Wall clock time and date at job start Tue Mar 31 2020 20:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 119.99785 * 2 1 4 4 H 1.48498 * 109.46753 * 274.91978 * 3 2 1 5 5 H 1.48494 * 109.47412 * 34.91802 * 3 2 1 6 6 H 1.48498 * 109.47104 * 154.92273 * 3 2 1 7 7 C 1.38981 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99482 * 348.21119 * 7 2 1 9 9 N 1.36950 * 120.00539 * 168.21474 * 7 2 1 10 10 C 1.46491 * 120.00428 * 123.25321 * 9 7 2 11 11 C 1.53000 * 109.47283 * 85.69169 * 10 9 7 12 12 C 1.50703 * 109.47291 * 175.35358 * 11 10 9 13 13 O 1.20824 * 119.99793 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00083 * 179.97438 * 12 11 10 15 15 C 1.34781 * 119.99361 * 303.52897 * 9 7 2 16 16 O 1.21665 * 119.99591 * 183.80074 * 15 9 7 17 17 C 1.47167 * 120.00265 * 3.80427 * 15 9 7 18 18 N 1.33573 * 123.15290 * 329.88875 * 17 15 9 19 19 C 1.28658 * 115.77263 * 179.97438 * 18 17 15 20 20 S 1.70766 * 110.57260 * 0.02562 * 19 18 17 21 21 C 1.35302 * 123.15481 * 149.59568 * 17 15 9 22 22 C 1.50699 * 125.58639 * 359.97438 * 21 17 15 23 23 F 1.39892 * 109.47356 * 77.56872 * 22 21 17 24 24 F 1.39896 * 109.47282 * 197.57350 * 22 21 17 25 25 F 1.39905 * 109.47081 * 317.56867 * 22 21 17 26 26 H 0.96994 * 120.00352 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47281 * 205.69300 * 10 9 7 28 28 H 1.09001 * 109.47208 * 325.69153 * 10 9 7 29 29 H 1.09002 * 109.47001 * 295.35739 * 11 10 9 30 30 H 1.09000 * 109.46869 * 55.35368 * 11 10 9 31 31 H 0.96693 * 116.99964 * 180.02562 * 14 12 11 32 32 H 1.08000 * 124.71283 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3915 2.1065 -1.3949 5 1 1.5014 2.6205 0.8014 6 1 3.5937 1.4125 0.5934 7 6 2.0091 -1.2035 0.0005 8 1 1.4861 -2.1289 0.1921 9 7 3.3569 -1.2162 -0.2417 10 6 4.2719 -1.8060 0.7386 11 6 4.3778 -3.3128 0.4952 12 6 5.4044 -3.9015 1.4284 13 8 5.9907 -3.1890 2.2084 14 8 5.6666 -5.2175 1.3937 15 6 3.8421 -0.6808 -1.3795 16 8 5.0310 -0.7533 -1.6272 17 6 2.9337 -0.0086 -2.3222 18 7 1.6509 -0.3504 -2.4703 19 6 0.9862 0.3326 -3.3345 20 16 1.9824 1.5148 -4.0599 21 6 3.3180 1.0174 -3.1161 22 6 4.6980 1.6212 -3.1623 23 9 5.5474 0.7875 -3.8975 24 9 4.6366 2.8788 -3.7720 25 9 5.1911 1.7578 -1.8602 26 1 -0.4850 0.8400 -0.0004 27 1 5.2571 -1.3512 0.6357 28 1 3.8920 -1.6263 1.7443 29 1 3.4100 -3.7794 0.6787 30 1 4.6787 -3.4939 -0.5367 31 1 6.3326 -5.5488 2.0115 32 1 -0.0568 0.1790 -3.5693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072556.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:07 Heat of formation + Delta-G solvation = -217.183752 kcal Electronic energy + Delta-G solvation = -28600.213282 eV Core-core repulsion = 23852.708460 eV Total energy + Delta-G solvation = -4747.504822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.32526 -48.87742 -48.75278 -41.93191 -41.22637 -39.70753 -37.29173 -36.90932 -34.34233 -32.92655 -32.38756 -28.53348 -27.00598 -25.87763 -25.19064 -23.28868 -21.90345 -21.34645 -20.69793 -19.73676 -19.64759 -19.15394 -18.37444 -18.20557 -17.86667 -17.34222 -16.97755 -16.58228 -16.41807 -15.88951 -15.79172 -15.63549 -15.48401 -15.35190 -15.19578 -14.98806 -14.92321 -14.73557 -14.62208 -14.20110 -13.75980 -13.56495 -13.33069 -13.08279 -12.94425 -12.56686 -12.53103 -12.22046 -12.12184 -11.68759 -11.48216 -11.09361 -10.72760 -10.29512 -10.04132 -9.62239 -8.43475 -6.21629 -0.90037 -0.02177 0.42864 0.99607 1.06635 1.17924 1.20472 1.37363 1.46626 1.94132 2.11478 2.13199 2.49624 2.57019 2.96574 3.05506 3.17757 3.35484 3.83664 3.92997 3.95064 4.14453 4.40487 4.60372 4.69361 4.79562 4.96642 5.57516 5.66879 5.75053 6.33925 6.49023 6.92514 6.99377 7.17543 7.57212 8.67179 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.005796 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.023066 B = 4829.378198 C = 5788.984252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.096 3.904 3 Si 0.841 3.159 4 H -0.237 1.237 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.324 4.324 8 H 0.093 0.907 9 N -0.450 5.450 10 C 0.121 3.879 11 C -0.114 4.114 12 C 0.499 3.501 13 O -0.550 6.550 14 O -0.507 6.507 15 C 0.532 3.468 16 O -0.586 6.586 17 C 0.096 3.904 18 N -0.399 5.399 19 C 0.020 3.980 20 S 0.309 5.691 21 C -0.381 4.381 22 C 0.555 3.445 23 F -0.164 7.164 24 F -0.167 7.167 25 F -0.178 7.178 26 H 0.277 0.723 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.428 0.572 32 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.213 -0.220 -7.354 7.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.113 4.113 3 Si 0.667 3.333 4 H -0.160 1.160 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.452 4.452 8 H 0.111 0.889 9 N -0.169 5.169 10 C -0.002 4.002 11 C -0.153 4.153 12 C 0.342 3.658 13 O -0.441 6.441 14 O -0.321 6.321 15 C 0.319 3.681 16 O -0.470 6.470 17 C -0.046 4.046 18 N -0.111 5.111 19 C -0.278 4.278 20 S 0.569 5.431 21 C -0.507 4.507 22 C 0.498 3.502 23 F -0.145 7.145 24 F -0.148 7.148 25 F -0.159 7.159 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.143 0.857 30 H 0.124 0.876 31 H 0.290 0.710 32 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 1.008 0.498 -8.001 8.079 hybrid contribution 1.553 0.371 1.548 2.224 sum 2.561 0.870 -6.453 6.997 Atomic orbital electron populations 1.69644 1.05949 1.27985 1.46257 1.25467 0.95129 0.97824 0.92872 0.87480 0.79797 0.84659 0.81403 1.16047 1.20861 1.21198 1.18740 0.80045 0.95044 1.51369 0.88913 1.43598 1.07589 1.51459 1.14289 1.21340 0.94063 0.91934 0.92866 1.21513 0.98744 0.95581 0.99417 1.23212 0.81006 0.80225 0.81312 1.90707 1.51176 1.62132 1.40076 1.84500 1.60575 1.24394 1.62593 1.17998 0.86490 0.81616 0.82012 1.90721 1.16273 1.63438 1.76569 1.20286 0.91977 0.94797 0.97511 1.67660 1.02218 1.27331 1.13856 1.29643 1.07282 0.95880 0.94985 1.82049 0.94268 1.33458 1.33363 1.25784 1.02385 1.09149 1.13335 1.16813 0.83878 0.75547 0.73950 1.93213 1.72632 1.71711 1.76995 1.93189 1.96621 1.41865 1.83171 1.93204 1.89026 1.95626 1.38072 0.91269 0.91879 0.89841 0.85671 0.87598 0.70961 0.73949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.96 13.96 21.67 0.30 -42.66 16 2 C 0.10 4.73 3.34 84.93 0.28 5.01 16 3 Si 0.84 39.94 23.97 68.60 1.64 41.58 16 4 H -0.24 -10.26 4.34 99.48 0.43 -9.83 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -15.00 7.11 99.48 0.71 -14.30 16 7 C -0.32 -15.94 8.53 84.07 0.72 -15.23 16 8 H 0.09 4.79 8.06 -2.91 -0.02 4.77 16 9 N -0.45 -21.20 1.91 -639.53 -1.22 -22.42 16 10 C 0.12 5.05 4.75 86.38 0.41 5.46 16 11 C -0.11 -3.80 6.12 29.85 0.18 -3.62 16 12 C 0.50 15.22 8.33 71.24 0.59 15.81 16 13 O -0.55 -20.16 16.68 21.97 0.37 -19.80 16 14 O -0.51 -11.33 13.42 -51.42 -0.69 -12.03 16 15 C 0.53 25.66 5.47 86.59 0.47 26.13 16 16 O -0.59 -29.69 13.77 -4.24 -0.06 -29.75 16 17 C 0.10 4.19 3.43 40.55 0.14 4.33 16 18 N -0.40 -16.18 6.78 -193.04 -1.31 -17.49 16 19 C 0.02 0.60 12.17 130.71 1.59 2.19 16 20 S 0.31 8.37 22.06 -56.49 -1.25 7.13 16 21 C -0.38 -14.64 3.85 25.01 0.10 -14.55 16 22 C 0.55 21.62 2.83 71.24 0.20 21.82 16 23 F -0.16 -6.44 16.68 44.97 0.75 -5.69 16 24 F -0.17 -5.52 16.89 44.97 0.76 -4.76 16 25 F -0.18 -7.94 14.68 44.97 0.66 -7.28 16 26 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 27 H 0.06 2.84 7.17 -2.39 -0.02 2.82 16 28 H 0.08 3.44 8.07 -2.39 -0.02 3.42 16 29 H 0.13 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 31 H 0.43 5.35 9.10 -74.06 -0.67 4.68 16 32 H 0.24 5.15 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -67.04 303.22 4.93 -62.11 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 0.28 Total: 3.68 kcal Atomic # 6 Polarization: 42.67 SS G_CDS: 4.69 Total: 47.36 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -2.23 Total: -82.56 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -0.38 Total: -61.57 kcal Atomic # 9 Polarization: -19.90 SS G_CDS: 2.17 Total: -17.73 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.64 Total: 41.58 kcal Atomic # 16 Polarization: 8.37 SS G_CDS: -1.25 Total: 7.13 kcal Total: -67.04 4.93 -62.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072556.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.076 kcal (2) G-P(sol) polarization free energy of solvation -67.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds