Wall clock time and date at job start Tue Mar 31 2020 20:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31368 * 1 3 3 Si 1.86795 * 119.99966 * 2 1 4 4 H 1.48497 * 109.47216 * 239.99783 * 3 2 1 5 5 H 1.48497 * 109.47517 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47141 * 120.00362 * 3 2 1 7 7 C 1.39048 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99590 * 158.85171 * 7 2 1 9 9 N 1.36841 * 120.00236 * 338.85236 * 7 2 1 10 10 C 1.46501 * 119.99996 * 317.82701 * 9 7 2 11 11 C 1.52993 * 109.47455 * 269.99977 * 10 9 7 12 12 C 1.50700 * 109.47416 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99838 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00040 * 180.02562 * 12 11 10 15 15 C 1.34771 * 120.00138 * 137.83070 * 9 7 2 16 16 O 1.21696 * 120.00183 * 174.66791 * 15 9 7 17 17 C 1.46842 * 120.00193 * 354.66723 * 15 9 7 18 18 S 1.77057 * 127.98646 * 353.38118 * 17 15 9 19 19 N 1.56298 * 96.44344 * 179.97438 * 18 17 15 20 20 C 1.29595 * 110.44404 * 0.34093 * 19 18 17 21 21 Cl 1.73608 * 121.04797 * 179.75884 * 20 19 18 22 22 C 1.37800 * 117.90069 * 359.73401 * 20 19 18 23 23 Cl 1.73599 * 124.40274 * 180.02562 * 22 20 19 24 24 H 0.96998 * 120.00423 * 5.02763 * 1 2 3 25 25 H 1.09002 * 109.46673 * 30.00603 * 10 9 7 26 26 H 1.09000 * 109.46998 * 149.99909 * 10 9 7 27 27 H 1.09002 * 109.47692 * 300.00003 * 11 10 9 28 28 H 1.09000 * 109.47072 * 59.99978 * 11 10 9 29 29 H 0.96701 * 117.00014 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1014 1.6964 -1.2124 5 1 1.2827 2.7465 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0343 -1.2355 -0.3380 9 7 1.3938 -2.3496 0.4265 10 6 0.5438 -2.3235 1.6194 11 6 1.3923 -2.6225 2.8569 12 6 0.5178 -2.5963 4.0839 13 8 -0.6630 -2.3620 3.9794 14 8 1.0507 -2.8322 5.2931 15 6 1.5700 -3.5016 -0.2503 16 8 1.1034 -4.5390 0.1823 17 6 2.3250 -3.5052 -1.5098 18 16 2.9516 -2.1145 -2.4087 19 7 3.5982 -2.9342 -3.5717 20 6 3.4036 -4.2031 -3.3939 21 17 4.0037 -5.3691 -4.5316 22 6 2.7057 -4.5976 -2.2731 23 17 2.3501 -6.2481 -1.8695 24 1 -0.4851 0.8368 -0.0736 25 1 0.0890 -1.3380 1.7200 26 1 -0.2385 -3.0766 1.5246 27 1 1.8470 -3.6080 2.7564 28 1 2.1745 -1.8694 2.9517 29 1 0.4501 -2.8050 6.0505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071786.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:00 Heat of formation + Delta-G solvation = -108.659747 kcal Electronic energy + Delta-G solvation = -22279.379344 eV Core-core repulsion = 18380.880437 eV Total energy + Delta-G solvation = -3898.498907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33566 -40.72973 -40.02208 -37.63753 -37.40773 -37.19667 -36.83024 -34.05669 -33.05359 -31.78209 -27.47855 -27.29649 -25.40932 -22.96584 -21.77005 -21.15945 -19.95832 -19.28465 -18.73488 -17.86710 -17.65589 -17.08408 -16.84895 -16.51018 -16.30284 -16.01503 -15.42068 -15.07878 -14.68839 -14.32622 -14.07349 -13.65609 -13.28257 -13.16675 -13.06560 -12.99906 -12.75759 -12.65352 -12.52716 -12.23213 -12.10638 -11.98943 -11.83529 -11.62958 -11.58627 -11.09165 -10.64828 -10.47951 -9.68507 -9.51812 -8.50166 -6.31543 -0.83501 -0.03644 0.16366 0.74402 1.22788 1.25593 1.48877 1.54612 1.61888 1.66047 2.00481 2.16653 2.35651 2.81086 2.94230 3.55103 3.98815 4.00408 4.12063 4.35094 4.52851 4.74130 4.94293 5.03498 5.21093 5.32341 5.62228 5.76836 6.17044 6.88713 7.03107 7.29486 7.75750 8.50010 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.004965 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.144219 B = 5637.566213 C = 7500.655938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.039 3.961 3 Si 0.960 3.040 4 H -0.244 1.244 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.372 4.372 8 H 0.113 0.887 9 N -0.422 5.422 10 C 0.139 3.861 11 C -0.119 4.119 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.508 6.508 15 C 0.527 3.473 16 O -0.596 6.596 17 C -0.242 4.242 18 S 0.610 5.390 19 N -0.586 5.586 20 C 0.136 3.864 21 Cl -0.003 7.003 22 C -0.074 4.074 23 Cl 0.004 6.996 24 H 0.287 0.713 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -0.498 1.048 6.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.173 4.173 3 Si 0.781 3.219 4 H -0.168 1.168 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.507 4.507 8 H 0.129 0.871 9 N -0.140 5.140 10 C 0.016 3.984 11 C -0.158 4.158 12 C 0.339 3.661 13 O -0.441 6.441 14 O -0.322 6.322 15 C 0.316 3.684 16 O -0.483 6.483 17 C -0.376 4.376 18 S 0.769 5.231 19 N -0.418 5.418 20 C -0.061 4.061 21 Cl 0.024 6.976 22 C -0.119 4.119 23 Cl 0.033 6.967 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 6.725 0.872 0.147 6.782 hybrid contribution -0.772 -1.467 0.606 1.765 sum 5.953 -0.595 0.753 6.029 Atomic orbital electron populations 1.69935 1.08254 1.30683 1.39462 1.26291 0.95435 1.02873 0.92726 0.85451 0.78922 0.76338 0.81213 1.16766 1.20644 1.17937 1.19731 0.97478 0.85160 1.48304 0.87061 1.43379 1.41921 1.07295 1.21362 1.20979 0.91621 1.03223 0.82606 1.21629 0.99185 1.06180 0.88798 1.23357 0.86800 0.70800 0.85157 1.90713 1.19294 1.46664 1.87402 1.84504 1.47283 1.82883 1.17517 1.17119 0.83202 0.85230 0.82808 1.90708 1.54970 1.32869 1.69738 1.26616 1.07688 0.99762 1.03571 1.82982 1.34656 1.05972 0.99500 1.71545 1.27424 1.08990 1.33806 1.20742 1.03084 0.88721 0.93591 1.98367 1.86460 1.54124 1.58620 1.20824 1.05485 0.89481 0.96146 1.98350 1.93250 1.12017 1.93084 0.90303 0.88873 0.93485 0.87703 0.85762 0.71155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -38.18 11.79 21.68 0.26 -37.92 15 2 C 0.04 1.58 4.92 84.96 0.42 2.00 15 3 Si 0.96 30.95 29.61 68.60 2.03 32.98 15 4 H -0.24 -7.27 7.11 99.48 0.71 -6.56 15 5 H -0.28 -9.31 7.11 99.48 0.71 -8.60 15 6 H -0.26 -7.94 7.11 99.48 0.71 -7.23 15 7 C -0.37 -15.09 6.93 84.11 0.58 -14.51 15 8 H 0.11 4.13 5.78 -9.94 -0.06 4.08 15 9 N -0.42 -18.37 2.47 -639.91 -1.58 -19.95 15 10 C 0.14 5.93 4.26 86.38 0.37 6.29 15 11 C -0.12 -4.05 6.13 29.85 0.18 -3.87 15 12 C 0.50 15.83 8.33 71.24 0.59 16.43 15 13 O -0.55 -21.36 16.74 21.96 0.37 -20.99 15 14 O -0.51 -11.84 13.42 -51.40 -0.69 -12.53 15 15 C 0.53 23.81 7.60 86.49 0.66 24.46 15 16 O -0.60 -29.26 15.33 -4.33 -0.07 -29.33 15 17 C -0.24 -9.83 6.49 24.61 0.16 -9.67 15 18 S 0.61 21.29 19.31 -56.49 -1.09 20.20 15 19 N -0.59 -20.65 11.28 -76.30 -0.86 -21.51 15 20 C 0.14 4.81 7.16 84.92 0.61 5.42 15 21 Cl 0.00 -0.09 28.63 -2.72 -0.08 -0.17 15 22 C -0.07 -2.82 6.52 22.25 0.15 -2.68 15 23 Cl 0.00 0.16 27.29 -2.72 -0.07 0.09 15 24 H 0.29 12.11 8.31 -92.71 -0.77 11.34 15 25 H 0.09 4.26 5.82 -2.39 -0.01 4.24 15 26 H 0.05 2.21 7.46 -2.39 -0.02 2.20 15 27 H 0.10 3.54 8.14 -2.39 -0.02 3.52 15 28 H 0.12 3.79 8.14 -2.39 -0.02 3.77 15 29 H 0.43 5.78 9.10 -74.06 -0.67 5.11 15 Total: -1.00 -55.87 308.30 2.47 -53.40 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.55 Total: 11.86 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 3.71 Total: 23.87 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -2.19 Total: -79.38 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -0.39 Total: -62.85 kcal Atomic # 14 Polarization: 30.95 SS G_CDS: 2.03 Total: 32.98 kcal Atomic # 16 Polarization: 21.29 SS G_CDS: -1.09 Total: 20.20 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.15 Total: -0.09 kcal Total: -55.87 2.47 -53.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071786.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.260 kcal (2) G-P(sol) polarization free energy of solvation -55.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds