0.99406 0.98497 1.17203 0.73767 0.77435 0.82301 1.93203 1.55655 1.89163 1.77834 1.93225 1.47940 1.95571 1.78571 1.93223 1.95035 1.33347 1.92666 1.27409 1.03741 1.06072 0.96932 1.83525 1.27769 1.18055 1.17645 0.91504 0.85717 0.84963 0.72758 0.82691 0.87472 0.75520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.93 9.25 21.66 0.20 -44.73 16 2 C 0.00 0.09 4.89 84.93 0.42 0.51 16 3 Si 0.99 40.89 29.60 68.60 2.03 42.92 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.34 -18.32 9.35 84.04 0.79 -17.53 16 8 H 0.08 4.67 7.36 -2.91 -0.02 4.65 16 9 N -0.44 -21.04 2.18 -639.61 -1.39 -22.43 16 10 C 0.14 5.32 4.97 85.63 0.43 5.75 16 11 C 0.49 20.30 5.87 71.24 0.42 20.72 16 12 O -0.55 -28.42 16.81 21.95 0.37 -28.06 16 13 O -0.52 -16.39 13.42 -51.44 -0.69 -17.09 16 14 C 0.46 21.23 7.41 87.66 0.65 21.88 16 15 O -0.61 -33.72 15.67 -3.07 -0.05 -33.77 16 16 C -0.06 -2.00 4.89 29.10 0.14 -1.85 16 17 C 0.05 1.82 5.88 88.52 0.52 2.34 16 18 N -0.48 -18.07 10.14 -179.41 -1.82 -19.89 16 19 C -0.05 -1.58 6.16 41.52 0.26 -1.33 16 20 C 0.55 16.05 3.39 71.23 0.24 16.29 16 21 F -0.18 -6.05 17.01 44.97 0.76 -5.29 16 22 F -0.17 -4.93 17.30 44.97 0.78 -4.15 16 23 F -0.16 -3.93 17.22 44.97 0.77 -3.16 16 24 C -0.20 -4.51 11.05 66.78 0.74 -3.77 16 25 S 0.27 6.28 23.18 -56.49 -1.31 4.98 16 26 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 27 H 0.13 5.05 6.34 -2.38 -0.02 5.04 16 28 H 0.13 3.56 6.69 -2.39 -0.02 3.54 16 29 H 0.41 9.94 9.10 -74.06 -0.67 9.27 16 30 H 0.16 3.47 7.42 -2.39 -0.02 3.46 16 31 H 0.11 3.75 7.52 -2.39 -0.02 3.73 16 32 H 0.23 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -78.54 317.76 4.82 -73.73 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.56 Total: 13.94 kcal Atomic # 6 Polarization: 38.41 SS G_CDS: 4.59 Total: 43.00 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -3.01 Total: -87.06 kcal Atomic # 8 Polarization: -78.54 SS G_CDS: -0.37 Total: -78.91 kcal Atomic # 9 Polarization: -14.92 SS G_CDS: 2.32 Total: -12.60 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.31 Total: 4.98 kcal Total: -78.54 4.82 -73.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.863 kcal (2) G-P(sol) polarization free energy of solvation -78.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds