Wall clock time and date at job start Tue Mar 31 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86802 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47176 * 240.00219 * 3 2 1 5 5 H 1.48503 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47351 * 119.99960 * 3 2 1 7 7 C 1.38979 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00619 * 180.02562 * 7 2 1 9 9 N 1.37319 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.36593 * 126.07774 * 180.02562 * 9 7 2 11 11 C 1.35640 * 107.50494 * 180.02562 * 10 9 7 12 12 N 1.40566 * 126.07475 * 179.97438 * 11 10 9 13 13 S 1.65606 * 119.99842 * 135.00481 * 12 11 10 14 14 O 1.42105 * 106.40008 * 311.45722 * 13 12 11 15 15 O 1.42098 * 106.40370 * 178.53908 * 13 12 11 16 16 C 1.76193 * 107.21910 * 64.99878 * 13 12 11 17 17 C 1.38626 * 120.32228 * 90.00156 * 16 13 12 18 18 C 1.38587 * 118.48918 * 179.97438 * 17 16 13 19 19 C 1.39347 * 119.05816 * 0.02562 * 18 17 16 20 20 C 1.48075 * 119.72798 * 179.97438 * 19 18 17 21 21 O 1.21433 * 119.99787 * 0.02562 * 20 19 18 22 22 O 1.34675 * 119.99800 * 180.02562 * 20 19 18 23 23 N 1.32750 * 120.54797 * 0.02562 * 19 18 17 24 24 C 1.31506 * 121.63875 * 359.72394 * 23 19 18 25 25 C 1.40655 * 107.84704 * 0.22748 * 11 10 9 26 26 N 1.30938 * 108.40166 * 359.61438 * 25 11 10 27 27 H 0.96992 * 119.99578 * 359.97438 * 1 2 3 28 28 H 1.08007 * 126.24806 * 0.07084 * 10 9 7 29 29 H 0.97002 * 120.00547 * 315.00606 * 12 11 10 30 30 H 1.07998 * 120.75132 * 0.02562 * 17 16 13 31 31 H 1.07996 * 120.47177 * 179.97438 * 18 17 16 32 32 H 0.96703 * 116.99632 * 180.02562 * 22 20 19 33 33 H 1.08001 * 119.54246 * 180.29097 * 24 23 19 34 34 H 1.08001 * 125.79562 * 179.77263 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.1008 1.6964 -1.2125 5 1 1.2821 2.7465 -0.0006 6 1 3.1008 1.6964 1.2124 7 6 2.0080 -1.2036 -0.0005 8 1 3.0880 -1.2036 -0.0001 9 7 1.3214 -2.3928 -0.0005 10 6 1.8753 -3.6414 -0.0005 11 6 0.8583 -4.5389 -0.0011 12 7 0.9894 -5.9384 -0.0018 13 16 0.0568 -6.8579 1.0116 14 8 0.1593 -6.2654 2.2992 15 8 0.3962 -8.2128 0.7504 16 6 -1.6185 -6.6579 0.5038 17 6 -2.1705 -7.5107 -0.4394 18 6 -3.4918 -7.3192 -0.8108 19 6 -4.2154 -6.2814 -0.2268 20 6 -5.6281 -6.0631 -0.6132 21 8 -6.1515 -6.7872 -1.4355 22 8 -6.3324 -5.0613 -0.0526 23 7 -3.6485 -5.4862 0.6723 24 6 -2.3982 -5.6487 1.0462 25 6 -0.3508 -3.8202 -0.0068 26 7 -0.0714 -2.5410 -0.0012 27 1 -0.4849 0.8400 0.0004 28 1 2.9305 -3.8719 0.0005 29 1 1.6262 -6.3656 -0.5959 30 1 -1.5843 -8.3068 -0.8743 31 1 -3.9539 -7.9647 -1.5431 32 1 -7.2511 -4.9583 -0.3362 33 1 -1.9724 -4.9848 1.7840 34 1 -1.3414 -4.2505 -0.0121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:07 Heat of formation + Delta-G solvation = -27.987693 kcal Electronic energy + Delta-G solvation = -26378.515614 eV Core-core repulsion = 22213.364440 eV Total energy + Delta-G solvation = -4165.151174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05187 -39.79796 -39.57382 -37.12077 -36.42415 -35.74626 -34.71170 -33.15801 -33.09407 -32.09948 -30.39294 -27.55874 -26.08928 -25.00093 -24.08271 -22.20921 -20.97287 -20.21779 -19.39395 -18.76881 -18.24741 -17.89401 -17.33899 -17.09190 -16.69744 -16.09518 -15.73984 -15.55610 -15.06824 -14.66640 -14.32423 -14.18890 -13.88045 -13.59480 -13.51274 -13.21682 -13.05559 -12.28625 -12.10202 -11.89204 -11.85155 -11.82758 -11.73432 -11.36830 -11.27667 -11.23307 -11.04276 -10.64602 -10.59105 -10.34461 -9.87961 -9.70268 -9.45336 -8.98745 -8.32457 -7.16498 -6.68538 -4.41213 -0.22686 0.49844 0.85647 1.94793 2.50018 2.89104 2.98480 3.03758 3.08179 3.32766 3.43609 3.73874 3.78901 3.93194 3.95767 4.19163 4.50338 4.54986 4.63037 4.73778 4.89833 4.97406 5.34619 5.43007 5.55486 5.81462 6.07171 6.09582 6.14386 6.22066 6.62760 6.99059 7.10197 7.24161 7.38206 7.62311 7.68411 7.98061 8.50838 9.17780 9.40186 10.27215 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.003911 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.896291 B = 7157.336363 C = 9097.015968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.048 3.952 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.322 4.322 8 H 0.120 0.880 9 N -0.136 5.136 10 C -0.055 4.055 11 C -0.055 4.055 12 N -1.013 6.013 13 S 2.703 3.297 14 O -0.938 6.938 15 O -0.964 6.964 16 C -0.703 4.703 17 C 0.023 3.977 18 C -0.132 4.132 19 C 0.137 3.863 20 C 0.544 3.456 21 O -0.502 6.502 22 O -0.485 6.485 23 N -0.442 5.442 24 C 0.205 3.795 25 C -0.072 4.072 26 N -0.242 5.242 27 H 0.278 0.722 28 H 0.152 0.848 29 H 0.413 0.587 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.415 0.585 33 H 0.190 0.810 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -10.493 -1.757 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.455 4.455 8 H 0.138 0.862 9 N 0.096 4.904 10 C -0.207 4.207 11 C -0.163 4.163 12 N -0.768 5.768 13 S 2.788 3.212 14 O -0.927 6.927 15 O -0.954 6.954 16 C -0.789 4.789 17 C -0.004 4.004 18 C -0.153 4.153 19 C 0.000 4.000 20 C 0.385 3.615 21 O -0.390 6.390 22 O -0.295 6.295 23 N -0.154 5.154 24 C 0.044 3.956 25 C -0.249 4.249 26 N -0.072 5.072 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.249 0.751 30 H 0.182 0.818 31 H 0.178 0.822 32 H 0.274 0.726 33 H 0.207 0.793 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.681 -9.168 -0.701 10.808 hybrid contribution 0.237 -0.600 -1.363 1.508 sum -5.444 -9.768 -2.064 11.371 Atomic orbital electron populations 1.70175 1.06180 1.28481 1.34595 1.25659 0.95744 1.00412 0.95216 0.85855 0.79171 0.79342 0.79613 1.19093 1.20070 1.18983 1.19932 0.91844 0.80354 1.53354 0.86231 1.44617 1.03751 1.03701 1.38315 1.21637 0.97636 0.84920 1.16506 1.16665 0.93536 0.80562 1.25560 1.52052 1.53658 1.13418 1.57680 1.01908 0.72963 0.72445 0.73844 1.93618 1.84968 1.77638 1.36525 1.93574 1.82735 1.33353 1.85760 1.32570 1.28714 1.06645 1.10940 1.21382 0.94238 0.94745 0.90029 1.22143 0.94704 0.97932 1.00511 1.20346 0.91807 0.93269 0.94597 1.20444 0.85939 0.77499 0.77587 1.90916 1.70389 1.46037 1.31634 1.84720 1.30223 1.49632 1.64886 1.67892 1.12170 1.24464 1.10864 1.22874 0.87716 0.91315 0.93668 1.23741 0.96327 0.92822 1.11961 1.78252 0.90656 1.13812 1.24514 0.91157 0.83041 0.75095 0.81813 0.82230 0.72622 0.79318 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.27 11.81 55.49 0.66 -19.61 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 17.99 29.55 -169.99 -5.02 12.97 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.32 -8.02 10.25 -14.82 -0.15 -8.17 16 8 H 0.12 2.64 7.83 -52.49 -0.41 2.23 16 9 N -0.14 -3.48 3.74 -11.40 -0.04 -3.53 16 10 C -0.05 -1.20 11.50 -16.36 -0.19 -1.39 16 11 C -0.06 -1.13 6.41 -83.87 -0.54 -1.67 16 12 N -1.01 -15.82 5.93 32.32 0.19 -15.63 16 13 S 2.70 41.05 5.63 -107.50 -0.60 40.44 16 14 O -0.94 -17.40 17.02 -57.17 -0.97 -18.38 16 15 O -0.96 -14.73 17.35 -57.17 -0.99 -15.72 16 16 C -0.70 -9.93 5.24 -39.31 -0.21 -10.14 16 17 C 0.02 0.26 9.64 -39.31 -0.38 -0.11 16 18 C -0.13 -1.53 9.63 -39.04 -0.38 -1.90 16 19 C 0.14 1.88 6.75 -83.02 -0.56 1.32 16 20 C 0.54 6.87 8.32 34.77 0.29 7.16 16 21 O -0.50 -6.79 17.11 -19.21 -0.33 -7.12 16 22 O -0.48 -5.20 13.24 -40.42 -0.54 -5.73 16 23 N -0.44 -6.93 10.12 -9.81 -0.10 -7.03 16 24 C 0.20 3.19 7.53 -17.56 -0.13 3.06 16 25 C -0.07 -1.62 10.73 -17.02 -0.18 -1.80 16 26 N -0.24 -6.40 10.40 30.81 0.32 -6.08 16 27 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.15 2.79 8.06 -52.48 -0.42 2.37 16 29 H 0.41 5.15 8.96 -34.47 -0.31 4.84 16 30 H 0.16 1.41 7.70 -52.49 -0.40 1.00 16 31 H 0.16 1.45 7.64 -52.49 -0.40 1.05 16 32 H 0.42 2.11 9.11 45.56 0.42 2.53 16 33 H 0.19 3.02 7.20 -52.49 -0.38 2.64 16 34 H 0.15 2.99 4.22 -52.49 -0.22 2.77 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -34.95 323.74 -6.34 -41.29 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -1.27 Total: 11.81 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.52 Total: -12.58 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 1.03 Total: -51.87 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.83 Total: -46.95 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.97 kcal Atomic # 16 Polarization: 41.05 SS G_CDS: -0.60 Total: 40.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.95 -6.34 -41.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.304 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds