Wall clock time and date at job start Tue Mar 31 2020 20:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48501 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47086 * 119.99674 * 3 2 1 6 6 H 1.48491 * 109.47072 * 240.00027 * 3 2 1 7 7 C 1.40309 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 159.33536 * 7 2 1 9 9 C 1.40530 * 120.00320 * 339.34545 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.81209 * 9 7 2 11 11 C 1.32762 * 114.43297 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36200 * 359.97438 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.51826 * 9 7 2 14 14 C 1.46244 * 125.22461 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99665 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99552 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47128 * 179.97438 * 17 16 14 19 19 N 1.29400 * 124.70186 * 89.70009 * 18 17 16 20 20 C 1.30917 * 117.46504 * 179.83873 * 19 18 17 21 21 C 1.36761 * 113.93273 * 0.44245 * 20 19 18 22 22 C 1.46502 * 126.17836 * 179.76984 * 21 20 19 23 23 O 1.21606 * 119.99921 * 0.02562 * 22 21 20 24 24 O 1.34875 * 119.99596 * 180.02562 * 22 21 20 25 25 S 1.70918 * 124.71153 * 270.00455 * 18 17 16 26 26 H 0.96999 * 120.00259 * 174.00398 * 1 2 3 27 27 H 1.07997 * 122.78433 * 359.92679 * 10 9 7 28 28 H 1.08005 * 124.32243 * 179.97438 * 11 10 9 29 29 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 30 30 H 1.08996 * 109.47568 * 300.00237 * 17 16 14 31 31 H 1.09005 * 109.46945 * 60.00480 * 17 16 14 32 32 H 1.07999 * 123.03428 * 180.21968 * 20 19 18 33 33 H 0.96704 * 116.99913 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 -0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0942 1.6963 -1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0358 -1.2453 -0.3295 9 6 1.3730 -2.3929 0.4303 10 6 0.2445 -2.4120 1.3276 11 6 -0.2109 -3.6264 1.6115 12 16 0.7196 -4.8663 0.7892 13 6 1.7615 -3.6723 0.0312 14 6 2.8669 -3.9730 -0.8779 15 8 3.5301 -3.0677 -1.3503 16 7 3.1507 -5.2522 -1.1936 17 6 4.2577 -5.5534 -2.1047 18 6 4.3635 -7.0451 -2.2909 19 7 3.7448 -7.7190 -3.2061 20 6 3.9424 -9.0127 -3.2407 21 6 4.7902 -9.4706 -2.2702 22 6 5.1925 -10.8636 -2.0603 23 8 4.7626 -11.7370 -2.7890 24 8 6.0398 -11.1771 -1.0588 25 16 5.3112 -8.0825 -1.3179 26 1 -0.4850 -0.8354 -0.0877 27 1 -0.1935 -1.5131 1.7356 28 1 -1.0473 -3.8257 2.2650 29 1 2.6221 -5.9733 -0.8176 30 1 4.0744 -5.0787 -3.0686 31 1 5.1885 -5.1733 -1.6837 32 1 3.4751 -9.6603 -3.9677 33 1 6.2761 -12.1096 -0.9594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:56 Heat of formation + Delta-G solvation = -63.265454 kcal Electronic energy + Delta-G solvation = -22663.131002 eV Core-core repulsion = 18906.910190 eV Total energy + Delta-G solvation = -3756.220812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69435 -39.78233 -38.43140 -36.55586 -36.45718 -34.25997 -33.09275 -31.26731 -29.31473 -28.24503 -25.91705 -24.52945 -23.25338 -22.45128 -20.29426 -19.96078 -19.37879 -19.09082 -18.19545 -17.45511 -16.94476 -16.48110 -16.16876 -15.46043 -15.17228 -14.71152 -14.35230 -14.30090 -14.10329 -13.86271 -13.69552 -13.14388 -13.01803 -12.41806 -12.26301 -12.03653 -11.94632 -11.90506 -11.46571 -11.20508 -11.11651 -10.77545 -10.48148 -10.15828 -10.06758 -9.93894 -9.81288 -9.43019 -9.20601 -8.63291 -8.53011 -7.84821 -7.42181 -7.38827 -4.66853 -0.30460 0.78485 1.25495 1.85726 1.95886 2.53772 2.58626 2.87886 3.01802 3.07597 3.28905 3.47918 3.60511 3.66575 3.86449 4.05620 4.29075 4.55106 4.70015 5.00230 5.02441 5.40119 5.67134 5.70824 5.78420 5.96710 6.30109 6.66870 6.90640 6.96042 7.15157 7.20128 7.25647 7.39307 7.68330 7.85455 8.25895 8.38402 8.63344 9.38015 9.70048 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.002609 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.832368 B =10730.182744 C =11480.584560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.028 3.972 3 Si 1.074 2.926 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.420 4.420 8 H 0.111 0.889 9 C 0.113 3.887 10 C -0.143 4.143 11 C -0.183 4.183 12 S -0.038 6.038 13 C -0.438 4.438 14 C 0.603 3.397 15 O -0.560 6.560 16 N -0.747 5.747 17 C 0.200 3.800 18 C 0.051 3.949 19 N -0.465 5.465 20 C 0.143 3.857 21 C -0.310 4.310 22 C 0.570 3.430 23 O -0.504 6.504 24 O -0.511 6.511 25 S 0.246 5.754 26 H 0.301 0.699 27 H 0.132 0.868 28 H 0.142 0.858 29 H 0.392 0.608 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.193 0.807 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 -13.730 -0.008 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.196 4.196 3 Si 0.896 3.104 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.450 4.450 8 H 0.129 0.871 9 C 0.102 3.898 10 C -0.176 4.176 11 C -0.318 4.318 12 S 0.218 5.782 13 C -0.556 4.556 14 C 0.402 3.598 15 O -0.442 6.442 16 N -0.403 5.403 17 C 0.072 3.928 18 C -0.222 4.222 19 N -0.179 5.179 20 C -0.019 4.019 21 C -0.433 4.433 22 C 0.412 3.588 23 O -0.394 6.394 24 O -0.323 6.323 25 S 0.505 5.495 26 H 0.116 0.884 27 H 0.149 0.851 28 H 0.159 0.841 29 H 0.226 0.774 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.209 0.791 33 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 8.330 -12.305 -0.012 14.860 hybrid contribution -0.563 -2.035 -0.373 2.144 sum 7.767 -14.340 -0.385 16.313 Atomic orbital electron populations 1.70440 1.08414 1.34636 1.26149 1.27589 0.95654 1.05326 0.91058 0.83499 0.75589 0.72631 0.78730 1.19616 1.19551 1.19341 1.21012 1.02115 0.91315 1.30583 0.87149 1.17880 0.89521 0.92305 0.90057 1.21589 0.98659 0.96961 1.00398 1.24945 1.04422 0.96552 1.05849 1.82800 1.31327 1.12581 1.51537 1.22286 1.14543 0.94537 1.24274 1.16757 0.82862 0.80344 0.79885 1.90677 1.52570 1.44835 1.56162 1.45829 1.34874 1.08916 1.50677 1.19671 0.92863 0.83056 0.97199 1.27876 0.97040 1.02587 0.94714 1.66305 1.23017 1.06249 1.22363 1.22632 0.93164 0.90128 0.95985 1.24997 1.13912 0.96392 1.08037 1.18966 0.75421 0.86934 0.77438 1.90962 1.53713 1.48896 1.45806 1.84602 1.60612 1.36325 1.50753 1.84241 1.41200 0.95201 1.28885 0.88424 0.85068 0.84067 0.77449 0.88469 0.89393 0.79068 0.72113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.02 12.48 55.57 0.69 -18.33 16 2 C 0.03 0.68 5.23 -17.28 -0.09 0.59 16 3 Si 1.07 20.61 29.99 -169.99 -5.10 15.51 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.42 -10.96 8.44 -37.94 -0.32 -11.28 16 8 H 0.11 3.03 6.14 -52.49 -0.32 2.70 16 9 C 0.11 2.88 5.41 -106.21 -0.57 2.31 16 10 C -0.14 -3.27 8.19 -39.12 -0.32 -3.59 16 11 C -0.18 -3.74 11.07 28.86 0.32 -3.42 16 12 S -0.04 -0.78 22.25 -107.50 -2.39 -3.17 16 13 C -0.44 -10.63 6.51 -35.88 -0.23 -10.87 16 14 C 0.60 14.11 7.76 -13.05 -0.10 14.01 16 15 O -0.56 -14.56 14.46 5.13 0.07 -14.49 16 16 N -0.75 -13.77 5.54 -62.93 -0.35 -14.12 16 17 C 0.20 3.02 6.24 -5.19 -0.03 2.99 16 18 C 0.05 0.66 6.74 -13.30 -0.09 0.57 16 19 N -0.47 -6.27 10.50 -11.26 -0.12 -6.39 16 20 C 0.14 1.64 11.16 -18.48 -0.21 1.43 16 21 C -0.31 -3.40 6.52 -36.79 -0.24 -3.64 16 22 C 0.57 5.87 8.30 34.06 0.28 6.16 16 23 O -0.50 -6.31 17.66 -19.35 -0.34 -6.65 16 24 O -0.51 -3.74 13.33 -40.97 -0.55 -4.29 16 25 S 0.25 2.58 23.04 -107.50 -2.48 0.11 16 26 H 0.30 7.53 6.22 -40.82 -0.25 7.28 16 27 H 0.13 2.95 6.77 -52.49 -0.36 2.60 16 28 H 0.14 2.40 8.06 -52.48 -0.42 1.98 16 29 H 0.39 6.82 7.54 -40.82 -0.31 6.51 16 30 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.42 1.03 9.11 45.56 0.42 1.44 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -31.12 330.34 -8.49 -39.61 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -1.31 Total: 11.97 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.61 Total: -4.74 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.23 Total: -38.83 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.81 Total: -25.43 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.10 Total: 15.51 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -4.87 Total: -3.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.12 -8.49 -39.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.653 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds