Wall clock time and date at job start Tue Mar 31 2020 20:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86795 * 119.99966 * 2 1 4 4 H 1.48497 * 109.47216 * 239.99783 * 3 2 1 5 5 H 1.48497 * 109.47517 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47141 * 120.00362 * 3 2 1 7 7 C 1.39048 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99590 * 158.85171 * 7 2 1 9 9 N 1.36841 * 120.00236 * 338.85236 * 7 2 1 10 10 C 1.46501 * 119.99996 * 317.82701 * 9 7 2 11 11 C 1.52993 * 109.47455 * 269.99977 * 10 9 7 12 12 C 1.50700 * 109.47416 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99838 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00040 * 180.02562 * 12 11 10 15 15 C 1.34771 * 120.00138 * 137.83070 * 9 7 2 16 16 O 1.21696 * 120.00183 * 174.66791 * 15 9 7 17 17 C 1.46842 * 120.00193 * 354.66723 * 15 9 7 18 18 S 1.77057 * 127.98646 * 353.38118 * 17 15 9 19 19 N 1.56298 * 96.44344 * 179.97438 * 18 17 15 20 20 C 1.29595 * 110.44404 * 0.34093 * 19 18 17 21 21 Cl 1.73608 * 121.04797 * 179.75884 * 20 19 18 22 22 C 1.37800 * 117.90069 * 359.73401 * 20 19 18 23 23 Cl 1.73599 * 124.40274 * 180.02562 * 22 20 19 24 24 H 0.96998 * 120.00423 * 5.02763 * 1 2 3 25 25 H 1.09002 * 109.46673 * 30.00603 * 10 9 7 26 26 H 1.09000 * 109.46998 * 149.99909 * 10 9 7 27 27 H 1.09002 * 109.47692 * 300.00003 * 11 10 9 28 28 H 1.09000 * 109.47072 * 59.99978 * 11 10 9 29 29 H 0.96701 * 117.00014 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1014 1.6964 -1.2124 5 1 1.2827 2.7465 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0343 -1.2355 -0.3380 9 7 1.3938 -2.3496 0.4265 10 6 0.5438 -2.3235 1.6194 11 6 1.3923 -2.6225 2.8569 12 6 0.5178 -2.5963 4.0839 13 8 -0.6630 -2.3620 3.9794 14 8 1.0507 -2.8322 5.2931 15 6 1.5700 -3.5016 -0.2503 16 8 1.1034 -4.5390 0.1823 17 6 2.3250 -3.5052 -1.5098 18 16 2.9516 -2.1145 -2.4087 19 7 3.5982 -2.9342 -3.5717 20 6 3.4036 -4.2031 -3.3939 21 17 4.0037 -5.3691 -4.5316 22 6 2.7057 -4.5976 -2.2731 23 17 2.3501 -6.2481 -1.8695 24 1 -0.4851 0.8368 -0.0736 25 1 0.0890 -1.3380 1.7200 26 1 -0.2385 -3.0766 1.5246 27 1 1.8470 -3.6080 2.7564 28 1 2.1745 -1.8694 2.9517 29 1 0.4501 -2.8050 6.0505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071786.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:01 Heat of formation + Delta-G solvation = -92.599267 kcal Electronic energy + Delta-G solvation = -22278.682909 eV Core-core repulsion = 18380.880437 eV Total energy + Delta-G solvation = -3897.802472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.97685 -39.19479 -38.46212 -36.21769 -35.96227 -35.91440 -35.21834 -32.47243 -31.48076 -30.27296 -25.92995 -25.70472 -23.89395 -21.51196 -20.33861 -19.55245 -18.40953 -17.92886 -17.28512 -16.31837 -16.26353 -15.69101 -15.35207 -14.99865 -14.79252 -14.49842 -13.83671 -13.58933 -13.16653 -12.88043 -12.68522 -12.12535 -11.76698 -11.67667 -11.58333 -11.52219 -11.33084 -11.26437 -11.22482 -10.86230 -10.72186 -10.44110 -10.34512 -10.23221 -10.09255 -9.50786 -8.96730 -8.91508 -8.16621 -7.93054 -6.91951 -4.66524 0.71158 1.42834 1.62699 2.24666 2.53990 2.75587 2.86971 2.96321 2.97793 3.10449 3.29320 3.68390 3.92040 4.34384 4.51833 5.06029 5.40979 5.53315 5.61683 5.80459 5.97077 6.12937 6.51290 6.58520 6.70758 6.81816 7.01187 7.39351 7.78691 8.17708 8.50306 8.95445 9.41212 10.06621 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.004965 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.144219 B = 5637.566213 C = 7500.655938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.420 5.420 10 C 0.135 3.865 11 C -0.127 4.127 12 C 0.484 3.516 13 O -0.515 6.515 14 O -0.523 6.523 15 C 0.539 3.461 16 O -0.568 6.568 17 C -0.214 4.214 18 S 0.572 5.428 19 N -0.586 5.586 20 C 0.142 3.858 21 Cl -0.027 7.027 22 C -0.072 4.072 23 Cl -0.001 7.001 24 H 0.285 0.715 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -1.188 1.131 5.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.149 4.149 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.116 0.884 9 N -0.138 5.138 10 C 0.011 3.989 11 C -0.166 4.166 12 C 0.326 3.674 13 O -0.403 6.403 14 O -0.335 6.335 15 C 0.327 3.673 16 O -0.452 6.452 17 C -0.348 4.348 18 S 0.731 5.269 19 N -0.417 5.417 20 C -0.056 4.056 21 Cl 0.000 7.000 22 C -0.117 4.117 23 Cl 0.028 6.972 24 H 0.096 0.904 25 H 0.127 0.873 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.011 0.180 0.192 5.018 hybrid contribution -0.264 -1.185 0.603 1.356 sum 4.747 -1.005 0.795 4.917 Atomic orbital electron populations 1.69845 1.06689 1.29927 1.38103 1.25599 0.95146 1.00435 0.93710 0.86241 0.79976 0.80145 0.80446 1.18349 1.20015 1.18668 1.19397 0.96981 0.85421 1.47904 0.88423 1.43199 1.42346 1.07038 1.21223 1.21163 0.91539 1.05140 0.81059 1.21833 0.99486 1.05618 0.89659 1.23686 0.87738 0.71584 0.84360 1.90714 1.17946 1.44857 1.86747 1.84582 1.47108 1.83906 1.17884 1.16835 0.82907 0.85303 0.82233 1.90748 1.53572 1.32017 1.68849 1.26657 1.06527 0.98101 1.03553 1.83251 1.35943 1.07172 1.00503 1.71549 1.27346 1.08821 1.34009 1.20717 1.03221 0.88344 0.93332 1.98360 1.86856 1.55114 1.59687 1.20664 1.05753 0.89271 0.96001 1.98352 1.93302 1.12508 1.93072 0.90377 0.87315 0.90746 0.87916 0.87412 0.73950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -18.11 11.79 55.50 0.65 -17.46 15 2 C 0.07 1.37 4.92 -17.45 -0.09 1.29 15 3 Si 0.91 15.83 29.61 -169.99 -5.03 10.80 15 4 H -0.26 -4.36 7.11 56.52 0.40 -3.96 15 5 H -0.28 -4.88 7.11 56.52 0.40 -4.47 15 6 H -0.26 -4.52 7.11 56.52 0.40 -4.12 15 7 C -0.36 -7.45 6.93 -15.02 -0.10 -7.55 15 8 H 0.10 1.89 5.78 -41.44 -0.24 1.65 15 9 N -0.42 -9.06 2.47 -116.24 -0.29 -9.35 15 10 C 0.13 2.79 4.26 -4.04 -0.02 2.78 15 11 C -0.13 -2.18 6.13 -27.89 -0.17 -2.35 15 12 C 0.48 7.91 8.33 36.01 0.30 8.21 15 13 O -0.51 -9.94 16.74 -18.75 -0.31 -10.25 15 14 O -0.52 -6.66 13.42 -39.25 -0.53 -7.19 15 15 C 0.54 12.04 7.60 -12.78 -0.10 11.94 15 16 O -0.57 -13.64 15.33 5.19 0.08 -13.56 15 17 C -0.21 -4.39 6.49 -35.97 -0.23 -4.62 15 18 S 0.57 10.42 19.31 -107.50 -2.08 8.34 15 19 N -0.59 -10.91 11.28 24.53 0.28 -10.63 15 20 C 0.14 2.62 7.16 -18.66 -0.13 2.49 15 21 Cl -0.03 -0.44 28.63 -51.86 -1.48 -1.92 15 22 C -0.07 -1.41 6.52 -39.61 -0.26 -1.66 15 23 Cl 0.00 -0.02 27.29 -51.86 -1.41 -1.43 15 24 H 0.29 5.97 8.31 -40.82 -0.34 5.63 15 25 H 0.11 2.41 5.82 -51.93 -0.30 2.11 15 26 H 0.07 1.67 7.46 -51.93 -0.39 1.28 15 27 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15 28 H 0.11 1.71 8.14 -51.93 -0.42 1.29 15 29 H 0.40 3.24 9.10 45.56 0.41 3.65 15 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -26.31 308.30 -6.78 -33.09 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -0.49 Total: 4.39 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -0.80 Total: 10.52 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.64 Total: -37.43 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.76 Total: -31.00 kcal Atomic # 14 Polarization: 15.83 SS G_CDS: -5.03 Total: 10.80 kcal Atomic # 16 Polarization: 10.42 SS G_CDS: -2.08 Total: 8.34 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -2.90 Total: -3.35 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.31 -6.78 -33.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071786.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.510 kcal (2) G-P(sol) polarization free energy of solvation -26.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds