Wall clock time and date at job start Tue Mar 31 2020 20:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31341 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48497 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46828 * 299.99687 * 3 2 1 6 6 H 1.48500 * 109.47054 * 59.99102 * 3 2 1 7 7 C 1.39089 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00527 * 198.95989 * 7 2 1 9 9 N 1.36773 * 120.00157 * 18.95542 * 7 2 1 10 10 C 1.46496 * 120.00175 * 208.63106 * 9 7 2 11 11 C 1.52999 * 109.46719 * 263.93199 * 10 9 7 12 12 C 1.50709 * 109.46785 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99934 * 0.02562 * 12 11 10 14 14 O 1.34233 * 119.99553 * 180.02562 * 12 11 10 15 15 C 1.34776 * 119.99495 * 28.62646 * 9 7 2 16 16 O 1.21676 * 120.00207 * 3.92441 * 15 9 7 17 17 C 1.47079 * 119.99844 * 183.91650 * 15 9 7 18 18 N 1.30646 * 125.54437 * 354.05627 * 17 15 9 19 19 C 1.30718 * 115.88169 * 179.97438 * 18 17 15 20 20 C 1.34237 * 115.79094 * 0.02562 * 19 18 17 21 21 C 1.50693 * 125.44835 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46983 * 90.00044 * 21 20 19 23 23 F 1.39894 * 109.47129 * 330.00216 * 21 20 19 24 24 F 1.39901 * 109.47307 * 209.99846 * 21 20 19 25 25 S 1.71069 * 109.10559 * 0.24191 * 20 19 18 26 26 H 0.97003 * 119.99603 * 4.98723 * 1 2 3 27 27 H 1.08991 * 109.47164 * 23.93458 * 10 9 7 28 28 H 1.09004 * 109.47191 * 143.93979 * 10 9 7 29 29 H 1.09000 * 109.47598 * 300.00233 * 11 10 9 30 30 H 1.08996 * 109.46978 * 60.00615 * 11 10 9 31 31 H 0.96703 * 116.99523 * 180.02562 * 14 12 11 32 32 H 1.08000 * 122.10062 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3463 0.0006 5 1 1.8888 2.3964 -1.2126 6 1 1.8886 2.3965 1.2124 7 6 2.0089 -1.2045 0.0005 8 1 3.0449 -1.2299 0.3044 9 7 1.3807 -2.3571 -0.3837 10 6 1.8114 -3.6446 0.1666 11 6 2.7879 -4.3127 -0.8034 12 6 3.2306 -5.6375 -0.2376 13 8 2.8080 -6.0093 0.8315 14 8 4.0944 -6.4044 -0.9215 15 6 0.3653 -2.3082 -1.2686 16 8 0.0541 -1.2488 -1.7797 17 6 -0.3666 -3.5356 -1.6165 18 7 -0.0578 -4.7419 -1.2213 19 6 -0.8411 -5.6991 -1.6444 20 6 -1.8598 -5.3157 -2.4301 21 6 -2.8895 -6.2340 -3.0362 22 9 -3.9716 -6.3646 -2.1591 23 9 -2.3182 -7.4907 -3.2623 24 9 -3.3349 -5.6989 -4.2497 25 16 -1.7976 -3.6191 -2.6395 26 1 -0.4850 0.8369 -0.0730 27 1 2.3046 -3.4833 1.1251 28 1 0.9430 -4.2880 0.3085 29 1 2.2947 -4.4740 -1.7620 30 1 3.6563 -3.6695 -0.9453 31 1 4.3487 -7.2458 -0.5183 32 1 -0.6784 -6.7333 -1.3791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:04 Heat of formation + Delta-G solvation = -192.638337 kcal Electronic energy + Delta-G solvation = -27310.353609 eV Core-core repulsion = 22563.913156 eV Total energy + Delta-G solvation = -4746.440453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.08161 -47.62176 -47.55862 -40.12387 -39.53925 -38.10725 -35.97641 -34.66626 -32.82540 -31.18490 -30.30487 -27.23429 -25.29907 -24.41607 -23.66532 -21.50173 -20.63481 -19.98436 -18.79411 -18.44521 -18.15288 -17.91683 -16.84873 -16.55414 -16.06939 -15.81663 -15.35175 -14.76063 -14.65912 -14.57534 -14.35240 -14.23574 -14.02158 -13.92220 -13.74032 -13.73526 -13.37712 -13.01804 -12.73571 -12.56263 -12.25410 -11.73709 -11.58678 -11.35359 -11.22384 -11.16299 -10.95159 -10.70661 -10.42783 -10.32076 -9.62345 -9.41760 -9.13909 -8.57837 -8.54555 -7.46054 -6.46971 -4.17333 0.44267 1.44959 2.01832 2.49501 2.76028 2.78874 3.12924 3.17738 3.22319 3.27567 3.84031 3.99995 4.25804 4.39994 4.45239 4.52262 4.85508 4.90831 5.36630 5.48829 5.50498 5.53180 5.84501 6.01846 6.18829 6.35898 6.66348 6.86428 7.04905 7.64145 7.83720 8.12609 8.44528 8.67603 9.09478 9.89527 10.42231 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.004829 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.582549 B = 5796.530426 C = 7889.127715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.024 3.976 3 Si 0.927 3.073 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.271 4.271 8 H 0.104 0.896 9 N -0.401 5.401 10 C 0.104 3.896 11 C -0.117 4.117 12 C 0.488 3.512 13 O -0.516 6.516 14 O -0.523 6.523 15 C 0.461 3.539 16 O -0.511 6.511 17 C 0.076 3.924 18 N -0.480 5.480 19 C 0.121 3.879 20 C -0.436 4.436 21 C 0.559 3.441 22 F -0.175 7.175 23 F -0.175 7.175 24 F -0.177 7.177 25 S 0.245 5.755 26 H 0.275 0.725 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.403 0.597 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 -9.798 -3.507 10.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.191 4.191 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.403 4.403 8 H 0.122 0.878 9 N -0.118 5.118 10 C -0.021 4.021 11 C -0.155 4.155 12 C 0.331 3.669 13 O -0.404 6.404 14 O -0.335 6.335 15 C 0.250 3.750 16 O -0.388 6.388 17 C -0.194 4.194 18 N -0.199 5.199 19 C -0.041 4.041 20 C -0.561 4.561 21 C 0.502 3.498 22 F -0.157 7.157 23 F -0.156 7.156 24 F -0.158 7.158 25 S 0.505 5.495 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.261 0.739 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.093 -8.187 -3.884 9.062 hybrid contribution 0.400 -1.219 0.403 1.344 sum 0.307 -9.405 -3.481 10.034 Atomic orbital electron populations 1.70065 1.06979 1.28952 1.32127 1.25266 0.95089 1.00054 0.98681 0.85854 0.79620 0.81257 0.78010 1.19114 1.20213 1.20728 1.19904 0.95594 0.84519 1.40275 0.87815 1.43383 1.29175 1.05546 1.33730 1.21861 0.99403 0.86170 0.94653 1.21710 1.01584 0.89749 1.02502 1.23579 0.74517 0.86361 0.82473 1.90690 1.53993 1.73009 1.22659 1.84586 1.60119 1.35017 1.53771 1.16042 0.86713 0.84712 0.87491 1.90706 1.68520 1.27505 1.52075 1.28973 0.96361 0.96682 0.97382 1.67429 1.29532 0.98474 1.24462 1.21580 0.89064 1.00632 0.92830 1.25280 1.08791 1.02224 1.19774 1.16889 0.79325 0.78081 0.75496 1.93221 1.57256 1.95997 1.69207 1.93177 1.84711 1.43059 1.94674 1.93200 1.90305 1.86017 1.46325 1.83963 1.25440 0.94692 1.45376 0.91381 0.90544 0.86984 0.87783 0.88079 0.73940 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.68 10.35 55.50 0.57 -19.11 16 2 C 0.02 0.58 4.46 -17.45 -0.08 0.50 16 3 Si 0.93 19.02 29.60 -169.99 -5.03 13.99 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.27 -6.41 9.44 -15.03 -0.14 -6.55 16 8 H 0.10 2.23 7.90 -52.49 -0.41 1.82 16 9 N -0.40 -9.14 2.61 -116.17 -0.30 -9.45 16 10 C 0.10 1.98 4.24 -4.04 -0.02 1.97 16 11 C -0.12 -1.88 5.65 -27.88 -0.16 -2.03 16 12 C 0.49 7.30 8.33 36.01 0.30 7.60 16 13 O -0.52 -8.97 16.74 -18.75 -0.31 -9.29 16 14 O -0.52 -6.19 13.42 -39.27 -0.53 -6.71 16 15 C 0.46 11.08 6.90 -12.68 -0.09 10.99 16 16 O -0.51 -13.83 13.37 5.21 0.07 -13.76 16 17 C 0.08 1.57 7.05 -14.47 -0.10 1.46 16 18 N -0.48 -8.85 5.80 -11.54 -0.07 -8.92 16 19 C 0.12 1.96 10.79 -19.44 -0.21 1.75 16 20 C -0.44 -7.04 5.82 -35.72 -0.21 -7.25 16 21 C 0.56 8.13 3.52 36.00 0.13 8.26 16 22 F -0.18 -2.58 17.30 2.25 0.04 -2.54 16 23 F -0.17 -2.39 16.95 2.25 0.04 -2.35 16 24 F -0.18 -2.58 17.02 2.25 0.04 -2.54 16 25 S 0.25 4.41 22.69 -107.50 -2.44 1.97 16 26 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 28 H 0.11 2.25 5.25 -51.93 -0.27 1.98 16 29 H 0.10 1.73 7.10 -51.93 -0.37 1.36 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.40 2.90 9.10 45.56 0.41 3.32 16 32 H 0.17 2.29 8.00 -52.49 -0.42 1.87 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -29.02 315.13 -4.78 -33.80 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -1.03 Total: 3.45 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -0.57 Total: 16.70 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.20 Total: -37.47 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.77 Total: -29.76 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.12 Total: -7.43 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -2.44 Total: 1.97 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.02 -4.78 -33.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.837 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds