Wall clock time and date at job start Tue Mar 31 2020 20:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31341 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48497 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46828 * 299.99687 * 3 2 1 6 6 H 1.48500 * 109.47054 * 59.99102 * 3 2 1 7 7 C 1.39089 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00527 * 198.95989 * 7 2 1 9 9 N 1.36773 * 120.00157 * 18.95542 * 7 2 1 10 10 C 1.46496 * 120.00175 * 208.63106 * 9 7 2 11 11 C 1.52999 * 109.46719 * 263.93199 * 10 9 7 12 12 C 1.50709 * 109.46785 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99934 * 0.02562 * 12 11 10 14 14 O 1.34233 * 119.99553 * 180.02562 * 12 11 10 15 15 C 1.34776 * 119.99495 * 28.62646 * 9 7 2 16 16 O 1.21676 * 120.00207 * 3.92441 * 15 9 7 17 17 C 1.47079 * 119.99844 * 183.91650 * 15 9 7 18 18 N 1.30646 * 125.54437 * 354.05627 * 17 15 9 19 19 C 1.30718 * 115.88169 * 179.97438 * 18 17 15 20 20 C 1.34237 * 115.79094 * 0.02562 * 19 18 17 21 21 C 1.50693 * 125.44835 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46983 * 90.00044 * 21 20 19 23 23 F 1.39894 * 109.47129 * 330.00216 * 21 20 19 24 24 F 1.39901 * 109.47307 * 209.99846 * 21 20 19 25 25 S 1.71069 * 109.10559 * 0.24191 * 20 19 18 26 26 H 0.97003 * 119.99603 * 4.98723 * 1 2 3 27 27 H 1.08991 * 109.47164 * 23.93458 * 10 9 7 28 28 H 1.09004 * 109.47191 * 143.93979 * 10 9 7 29 29 H 1.09000 * 109.47598 * 300.00233 * 11 10 9 30 30 H 1.08996 * 109.46978 * 60.00615 * 11 10 9 31 31 H 0.96703 * 116.99523 * 180.02562 * 14 12 11 32 32 H 1.08000 * 122.10062 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3463 0.0006 5 1 1.8888 2.3964 -1.2126 6 1 1.8886 2.3965 1.2124 7 6 2.0089 -1.2045 0.0005 8 1 3.0449 -1.2299 0.3044 9 7 1.3807 -2.3571 -0.3837 10 6 1.8114 -3.6446 0.1666 11 6 2.7879 -4.3127 -0.8034 12 6 3.2306 -5.6375 -0.2376 13 8 2.8080 -6.0093 0.8315 14 8 4.0944 -6.4044 -0.9215 15 6 0.3653 -2.3082 -1.2686 16 8 0.0541 -1.2488 -1.7797 17 6 -0.3666 -3.5356 -1.6165 18 7 -0.0578 -4.7419 -1.2213 19 6 -0.8411 -5.6991 -1.6444 20 6 -1.8598 -5.3157 -2.4301 21 6 -2.8895 -6.2340 -3.0362 22 9 -3.9716 -6.3646 -2.1591 23 9 -2.3182 -7.4907 -3.2623 24 9 -3.3349 -5.6989 -4.2497 25 16 -1.7976 -3.6191 -2.6395 26 1 -0.4850 0.8369 -0.0730 27 1 2.3046 -3.4833 1.1251 28 1 0.9430 -4.2880 0.3085 29 1 2.2947 -4.4740 -1.7620 30 1 3.6563 -3.6695 -0.9453 31 1 4.3487 -7.2458 -0.5183 32 1 -0.6784 -6.7333 -1.3791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:03 Heat of formation + Delta-G solvation = -210.911561 kcal Electronic energy + Delta-G solvation = -27311.145995 eV Core-core repulsion = 22563.913156 eV Total energy + Delta-G solvation = -4747.232839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.27810 -48.80365 -48.75298 -41.49898 -40.91404 -39.75548 -37.12133 -36.35829 -34.48742 -32.65238 -31.79735 -28.78680 -26.88062 -25.82599 -25.12394 -23.00889 -21.92909 -21.46175 -20.15898 -19.64030 -19.54268 -19.11684 -18.32007 -17.95853 -17.60100 -17.06634 -16.83554 -16.33079 -16.16094 -16.02110 -15.60669 -15.55698 -15.45373 -15.19413 -14.91940 -14.91532 -14.83633 -14.38156 -14.25530 -14.06225 -13.61402 -13.34329 -13.15189 -12.81196 -12.67986 -12.63781 -12.44212 -12.15774 -12.01271 -11.58693 -11.29846 -10.92205 -10.69695 -10.36473 -10.06572 -9.23719 -8.23041 -6.01966 -1.03718 -0.07976 0.51350 1.29316 1.31795 1.48620 1.51827 1.53811 1.62434 2.09746 2.36449 2.53795 2.66678 2.93895 3.03182 3.17457 3.22852 3.35582 4.01008 4.04112 4.10723 4.17295 4.58353 4.71228 4.78399 4.92892 5.28746 5.35422 5.68978 5.92059 6.32890 6.72710 6.96587 7.10666 7.39388 8.13446 8.69553 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.004829 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.582549 B = 5796.530426 C = 7889.127715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C -0.015 4.015 3 Si 0.986 3.014 4 H -0.249 1.249 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.312 4.312 8 H 0.116 0.884 9 N -0.413 5.413 10 C 0.108 3.892 11 C -0.110 4.110 12 C 0.502 3.498 13 O -0.542 6.542 14 O -0.512 6.512 15 C 0.459 3.541 16 O -0.548 6.548 17 C 0.048 3.952 18 N -0.465 5.465 19 C 0.113 3.887 20 C -0.413 4.413 21 C 0.567 3.433 22 F -0.172 7.172 23 F -0.163 7.163 24 F -0.174 7.174 25 S 0.276 5.724 26 H 0.267 0.733 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.427 0.573 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -12.442 -4.434 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.225 4.225 3 Si 0.810 3.190 4 H -0.172 1.172 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.442 4.442 8 H 0.134 0.866 9 N -0.130 5.130 10 C -0.016 4.016 11 C -0.148 4.148 12 C 0.345 3.655 13 O -0.433 6.433 14 O -0.326 6.326 15 C 0.247 3.753 16 O -0.428 6.428 17 C -0.223 4.223 18 N -0.184 5.184 19 C -0.048 4.048 20 C -0.538 4.538 21 C 0.510 3.490 22 F -0.153 7.153 23 F -0.144 7.144 24 F -0.155 7.155 25 S 0.535 5.465 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.288 0.712 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.168 -10.868 -4.781 11.875 hybrid contribution 0.122 -0.815 0.496 0.962 sum 0.290 -11.684 -4.285 12.448 Atomic orbital electron populations 1.70167 1.08480 1.28843 1.36468 1.26087 0.95550 1.03023 0.97793 0.84974 0.79420 0.77577 0.77049 1.17219 1.21806 1.20524 1.20138 0.96326 0.85134 1.42636 0.86645 1.43455 1.29224 1.06485 1.33826 1.21807 0.99612 0.84869 0.95277 1.21492 1.01258 0.90783 1.01295 1.23114 0.74500 0.86011 0.81859 1.90694 1.55237 1.73567 1.23775 1.84512 1.58812 1.36115 1.53165 1.16482 0.86728 0.85145 0.86901 1.90670 1.69323 1.29310 1.53467 1.28565 0.97987 0.96414 0.99316 1.67445 1.29575 0.98095 1.23256 1.22062 0.88563 1.01589 0.92607 1.25651 1.08434 1.01697 1.17995 1.16611 0.78854 0.78067 0.75447 1.93240 1.56952 1.95959 1.69178 1.93213 1.84539 1.42115 1.94574 1.93220 1.90191 1.86047 1.46087 1.84004 1.23597 0.95813 1.43074 0.92305 0.90910 0.87925 0.88135 0.87043 0.71180 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.78 10.35 21.69 0.22 -44.55 16 2 C -0.01 -0.76 4.46 84.97 0.38 -0.38 16 3 Si 0.99 40.62 29.60 68.60 2.03 42.65 16 4 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.31 -15.30 9.44 84.13 0.79 -14.51 16 8 H 0.12 5.11 7.90 -2.91 -0.02 5.09 16 9 N -0.41 -19.33 2.61 -639.68 -1.67 -20.99 16 10 C 0.11 4.16 4.24 86.38 0.37 4.52 16 11 C -0.11 -3.41 5.65 29.85 0.17 -3.24 16 12 C 0.50 13.97 8.33 71.24 0.59 14.56 16 13 O -0.54 -17.96 16.74 21.98 0.37 -17.59 16 14 O -0.51 -10.50 13.42 -51.45 -0.69 -11.19 16 15 C 0.46 22.58 6.90 86.56 0.60 23.17 16 16 O -0.55 -30.82 13.37 -4.27 -0.06 -30.88 16 17 C 0.05 1.96 7.05 87.19 0.61 2.58 16 18 N -0.47 -16.30 5.80 -190.41 -1.10 -17.40 16 19 C 0.11 3.27 10.79 83.94 0.91 4.17 16 20 C -0.41 -11.96 5.82 24.77 0.14 -11.82 16 21 C 0.57 14.32 3.52 71.23 0.25 14.57 16 22 F -0.17 -4.42 17.30 44.97 0.78 -3.64 16 23 F -0.16 -3.75 16.95 44.97 0.76 -2.99 16 24 F -0.17 -4.46 17.02 44.97 0.77 -3.69 16 25 S 0.28 9.45 22.69 -56.49 -1.28 8.17 16 26 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.07 2.80 7.95 -2.39 -0.02 2.78 16 28 H 0.10 4.10 5.25 -2.39 -0.01 4.09 16 29 H 0.10 3.21 7.10 -2.39 -0.02 3.19 16 30 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.43 4.62 9.10 -74.05 -0.67 3.94 16 32 H 0.21 4.53 8.00 -2.91 -0.02 4.51 16 Total: -1.00 -64.57 315.13 5.50 -59.06 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.56 Total: 9.42 kcal Atomic # 6 Polarization: 28.82 SS G_CDS: 4.81 Total: 33.63 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.55 Total: -82.95 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: -0.38 Total: -59.66 kcal Atomic # 9 Polarization: -12.63 SS G_CDS: 2.31 Total: -10.32 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 9.45 SS G_CDS: -1.28 Total: 8.17 kcal Total: -64.57 5.50 -59.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.847 kcal (2) G-P(sol) polarization free energy of solvation -64.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds