Wall clock time and date at job start Tue Mar 31 2020 20:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39674 * 120.14403 * 331.48432 * 3 2 1 5 5 C 1.37880 * 119.85734 * 180.02562 * 4 3 2 6 6 C 1.38498 * 120.14308 * 0.03016 * 5 4 3 7 7 Br 1.89097 * 119.85875 * 179.97438 * 6 5 4 8 8 C 1.38444 * 120.28110 * 359.97123 * 6 5 4 9 9 C 1.50706 * 119.92771 * 180.02562 * 8 6 5 10 10 N 1.46502 * 109.47289 * 280.22117 * 9 8 6 11 11 C 1.36935 * 119.99839 * 95.06746 * 10 9 8 12 12 H 1.08004 * 120.00372 * 20.51653 * 11 10 9 13 13 C 1.38812 * 120.00139 * 200.51430 * 11 10 9 14 14 N 1.31619 * 119.99702 * 12.81979 * 13 11 10 15 15 Si 1.86802 * 120.00176 * 192.82203 * 13 11 10 16 16 H 1.48499 * 109.46847 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47139 * 119.99992 * 15 13 11 18 18 H 1.48504 * 109.46985 * 240.00062 * 15 13 11 19 19 C 1.46496 * 120.00204 * 275.07414 * 10 9 8 20 20 C 1.50693 * 109.47624 * 84.91828 * 19 10 9 21 21 O 1.20831 * 119.99822 * 0.02562 * 20 19 10 22 22 O 1.34229 * 120.00204 * 179.97438 * 20 19 10 23 23 C 1.37927 * 120.14254 * 0.27923 * 8 6 5 24 24 H 1.08007 * 120.07135 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.93048 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47265 * 160.22300 * 9 8 6 27 27 H 1.08996 * 109.46849 * 40.21937 * 9 8 6 28 28 H 0.97002 * 119.99972 * 180.02562 * 14 13 11 29 29 H 1.08995 * 109.47032 * 204.92745 * 19 10 9 30 30 H 1.09003 * 109.46533 * 324.92209 * 19 10 9 31 31 H 0.96705 * 116.99720 * 179.97438 * 22 20 19 32 32 H 1.08008 * 120.07129 * 179.72300 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.0604 0.5766 5 6 4.6487 -1.0534 0.5738 6 6 5.3377 0.0029 0.0014 7 35 7.2287 0.0045 0.0026 8 6 4.6479 1.0575 -0.5717 9 6 5.4057 2.2026 -1.1929 10 7 5.8622 3.1140 -0.1407 11 6 7.1249 2.9879 0.3739 12 1 7.8876 2.4687 -0.1875 13 6 7.4248 3.5274 1.6172 14 7 6.4554 3.9334 2.4096 15 14 9.2041 3.6775 2.1658 16 1 10.0963 3.1532 1.1007 17 1 9.5244 5.1046 2.4224 18 1 9.4062 2.8932 3.4106 19 6 4.9679 4.1602 0.3611 20 6 4.0815 3.5896 1.4379 21 8 4.1865 2.4282 1.7543 22 8 3.1762 4.3718 2.0465 23 6 3.2686 1.0651 -0.5708 24 1 2.7338 -1.8841 1.0245 25 1 5.1926 -1.8731 1.0197 26 1 4.7527 2.7398 -1.8807 27 1 6.2670 1.8154 -1.7371 28 1 6.6649 4.3107 3.2783 29 1 5.5599 4.9775 0.7728 30 1 4.3515 4.5341 -0.4565 31 1 2.6302 3.9609 2.7307 32 1 2.7316 1.8906 -1.0143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:43 Heat of formation + Delta-G solvation = 4.904197 kcal Electronic energy + Delta-G solvation = -21716.288722 eV Core-core repulsion = 18303.799705 eV Total energy + Delta-G solvation = -3412.489017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.34640 -38.51284 -36.45740 -35.66319 -34.33883 -32.39487 -31.78521 -30.45295 -29.05866 -27.53352 -25.70224 -23.13085 -22.77123 -21.32531 -20.06925 -17.94208 -16.99765 -16.57653 -15.69893 -15.50450 -15.28031 -15.14970 -14.13355 -14.09425 -13.81126 -13.47769 -13.31303 -13.06071 -12.83888 -12.67839 -12.18659 -11.74345 -11.47408 -11.26730 -11.14028 -10.99887 -10.83723 -10.64510 -10.42725 -10.15037 -10.07516 -9.92758 -9.34726 -9.05043 -8.59469 -8.43933 -8.04372 -7.09678 -5.96355 -3.31610 0.99757 1.68207 2.28837 2.81247 3.13283 3.31357 3.38908 3.40506 3.94651 4.04397 4.15766 4.34189 4.55911 5.06875 5.10564 5.31250 5.36486 5.51916 5.71795 5.82552 6.00924 6.19290 6.31357 6.33890 6.46567 6.54147 6.79205 6.91573 7.02975 7.06019 7.62933 7.69425 7.90458 8.12151 8.96967 9.45979 9.63331 10.03147 11.14350 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.007516 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.217751 B = 3724.675700 C = 5201.737221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.267 3.733 3 C -0.027 4.027 4 C -0.083 4.083 5 C -0.097 4.097 6 C -0.029 4.029 7 Br -0.034 7.034 8 C -0.045 4.045 9 C 0.163 3.837 10 N -0.551 5.551 11 C -0.238 4.238 12 H 0.089 0.911 13 C 0.007 3.993 14 N -0.906 5.906 15 Si 0.905 3.095 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.290 1.290 19 C 0.190 3.810 20 C 0.474 3.526 21 O -0.503 6.503 22 O -0.547 6.547 23 C -0.057 4.057 24 H 0.127 0.873 25 H 0.130 0.870 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.257 0.743 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.379 0.621 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 -5.889 -6.268 8.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.047 4.047 3 C -0.031 4.031 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.110 4.110 7 Br 0.053 6.947 8 C -0.051 4.051 9 C 0.036 3.964 10 N -0.268 5.268 11 C -0.367 4.367 12 H 0.107 0.893 13 C -0.191 4.191 14 N -0.551 5.551 15 Si 0.735 3.265 16 H -0.201 1.201 17 H -0.216 1.216 18 H -0.217 1.217 19 C 0.061 3.939 20 C 0.314 3.686 21 O -0.388 6.388 22 O -0.357 6.357 23 C -0.079 4.079 24 H 0.145 0.855 25 H 0.148 0.852 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.066 0.934 31 H 0.234 0.766 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.609 -5.919 -6.350 8.829 hybrid contribution 0.417 -0.325 1.606 1.691 sum -1.192 -6.243 -4.744 7.931 Atomic orbital electron populations 1.81182 1.12175 1.08512 1.09515 1.25855 0.92785 0.93059 0.93019 1.15947 0.83776 0.98231 1.05141 1.20813 0.93590 0.97259 0.98867 1.20867 0.93570 0.98075 0.99245 1.21762 0.91196 0.96747 1.01337 1.96672 1.02064 1.98537 1.97420 1.20810 0.92997 0.94335 0.96908 1.20379 0.96726 0.87807 0.91454 1.44322 1.11192 1.30044 1.41273 1.19517 0.84984 1.32574 0.99659 0.89335 1.24865 0.97442 1.01391 0.95387 1.69658 1.29873 1.45924 1.09685 0.86156 0.84394 0.77435 0.78522 1.20136 1.21558 1.21720 1.20297 0.90406 0.92654 0.90528 1.25042 0.76033 0.84876 0.82671 1.90547 1.65982 1.19214 1.63041 1.84621 1.49689 1.48782 1.52621 1.20819 0.93342 0.96075 0.97709 0.85499 0.85185 0.92633 0.90421 0.93274 0.86497 0.93447 0.76582 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.44 18.54 41.84 0.78 -6.66 16 2 C 0.27 4.20 15.33 -22.47 -0.34 3.85 16 3 C -0.03 -0.41 5.73 -106.91 -0.61 -1.03 16 4 C -0.08 -1.20 9.76 -39.18 -0.38 -1.58 16 5 C -0.10 -1.50 9.77 -39.62 -0.39 -1.88 16 6 C -0.03 -0.50 6.23 -39.41 -0.25 -0.75 16 7 Br -0.03 -0.60 28.54 -68.01 -1.94 -2.54 16 8 C -0.04 -0.78 3.65 -104.66 -0.38 -1.16 16 9 C 0.16 2.86 5.38 -5.19 -0.03 2.83 16 10 N -0.55 -11.62 2.19 -175.99 -0.38 -12.01 16 11 C -0.24 -5.55 7.62 -15.06 -0.11 -5.66 16 12 H 0.09 2.03 6.41 -52.48 -0.34 1.69 16 13 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 14 N -0.91 -23.71 8.79 55.49 0.49 -23.22 16 15 Si 0.90 20.53 29.57 -169.99 -5.03 15.50 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.19 3.97 5.53 -5.20 -0.03 3.94 16 20 C 0.47 10.37 6.18 36.00 0.22 10.59 16 21 O -0.50 -12.07 13.75 -18.75 -0.26 -12.33 16 22 O -0.55 -10.70 13.42 -39.26 -0.53 -11.23 16 23 C -0.06 -0.91 8.07 -39.17 -0.32 -1.23 16 24 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 25 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 26 H 0.06 0.83 7.86 -51.93 -0.41 0.43 16 27 H 0.08 1.32 6.97 -51.93 -0.36 0.96 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.12 2.71 6.44 -51.93 -0.33 2.37 16 30 H 0.05 0.84 8.00 -51.93 -0.42 0.43 16 31 H 0.38 6.15 9.10 45.56 0.41 6.57 16 32 H 0.12 1.81 8.03 -52.48 -0.42 1.39 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -28.76 301.67 -6.88 -35.64 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -1.84 Total: 4.28 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -2.71 Total: 8.02 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.88 Total: -41.89 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.78 Total: -23.56 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -1.94 Total: -2.54 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.76 -6.88 -35.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.543 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds