Wall clock time and date at job start Tue Mar 31 2020 20:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39674 * 120.14403 * 331.48432 * 3 2 1 5 5 C 1.37880 * 119.85734 * 180.02562 * 4 3 2 6 6 C 1.38498 * 120.14308 * 0.03016 * 5 4 3 7 7 Br 1.89097 * 119.85875 * 179.97438 * 6 5 4 8 8 C 1.38444 * 120.28110 * 359.97123 * 6 5 4 9 9 C 1.50706 * 119.92771 * 180.02562 * 8 6 5 10 10 N 1.46502 * 109.47289 * 280.22117 * 9 8 6 11 11 C 1.36935 * 119.99839 * 95.06746 * 10 9 8 12 12 H 1.08004 * 120.00372 * 20.51653 * 11 10 9 13 13 C 1.38812 * 120.00139 * 200.51430 * 11 10 9 14 14 N 1.31619 * 119.99702 * 12.81979 * 13 11 10 15 15 Si 1.86802 * 120.00176 * 192.82203 * 13 11 10 16 16 H 1.48499 * 109.46847 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47139 * 119.99992 * 15 13 11 18 18 H 1.48504 * 109.46985 * 240.00062 * 15 13 11 19 19 C 1.46496 * 120.00204 * 275.07414 * 10 9 8 20 20 C 1.50693 * 109.47624 * 84.91828 * 19 10 9 21 21 O 1.20831 * 119.99822 * 0.02562 * 20 19 10 22 22 O 1.34229 * 120.00204 * 179.97438 * 20 19 10 23 23 C 1.37927 * 120.14254 * 0.27923 * 8 6 5 24 24 H 1.08007 * 120.07135 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.93048 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47265 * 160.22300 * 9 8 6 27 27 H 1.08996 * 109.46849 * 40.21937 * 9 8 6 28 28 H 0.97002 * 119.99972 * 180.02562 * 14 13 11 29 29 H 1.08995 * 109.47032 * 204.92745 * 19 10 9 30 30 H 1.09003 * 109.46533 * 324.92209 * 19 10 9 31 31 H 0.96705 * 116.99720 * 179.97438 * 22 20 19 32 32 H 1.08008 * 120.07129 * 179.72300 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.0604 0.5766 5 6 4.6487 -1.0534 0.5738 6 6 5.3377 0.0029 0.0014 7 35 7.2287 0.0045 0.0026 8 6 4.6479 1.0575 -0.5717 9 6 5.4057 2.2026 -1.1929 10 7 5.8622 3.1140 -0.1407 11 6 7.1249 2.9879 0.3739 12 1 7.8876 2.4687 -0.1875 13 6 7.4248 3.5274 1.6172 14 7 6.4554 3.9334 2.4096 15 14 9.2041 3.6775 2.1658 16 1 10.0963 3.1532 1.1007 17 1 9.5244 5.1046 2.4224 18 1 9.4062 2.8932 3.4106 19 6 4.9679 4.1602 0.3611 20 6 4.0815 3.5896 1.4379 21 8 4.1865 2.4282 1.7543 22 8 3.1762 4.3718 2.0465 23 6 3.2686 1.0651 -0.5708 24 1 2.7338 -1.8841 1.0245 25 1 5.1926 -1.8731 1.0197 26 1 4.7527 2.7398 -1.8807 27 1 6.2670 1.8154 -1.7371 28 1 6.6649 4.3107 3.2783 29 1 5.5599 4.9775 0.7728 30 1 4.3515 4.5341 -0.4565 31 1 2.6302 3.9609 2.7307 32 1 2.7316 1.8906 -1.0143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:42 Heat of formation + Delta-G solvation = -10.838059 kcal Electronic energy + Delta-G solvation = -21716.971358 eV Core-core repulsion = 18303.799705 eV Total energy + Delta-G solvation = -3413.171653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70834 -40.05197 -37.83013 -37.15058 -35.99281 -33.90023 -33.12116 -31.96317 -30.37396 -29.13759 -27.24785 -24.47565 -24.25432 -22.66760 -21.69229 -19.23545 -18.69798 -18.20712 -17.08415 -16.92917 -16.78170 -16.64949 -15.84285 -15.36979 -15.22514 -15.06071 -14.84502 -14.34598 -14.12185 -13.98089 -13.52715 -13.31521 -13.12656 -12.83822 -12.68980 -12.46668 -12.35850 -12.13991 -12.02086 -11.83365 -11.67339 -11.38134 -10.96156 -10.62372 -10.27963 -9.72748 -9.36441 -8.78925 -7.80060 -5.13671 -0.25393 0.46649 0.97182 1.49078 1.54907 1.56901 1.59595 1.88105 2.27601 2.57605 2.80790 2.93288 2.97096 3.48899 3.77324 3.91260 3.96599 4.28834 4.47520 4.60659 4.72279 4.78930 4.98757 5.08043 5.18847 5.28753 5.33298 5.40399 5.52457 5.83070 5.85088 6.34572 6.37963 6.39481 7.18586 7.78426 7.96699 8.27732 9.28868 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.007516 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.217751 B = 3724.675700 C = 5201.737221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.284 3.716 3 C -0.030 4.030 4 C -0.071 4.071 5 C -0.103 4.103 6 C -0.045 4.045 7 Br -0.045 7.045 8 C -0.058 4.058 9 C 0.161 3.839 10 N -0.563 5.563 11 C -0.215 4.215 12 H 0.091 0.909 13 C -0.040 4.040 14 N -0.930 5.930 15 Si 0.941 3.059 16 H -0.266 1.266 17 H -0.296 1.296 18 H -0.309 1.309 19 C 0.189 3.811 20 C 0.476 3.524 21 O -0.527 6.527 22 O -0.545 6.545 23 C -0.056 4.056 24 H 0.157 0.843 25 H 0.149 0.851 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.242 0.758 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.394 0.606 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -6.775 -7.234 10.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.030 4.030 3 C -0.034 4.034 4 C -0.092 4.092 5 C -0.123 4.123 6 C -0.126 4.126 7 Br 0.042 6.958 8 C -0.063 4.063 9 C 0.036 3.964 10 N -0.281 5.281 11 C -0.345 4.345 12 H 0.108 0.892 13 C -0.234 4.234 14 N -0.579 5.579 15 Si 0.773 3.227 16 H -0.190 1.190 17 H -0.223 1.223 18 H -0.237 1.237 19 C 0.060 3.940 20 C 0.317 3.683 21 O -0.414 6.414 22 O -0.357 6.357 23 C -0.079 4.079 24 H 0.175 0.825 25 H 0.167 0.833 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.251 0.749 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.526 -6.820 -7.354 10.343 hybrid contribution 0.599 -0.135 1.810 1.911 sum -1.926 -6.955 -5.544 9.101 Atomic orbital electron populations 1.81211 1.12796 1.09257 1.10326 1.25766 0.92565 0.92360 0.92302 1.16010 0.83548 0.98493 1.05381 1.21166 0.93296 0.97492 0.97266 1.21142 0.94128 0.98113 0.98925 1.22012 0.90826 0.97755 1.02048 1.96651 1.03172 1.98535 1.97471 1.20722 0.93511 0.94668 0.97389 1.20484 0.97558 0.87848 0.90551 1.44308 1.10983 1.31486 1.41372 1.19645 0.86306 1.29925 0.98632 0.89160 1.25244 0.98862 1.03083 0.96203 1.69796 1.30369 1.48328 1.09398 0.85564 0.83039 0.76548 0.77590 1.19035 1.22306 1.23739 1.20272 0.90361 0.91971 0.91364 1.25174 0.75977 0.84561 0.82624 1.90525 1.66791 1.20229 1.63847 1.84569 1.49550 1.48527 1.53015 1.20959 0.92951 0.96561 0.97394 0.82505 0.83289 0.89815 0.90168 0.94848 0.89012 0.90058 0.74883 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.61 18.54 19.00 0.35 -14.26 16 2 C 0.28 8.19 15.33 88.33 1.35 9.54 16 3 C -0.03 -0.85 5.73 -21.35 -0.12 -0.97 16 4 C -0.07 -1.80 9.76 22.53 0.22 -1.58 16 5 C -0.10 -2.91 9.77 22.25 0.22 -2.69 16 6 C -0.04 -1.48 6.23 22.38 0.14 -1.34 16 7 Br -0.04 -1.54 28.54 -20.37 -0.58 -2.12 16 8 C -0.06 -1.88 3.65 -19.89 -0.07 -1.95 16 9 C 0.16 5.29 5.38 85.63 0.46 5.75 16 10 N -0.56 -22.92 2.19 -710.70 -1.55 -24.47 16 11 C -0.21 -9.82 7.62 84.03 0.64 -9.18 16 12 H 0.09 4.04 6.41 -2.91 -0.02 4.03 16 13 C -0.04 -1.98 5.06 84.86 0.43 -1.55 16 14 N -0.93 -49.17 8.79 21.65 0.19 -48.98 16 15 Si 0.94 42.48 29.57 68.60 2.03 44.51 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 17 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 18 H -0.31 -14.75 7.11 99.48 0.71 -14.05 16 19 C 0.19 7.65 5.53 85.63 0.47 8.12 16 20 C 0.48 20.19 6.18 71.23 0.44 20.63 16 21 O -0.53 -24.60 13.75 21.95 0.30 -24.30 16 22 O -0.55 -20.56 13.42 -51.41 -0.69 -21.25 16 23 C -0.06 -1.66 8.07 22.53 0.18 -1.48 16 24 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 25 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 26 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 27 H 0.08 2.57 6.97 -2.39 -0.02 2.55 16 28 H 0.24 13.11 8.31 -92.71 -0.77 12.34 16 29 H 0.09 4.23 6.44 -2.39 -0.02 4.21 16 30 H 0.08 2.68 8.00 -2.39 -0.02 2.66 16 31 H 0.39 12.19 9.10 -74.05 -0.67 11.52 16 32 H 0.14 3.59 8.03 -2.91 -0.02 3.57 16 Total: -1.00 -60.33 301.67 4.93 -55.40 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.52 Total: 12.18 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 4.36 Total: 23.29 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -1.01 Total: -87.71 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -0.39 Total: -45.55 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 35 Polarization: -1.54 SS G_CDS: -0.58 Total: -2.12 kcal Total: -60.33 4.93 -55.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.562 kcal (2) G-P(sol) polarization free energy of solvation -60.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds