Wall clock time and date at job start Tue Mar 31 2020 21:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86802 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47176 * 240.00219 * 3 2 1 5 5 H 1.48503 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47351 * 119.99960 * 3 2 1 7 7 C 1.38979 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00619 * 180.02562 * 7 2 1 9 9 N 1.37319 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.36593 * 126.07774 * 180.02562 * 9 7 2 11 11 C 1.35640 * 107.50494 * 180.02562 * 10 9 7 12 12 N 1.40566 * 126.07475 * 179.97438 * 11 10 9 13 13 S 1.65606 * 119.99842 * 135.00481 * 12 11 10 14 14 O 1.42105 * 106.40008 * 311.45722 * 13 12 11 15 15 O 1.42098 * 106.40370 * 178.53908 * 13 12 11 16 16 C 1.76193 * 107.21910 * 64.99878 * 13 12 11 17 17 C 1.38626 * 120.32228 * 90.00156 * 16 13 12 18 18 C 1.38587 * 118.48918 * 179.97438 * 17 16 13 19 19 C 1.39347 * 119.05816 * 0.02562 * 18 17 16 20 20 C 1.48075 * 119.72798 * 179.97438 * 19 18 17 21 21 O 1.21433 * 119.99787 * 0.02562 * 20 19 18 22 22 O 1.34675 * 119.99800 * 180.02562 * 20 19 18 23 23 N 1.32750 * 120.54797 * 0.02562 * 19 18 17 24 24 C 1.31506 * 121.63875 * 359.72394 * 23 19 18 25 25 C 1.40655 * 107.84704 * 0.22748 * 11 10 9 26 26 N 1.30938 * 108.40166 * 359.61438 * 25 11 10 27 27 H 0.96992 * 119.99578 * 359.97438 * 1 2 3 28 28 H 1.08007 * 126.24806 * 0.07084 * 10 9 7 29 29 H 0.97002 * 120.00547 * 315.00606 * 12 11 10 30 30 H 1.07998 * 120.75132 * 0.02562 * 17 16 13 31 31 H 1.07996 * 120.47177 * 179.97438 * 18 17 16 32 32 H 0.96703 * 116.99632 * 180.02562 * 22 20 19 33 33 H 1.08001 * 119.54246 * 180.29097 * 24 23 19 34 34 H 1.08001 * 125.79562 * 179.77263 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.1008 1.6964 -1.2125 5 1 1.2821 2.7465 -0.0006 6 1 3.1008 1.6964 1.2124 7 6 2.0080 -1.2036 -0.0005 8 1 3.0880 -1.2036 -0.0001 9 7 1.3214 -2.3928 -0.0005 10 6 1.8753 -3.6414 -0.0005 11 6 0.8583 -4.5389 -0.0011 12 7 0.9894 -5.9384 -0.0018 13 16 0.0568 -6.8579 1.0116 14 8 0.1593 -6.2654 2.2992 15 8 0.3962 -8.2128 0.7504 16 6 -1.6185 -6.6579 0.5038 17 6 -2.1705 -7.5107 -0.4394 18 6 -3.4918 -7.3192 -0.8108 19 6 -4.2154 -6.2814 -0.2268 20 6 -5.6281 -6.0631 -0.6132 21 8 -6.1515 -6.7872 -1.4355 22 8 -6.3324 -5.0613 -0.0526 23 7 -3.6485 -5.4862 0.6723 24 6 -2.3982 -5.6487 1.0462 25 6 -0.3508 -3.8202 -0.0068 26 7 -0.0714 -2.5410 -0.0012 27 1 -0.4849 0.8400 0.0004 28 1 2.9305 -3.8719 0.0005 29 1 1.6262 -6.3656 -0.5959 30 1 -1.5843 -8.3068 -0.8743 31 1 -3.9539 -7.9647 -1.5431 32 1 -7.2511 -4.9583 -0.3362 33 1 -1.9724 -4.9848 1.7840 34 1 -1.3414 -4.2505 -0.0121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:06 Heat of formation + Delta-G solvation = -57.101549 kcal Electronic energy + Delta-G solvation = -26379.778085 eV Core-core repulsion = 22213.364440 eV Total energy + Delta-G solvation = -4166.413645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07462 -41.47292 -40.64925 -38.42755 -37.34589 -37.07594 -36.28001 -34.83950 -34.15078 -33.18077 -32.17815 -29.26910 -27.15530 -26.71901 -25.18201 -23.21102 -22.70714 -21.80743 -20.77343 -19.78704 -19.59976 -19.09855 -18.61909 -18.34913 -17.85389 -17.44223 -17.10825 -17.02380 -16.21416 -15.97833 -15.67377 -15.33588 -15.26484 -15.12224 -14.73959 -14.53577 -14.22016 -13.76124 -13.52717 -13.39507 -13.28192 -13.19412 -12.86150 -12.77184 -12.73460 -12.54925 -12.23538 -12.13132 -11.91349 -11.56160 -11.19834 -10.98973 -10.83617 -10.67000 -10.16293 -8.86415 -8.46693 -6.27543 -1.28925 -0.74412 -0.16302 0.93793 1.31192 1.42782 1.57806 1.61035 1.73550 1.82919 2.11133 2.18082 2.30980 2.62498 2.81888 2.89789 3.06987 3.09916 3.54020 3.62758 3.76231 3.93413 4.18069 4.37109 4.42460 4.53433 4.59204 4.64126 4.90830 5.07957 5.22706 5.24709 5.40764 5.90613 6.07657 6.22231 6.31644 6.74310 6.79745 7.41457 7.60149 8.51861 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.003911 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.896291 B = 7157.336363 C = 9097.015968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.001 4.001 3 Si 1.015 2.985 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.165 5.165 10 C -0.060 4.060 11 C -0.038 4.038 12 N -1.004 6.004 13 S 2.726 3.274 14 O -0.974 6.974 15 O -0.958 6.958 16 C -0.708 4.708 17 C 0.033 3.967 18 C -0.118 4.118 19 C 0.118 3.882 20 C 0.549 3.451 21 O -0.513 6.513 22 O -0.490 6.490 23 N -0.466 5.466 24 C 0.186 3.814 25 C -0.078 4.078 26 N -0.294 5.294 27 H 0.277 0.723 28 H 0.185 0.815 29 H 0.431 0.569 30 H 0.202 0.798 31 H 0.191 0.809 32 H 0.437 0.563 33 H 0.174 0.826 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 -12.065 -2.835 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.213 4.213 3 Si 0.834 3.166 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.486 4.486 8 H 0.158 0.842 9 N 0.066 4.934 10 C -0.211 4.211 11 C -0.146 4.146 12 N -0.761 5.761 13 S 2.813 3.187 14 O -0.964 6.964 15 O -0.948 6.948 16 C -0.796 4.796 17 C 0.007 3.993 18 C -0.138 4.138 19 C -0.018 4.018 20 C 0.391 3.609 21 O -0.401 6.401 22 O -0.303 6.303 23 N -0.178 5.178 24 C 0.025 3.975 25 C -0.256 4.256 26 N -0.125 5.125 27 H 0.087 0.913 28 H 0.202 0.798 29 H 0.270 0.730 30 H 0.219 0.781 31 H 0.208 0.792 32 H 0.300 0.700 33 H 0.191 0.809 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.902 -10.759 -1.787 11.957 hybrid contribution -0.102 -0.347 -1.040 1.102 sum -5.004 -11.106 -2.827 12.505 Atomic orbital electron populations 1.70342 1.08196 1.29264 1.37038 1.26762 0.96434 1.04041 0.94058 0.84709 0.77635 0.74098 0.80178 1.17799 1.20345 1.18006 1.20587 0.93023 0.80870 1.54099 0.84206 1.44858 1.03568 1.04887 1.40062 1.22367 0.99552 0.84256 1.14948 1.16633 0.92298 0.82397 1.23252 1.51941 1.54526 1.11344 1.58271 1.01060 0.72859 0.71944 0.72831 1.93581 1.85730 1.78346 1.38757 1.93579 1.82981 1.32654 1.85581 1.32328 1.27670 1.07328 1.12234 1.21886 0.94498 0.94449 0.88481 1.22518 0.94405 0.97019 0.99904 1.20758 0.92661 0.93802 0.94578 1.20276 0.85688 0.77604 0.77362 1.90909 1.70551 1.46533 1.32144 1.84680 1.32026 1.48856 1.64711 1.67814 1.12313 1.25641 1.12041 1.22693 0.88280 0.92162 0.94327 1.24120 0.97936 0.92318 1.11177 1.78150 0.92108 1.15986 1.26219 0.91292 0.79809 0.73045 0.78099 0.79196 0.69969 0.80939 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.04 11.81 21.66 0.26 -44.78 16 2 C 0.00 -0.03 5.50 84.95 0.47 0.44 16 3 Si 1.01 37.12 29.55 68.60 2.03 39.15 16 4 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.28 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.35 -17.87 10.25 84.01 0.86 -17.01 16 8 H 0.14 6.12 7.83 -2.91 -0.02 6.10 16 9 N -0.17 -8.57 3.74 -189.97 -0.71 -9.28 16 10 C -0.06 -2.57 11.50 83.35 0.96 -1.61 16 11 C -0.04 -1.50 6.41 37.73 0.24 -1.26 16 12 N -1.00 -29.42 5.93 -51.65 -0.31 -29.73 16 13 S 2.73 78.39 5.63 -56.49 -0.32 78.07 16 14 O -0.97 -35.93 17.02 -128.00 -2.18 -38.11 16 15 O -0.96 -26.46 17.35 -128.00 -2.22 -28.68 16 16 C -0.71 -18.99 5.24 22.45 0.12 -18.88 16 17 C 0.03 0.67 9.64 22.45 0.22 0.88 16 18 C -0.12 -2.39 9.63 22.62 0.22 -2.17 16 19 C 0.12 3.11 6.75 41.88 0.28 3.39 16 20 C 0.55 13.17 8.32 70.43 0.59 13.76 16 21 O -0.51 -12.91 17.11 20.05 0.34 -12.56 16 22 O -0.49 -10.07 13.24 -55.84 -0.74 -10.81 16 23 N -0.47 -14.64 10.12 -184.94 -1.87 -16.51 16 24 C 0.19 5.86 7.53 84.82 0.64 6.50 16 25 C -0.08 -3.59 10.73 85.42 0.92 -2.67 16 26 N -0.29 -16.06 10.40 -56.45 -0.59 -16.65 16 27 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.18 6.43 8.06 -2.91 -0.02 6.40 16 29 H 0.43 9.51 8.96 -96.74 -0.87 8.64 16 30 H 0.20 2.48 7.70 -2.91 -0.02 2.46 16 31 H 0.19 2.69 7.64 -2.91 -0.02 2.66 16 32 H 0.44 3.90 9.11 -74.06 -0.67 3.22 16 33 H 0.17 5.85 7.20 -2.91 -0.02 5.83 16 34 H 0.17 6.77 4.22 -2.91 -0.01 6.76 16 Total: -1.00 -77.60 323.74 -1.12 -78.72 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.31 Total: 29.81 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.50 Total: -18.64 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -3.22 Total: -116.96 kcal Atomic # 8 Polarization: -85.36 SS G_CDS: -4.80 Total: -90.16 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 78.39 SS G_CDS: -0.32 Total: 78.07 kcal Total: -77.60 -1.12 -78.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.616 kcal (2) G-P(sol) polarization free energy of solvation -77.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds