Wall clock time and date at job start Tue Mar 31 2020 20:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86806 * 120.00029 * 2 1 4 4 H 1.48498 * 109.47262 * 269.99814 * 3 2 1 5 5 H 1.48496 * 109.46848 * 30.00069 * 3 2 1 6 6 H 1.48502 * 109.47114 * 150.00015 * 3 2 1 7 7 C 1.38972 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00218 * 183.40334 * 7 2 1 9 9 N 1.36961 * 119.99518 * 3.40235 * 7 2 1 10 10 C 1.46491 * 120.00357 * 312.73779 * 9 7 2 11 11 C 1.52998 * 109.47540 * 264.48445 * 10 9 7 12 12 C 1.50695 * 109.47738 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99801 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00506 * 180.02562 * 12 11 10 15 15 C 1.34775 * 119.99660 * 132.73831 * 9 7 2 16 16 O 1.21694 * 120.00186 * 184.66665 * 15 9 7 17 17 C 1.46998 * 120.00166 * 4.67188 * 15 9 7 18 18 N 1.33587 * 122.68779 * 354.75325 * 17 15 9 19 19 C 1.28894 * 115.93625 * 179.97438 * 18 17 15 20 20 Cl 1.73598 * 125.12333 * 180.02562 * 19 18 17 21 21 S 1.75939 * 109.75271 * 359.73846 * 19 18 17 22 22 C 1.36303 * 122.68738 * 174.73205 * 17 15 9 23 23 Cl 1.73598 * 125.52249 * 0.02562 * 22 17 15 24 24 H 0.96997 * 120.00054 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47235 * 24.48423 * 10 9 7 26 26 H 1.09010 * 109.47534 * 144.48370 * 10 9 7 27 27 H 1.09003 * 109.47278 * 300.00406 * 11 10 9 28 28 H 1.09001 * 109.47205 * 59.99839 * 11 10 9 29 29 H 0.96704 * 117.00589 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0091 -1.2035 -0.0005 8 1 3.0876 -1.2043 0.0550 9 7 1.3260 -2.3885 -0.0715 10 6 0.1679 -2.6195 0.7953 11 6 0.6104 -3.3830 2.0452 12 6 -0.5810 -3.6212 2.9366 13 8 -1.6722 -3.2209 2.6064 14 8 -0.4300 -4.2771 4.0980 15 6 1.7195 -3.3421 -0.9388 16 8 1.0638 -4.3598 -1.0629 17 6 2.9407 -3.1531 -1.7348 18 7 3.6445 -2.0178 -1.7178 19 6 4.6941 -1.9939 -2.4655 20 17 5.7772 -0.6465 -2.6237 21 16 4.8683 -3.5355 -3.2953 22 6 3.4460 -4.1224 -2.5491 23 17 2.7610 -5.7000 -2.7846 24 1 -0.4850 0.8400 0.0004 25 1 -0.2635 -1.6623 1.0881 26 1 -0.5779 -3.2048 0.2572 27 1 1.0419 -4.3402 1.7525 28 1 1.3561 -2.7978 2.5834 29 1 -1.2231 -4.4054 4.6361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071694.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:05 Heat of formation + Delta-G solvation = -89.629705 kcal Electronic energy + Delta-G solvation = -22438.926300 eV Core-core repulsion = 18541.252598 eV Total energy + Delta-G solvation = -3897.673702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54271 -41.12341 -39.49711 -38.09024 -37.79257 -37.20023 -36.78155 -33.78852 -32.41601 -31.12955 -27.38735 -26.95238 -25.26964 -23.15848 -21.82537 -20.97745 -20.30390 -19.25124 -18.57111 -17.64257 -17.52478 -17.19792 -16.90055 -16.49828 -16.12544 -15.89162 -15.71550 -15.21862 -14.71644 -14.28953 -14.07583 -13.75608 -13.62384 -13.49854 -12.93468 -12.83435 -12.74551 -12.54150 -12.52600 -12.42970 -12.21082 -12.03750 -11.88698 -11.62997 -11.09412 -10.80737 -10.54120 -10.34869 -9.83700 -9.35557 -8.19554 -6.06791 -0.91172 -0.69996 0.10031 0.53648 0.89124 1.15169 1.21748 1.47081 1.49773 1.59085 2.02449 2.32623 2.49903 2.87697 3.14758 3.52442 3.87447 4.02024 4.16701 4.46089 4.57263 4.77273 5.02341 5.44254 5.60238 5.73100 6.01322 6.21425 6.54910 7.02763 7.16175 7.46408 7.89212 8.79798 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.005680 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.438589 B = 4928.036917 C = 7096.654787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.314 4.314 8 H 0.116 0.884 9 N -0.427 5.427 10 C 0.128 3.872 11 C -0.116 4.116 12 C 0.496 3.504 13 O -0.548 6.548 14 O -0.507 6.507 15 C 0.521 3.479 16 O -0.597 6.597 17 C 0.041 3.959 18 N -0.397 5.397 19 C 0.057 3.943 20 Cl 0.049 6.951 21 S 0.328 5.672 22 C -0.181 4.181 23 Cl 0.039 6.961 24 H 0.268 0.732 25 H 0.109 0.891 26 H 0.036 0.964 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.371 -5.207 -2.467 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.175 1.175 7 C -0.442 4.442 8 H 0.134 0.866 9 N -0.144 5.144 10 C 0.004 3.996 11 C -0.155 4.155 12 C 0.340 3.660 13 O -0.439 6.439 14 O -0.321 6.321 15 C 0.308 3.692 16 O -0.483 6.483 17 C -0.096 4.096 18 N -0.114 5.114 19 C -0.247 4.247 20 Cl 0.076 6.924 21 S 0.578 5.422 22 C -0.332 4.332 23 Cl 0.067 6.933 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 12.558 -5.328 -3.219 14.016 hybrid contribution -1.511 0.790 0.823 1.893 sum 11.047 -4.539 -2.396 12.181 Atomic orbital electron populations 1.69837 1.07542 1.28158 1.48855 1.26280 0.95778 1.02689 0.95093 0.85225 0.78983 0.77586 0.78612 1.20092 1.21250 1.17512 1.20090 0.92810 0.81487 1.49833 0.86647 1.43492 1.26578 1.14134 1.30184 1.21213 0.88031 1.01613 0.88695 1.21614 0.95146 1.03517 0.95224 1.23304 0.89923 0.72773 0.80027 1.90711 1.29602 1.49560 1.73986 1.84500 1.45441 1.70192 1.31981 1.17734 0.84952 0.85415 0.81084 1.90701 1.56707 1.30873 1.69985 1.20384 0.99036 0.88270 1.01883 1.67601 1.03660 1.22436 1.17698 1.28608 0.97752 0.96436 1.01935 1.98423 1.57171 1.40875 1.95913 1.83320 1.15362 1.03755 1.39747 1.26787 1.04079 0.95922 1.06452 1.98384 1.83226 1.16639 1.95004 0.92186 0.87363 0.94574 0.88072 0.86621 0.71173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.57 10.93 21.67 0.24 -49.34 15 2 C 0.00 0.15 5.35 84.93 0.45 0.61 15 3 Si 0.97 40.75 29.55 68.60 2.03 42.77 15 4 H -0.28 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.29 -11.95 7.11 99.48 0.71 -11.25 15 6 H -0.25 -9.84 7.11 99.48 0.71 -9.13 15 7 C -0.31 -15.71 7.60 84.07 0.64 -15.07 15 8 H 0.12 5.61 6.00 -2.91 -0.02 5.59 15 9 N -0.43 -21.54 2.52 -639.69 -1.61 -23.16 15 10 C 0.13 6.31 4.18 86.38 0.36 6.67 15 11 C -0.12 -4.57 6.10 29.85 0.18 -4.39 15 12 C 0.50 18.02 8.33 71.23 0.59 18.61 15 13 O -0.55 -23.80 16.74 21.96 0.37 -23.43 15 14 O -0.51 -13.44 13.42 -51.39 -0.69 -14.13 15 15 C 0.52 25.43 7.56 86.54 0.65 26.09 15 16 O -0.60 -30.34 14.55 -4.33 -0.06 -30.40 15 17 C 0.04 1.71 6.54 40.72 0.27 1.98 15 18 N -0.40 -15.66 7.02 -179.29 -1.26 -16.92 15 19 C 0.06 1.73 8.26 130.67 1.08 2.81 15 20 Cl 0.05 1.22 29.33 -2.72 -0.08 1.14 15 21 S 0.33 7.78 23.18 -56.49 -1.31 6.47 15 22 C -0.18 -6.09 6.97 67.37 0.47 -5.62 15 23 Cl 0.04 1.25 27.23 -2.72 -0.07 1.18 15 24 H 0.27 14.09 8.31 -92.71 -0.77 13.32 15 25 H 0.11 5.89 5.40 -2.39 -0.01 5.87 15 26 H 0.04 1.93 7.49 -2.38 -0.02 1.91 15 27 H 0.10 3.86 8.14 -2.39 -0.02 3.84 15 28 H 0.12 4.25 8.14 -2.39 -0.02 4.23 15 29 H 0.43 6.96 9.10 -74.05 -0.67 6.28 15 Total: -1.00 -67.08 309.29 2.84 -64.25 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.59 Total: 9.89 kcal Atomic # 6 Polarization: 26.98 SS G_CDS: 4.70 Total: 31.68 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -2.63 Total: -89.41 kcal Atomic # 8 Polarization: -67.58 SS G_CDS: -0.39 Total: -67.96 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 7.78 SS G_CDS: -1.31 Total: 6.47 kcal Atomic # 17 Polarization: 2.47 SS G_CDS: -0.15 Total: 2.32 kcal Total: -67.08 2.84 -64.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071694.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -67.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds