Wall clock time and date at job start Tue Mar 31 2020 20:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86806 * 120.00029 * 2 1 4 4 H 1.48498 * 109.47262 * 269.99814 * 3 2 1 5 5 H 1.48496 * 109.46848 * 30.00069 * 3 2 1 6 6 H 1.48502 * 109.47114 * 150.00015 * 3 2 1 7 7 C 1.38972 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00218 * 183.40334 * 7 2 1 9 9 N 1.36961 * 119.99518 * 3.40235 * 7 2 1 10 10 C 1.46491 * 120.00357 * 312.73779 * 9 7 2 11 11 C 1.52998 * 109.47540 * 264.48445 * 10 9 7 12 12 C 1.50695 * 109.47738 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99801 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00506 * 180.02562 * 12 11 10 15 15 C 1.34775 * 119.99660 * 132.73831 * 9 7 2 16 16 O 1.21694 * 120.00186 * 184.66665 * 15 9 7 17 17 C 1.46998 * 120.00166 * 4.67188 * 15 9 7 18 18 N 1.33587 * 122.68779 * 354.75325 * 17 15 9 19 19 C 1.28894 * 115.93625 * 179.97438 * 18 17 15 20 20 Cl 1.73598 * 125.12333 * 180.02562 * 19 18 17 21 21 S 1.75939 * 109.75271 * 359.73846 * 19 18 17 22 22 C 1.36303 * 122.68738 * 174.73205 * 17 15 9 23 23 Cl 1.73598 * 125.52249 * 0.02562 * 22 17 15 24 24 H 0.96997 * 120.00054 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47235 * 24.48423 * 10 9 7 26 26 H 1.09010 * 109.47534 * 144.48370 * 10 9 7 27 27 H 1.09003 * 109.47278 * 300.00406 * 11 10 9 28 28 H 1.09001 * 109.47205 * 59.99839 * 11 10 9 29 29 H 0.96704 * 117.00589 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0091 -1.2035 -0.0005 8 1 3.0876 -1.2043 0.0550 9 7 1.3260 -2.3885 -0.0715 10 6 0.1679 -2.6195 0.7953 11 6 0.6104 -3.3830 2.0452 12 6 -0.5810 -3.6212 2.9366 13 8 -1.6722 -3.2209 2.6064 14 8 -0.4300 -4.2771 4.0980 15 6 1.7195 -3.3421 -0.9388 16 8 1.0638 -4.3598 -1.0629 17 6 2.9407 -3.1531 -1.7348 18 7 3.6445 -2.0178 -1.7178 19 6 4.6941 -1.9939 -2.4655 20 17 5.7772 -0.6465 -2.6237 21 16 4.8683 -3.5355 -3.2953 22 6 3.4460 -4.1224 -2.5491 23 17 2.7610 -5.7000 -2.7846 24 1 -0.4850 0.8400 0.0004 25 1 -0.2635 -1.6623 1.0881 26 1 -0.5779 -3.2048 0.2572 27 1 1.0419 -4.3402 1.7525 28 1 1.3561 -2.7978 2.5834 29 1 -1.2231 -4.4054 4.6361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071694.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:05 Heat of formation + Delta-G solvation = -69.885164 kcal Electronic energy + Delta-G solvation = -22438.070113 eV Core-core repulsion = 18541.252598 eV Total energy + Delta-G solvation = -3896.817515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.98441 -39.66626 -37.86082 -36.84582 -36.46914 -35.78049 -35.00168 -31.97270 -30.69953 -29.68177 -25.85498 -25.12372 -23.72528 -21.64139 -20.29266 -19.34953 -18.76398 -17.77976 -17.03416 -16.12547 -16.00824 -15.63035 -15.34310 -14.96538 -14.51176 -14.31481 -14.16513 -13.57137 -13.07427 -12.70715 -12.56931 -12.38008 -12.18133 -11.79810 -11.45716 -11.22885 -11.18470 -11.12493 -11.07302 -10.89507 -10.77324 -10.35894 -10.11314 -10.07801 -9.52899 -9.28964 -9.03882 -8.62990 -8.46157 -7.52646 -6.34052 -4.15602 0.44810 0.54816 1.43515 1.81043 2.39471 2.48631 2.68643 3.17746 3.24101 3.26365 3.43588 4.06233 4.23992 4.48953 4.87596 5.07836 5.41003 5.60898 5.80226 5.96937 6.23220 6.33925 6.82305 6.88544 7.35022 7.55905 7.62354 7.85839 8.32087 8.42143 9.02615 9.28535 9.72739 10.64925 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.005680 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.438589 B = 4928.036917 C = 7096.654787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.047 3.953 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.316 4.316 8 H 0.112 0.888 9 N -0.411 5.411 10 C 0.122 3.878 11 C -0.126 4.126 12 C 0.484 3.516 13 O -0.512 6.512 14 O -0.525 6.525 15 C 0.527 3.473 16 O -0.577 6.577 17 C 0.076 3.924 18 N -0.358 5.358 19 C 0.073 3.927 20 Cl 0.028 6.972 21 S 0.197 5.803 22 C -0.171 4.171 23 Cl 0.035 6.965 24 H 0.272 0.728 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.687 -4.756 -1.968 10.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.159 4.159 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.445 4.445 8 H 0.129 0.871 9 N -0.127 5.127 10 C -0.002 4.002 11 C -0.164 4.164 12 C 0.326 3.674 13 O -0.399 6.399 14 O -0.337 6.337 15 C 0.313 3.687 16 O -0.461 6.461 17 C -0.061 4.061 18 N -0.074 5.074 19 C -0.232 4.232 20 Cl 0.055 6.945 21 S 0.446 5.554 22 C -0.322 4.322 23 Cl 0.063 6.937 24 H 0.082 0.918 25 H 0.150 0.850 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 9.833 -4.859 -2.742 11.306 hybrid contribution -0.817 0.823 0.778 1.397 sum 9.016 -4.037 -1.964 10.072 Atomic orbital electron populations 1.69683 1.06162 1.27916 1.46601 1.25571 0.95281 0.99967 0.95106 0.86042 0.79575 0.81068 0.78824 1.19922 1.21081 1.19025 1.19926 0.92620 0.81421 1.50569 0.87090 1.43328 1.26408 1.13695 1.29311 1.21497 0.88367 1.02871 0.87420 1.21861 0.94429 1.03750 0.96406 1.23708 0.91153 0.73168 0.79359 1.90711 1.28496 1.47844 1.72890 1.84587 1.43962 1.71674 1.33467 1.17305 0.84046 0.86083 0.81238 1.90744 1.55637 1.30390 1.69338 1.20838 0.98764 0.86482 0.99995 1.67770 1.02117 1.22060 1.15456 1.28395 0.98310 0.94432 1.02083 1.98414 1.58438 1.41526 1.96117 1.83724 1.19990 1.08043 1.43642 1.26345 1.02550 0.96163 1.07166 1.98380 1.82866 1.17245 1.95176 0.91758 0.85042 0.91614 0.88592 0.87784 0.74128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.84 10.93 55.50 0.61 -22.23 15 2 C 0.05 1.16 5.35 -17.46 -0.09 1.07 15 3 Si 0.92 19.81 29.55 -169.99 -5.02 14.79 15 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 5 H -0.29 -6.13 7.11 56.52 0.40 -5.72 15 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 7 C -0.32 -7.80 7.60 -14.99 -0.11 -7.91 15 8 H 0.11 2.69 6.00 -52.49 -0.32 2.38 15 9 N -0.41 -10.07 2.52 -116.18 -0.29 -10.36 15 10 C 0.12 2.87 4.18 -4.05 -0.02 2.85 15 11 C -0.13 -2.43 6.10 -27.89 -0.17 -2.60 15 12 C 0.48 8.80 8.33 36.00 0.30 9.10 15 13 O -0.51 -10.87 16.74 -18.75 -0.31 -11.19 15 14 O -0.53 -7.43 13.42 -39.25 -0.53 -7.96 15 15 C 0.53 12.62 7.56 -12.71 -0.10 12.52 15 16 O -0.58 -14.32 14.55 5.19 0.08 -14.24 15 17 C 0.08 1.59 6.54 -84.25 -0.55 1.04 15 18 N -0.36 -7.24 7.02 -8.02 -0.06 -7.30 15 19 C 0.07 1.19 8.26 51.53 0.43 1.62 15 20 Cl 0.03 0.38 29.33 -51.86 -1.52 -1.14 15 21 S 0.20 2.69 23.18 -107.50 -2.49 0.20 15 22 C -0.17 -3.04 6.97 30.04 0.21 -2.83 15 23 Cl 0.03 0.58 27.23 -51.86 -1.41 -0.83 15 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 25 H 0.13 3.39 5.40 -51.93 -0.28 3.11 15 26 H 0.07 1.66 7.49 -51.92 -0.39 1.27 15 27 H 0.10 1.82 8.14 -51.93 -0.42 1.39 15 28 H 0.10 1.91 8.14 -51.93 -0.42 1.49 15 29 H 0.40 3.74 9.10 45.56 0.41 4.15 15 LS Contribution 309.29 15.07 4.66 4.66 Total: -1.00 -29.91 309.29 -6.95 -36.86 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -0.55 Total: 3.88 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -0.11 Total: 14.85 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.26 Total: -39.89 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.77 Total: -33.39 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.49 Total: 0.20 kcal Atomic # 17 Polarization: 0.97 SS G_CDS: -2.93 Total: -1.97 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.91 -6.95 -36.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071694.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.022 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds