Wall clock time and date at job start Tue Mar 31 2020 20:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48501 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47086 * 119.99674 * 3 2 1 6 6 H 1.48491 * 109.47072 * 240.00027 * 3 2 1 7 7 C 1.40309 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 159.33536 * 7 2 1 9 9 C 1.40530 * 120.00320 * 339.34545 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.81209 * 9 7 2 11 11 C 1.32762 * 114.43297 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36200 * 359.97438 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.51826 * 9 7 2 14 14 C 1.46244 * 125.22461 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99665 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99552 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47128 * 179.97438 * 17 16 14 19 19 N 1.29400 * 124.70186 * 89.70009 * 18 17 16 20 20 C 1.30917 * 117.46504 * 179.83873 * 19 18 17 21 21 C 1.36761 * 113.93273 * 0.44245 * 20 19 18 22 22 C 1.46502 * 126.17836 * 179.76984 * 21 20 19 23 23 O 1.21606 * 119.99921 * 0.02562 * 22 21 20 24 24 O 1.34875 * 119.99596 * 180.02562 * 22 21 20 25 25 S 1.70918 * 124.71153 * 270.00455 * 18 17 16 26 26 H 0.96999 * 120.00259 * 174.00398 * 1 2 3 27 27 H 1.07997 * 122.78433 * 359.92679 * 10 9 7 28 28 H 1.08005 * 124.32243 * 179.97438 * 11 10 9 29 29 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 30 30 H 1.08996 * 109.47568 * 300.00237 * 17 16 14 31 31 H 1.09005 * 109.46945 * 60.00480 * 17 16 14 32 32 H 1.07999 * 123.03428 * 180.21968 * 20 19 18 33 33 H 0.96704 * 116.99913 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 -0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0942 1.6963 -1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0358 -1.2453 -0.3295 9 6 1.3730 -2.3929 0.4303 10 6 0.2445 -2.4120 1.3276 11 6 -0.2109 -3.6264 1.6115 12 16 0.7196 -4.8663 0.7892 13 6 1.7615 -3.6723 0.0312 14 6 2.8669 -3.9730 -0.8779 15 8 3.5301 -3.0677 -1.3503 16 7 3.1507 -5.2522 -1.1936 17 6 4.2577 -5.5534 -2.1047 18 6 4.3635 -7.0451 -2.2909 19 7 3.7448 -7.7190 -3.2061 20 6 3.9424 -9.0127 -3.2407 21 6 4.7902 -9.4706 -2.2702 22 6 5.1925 -10.8636 -2.0603 23 8 4.7626 -11.7370 -2.7890 24 8 6.0398 -11.1771 -1.0588 25 16 5.3112 -8.0825 -1.3179 26 1 -0.4850 -0.8354 -0.0877 27 1 -0.1935 -1.5131 1.7356 28 1 -1.0473 -3.8257 2.2650 29 1 2.6221 -5.9733 -0.8176 30 1 4.0744 -5.0787 -3.0686 31 1 5.1885 -5.1733 -1.6837 32 1 3.4751 -9.6603 -3.9677 33 1 6.2761 -12.1096 -0.9594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:56 Heat of formation + Delta-G solvation = -85.567900 kcal Electronic energy + Delta-G solvation = -22664.098108 eV Core-core repulsion = 18906.910190 eV Total energy + Delta-G solvation = -3757.187919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55125 -40.74492 -40.10676 -38.29627 -37.20744 -35.81254 -34.88301 -32.40952 -30.95971 -29.57276 -27.53111 -25.69686 -24.37244 -23.95517 -22.00285 -20.96472 -20.83407 -20.34533 -19.49233 -18.50765 -18.22270 -17.83214 -17.08924 -16.78695 -16.49329 -16.11578 -15.85872 -15.64239 -15.53898 -15.21131 -14.94379 -14.64998 -14.21995 -14.01228 -13.90116 -13.65406 -13.18751 -12.76618 -12.75618 -12.74588 -12.51922 -12.06505 -12.01533 -11.87438 -11.52929 -11.04412 -10.97972 -10.86110 -10.59735 -10.19220 -10.14002 -9.67645 -9.23754 -9.14269 -6.55058 -1.22967 -0.11906 0.17741 0.34062 0.96473 1.19610 1.40413 1.49553 1.65952 1.70194 1.81444 1.83692 1.89800 2.27060 2.43628 2.47154 2.80117 3.15298 3.56926 3.83416 4.18514 4.22262 4.29609 4.39870 4.62141 4.78882 4.91791 5.17347 5.32401 5.36066 5.36693 5.44769 5.84924 5.92049 6.33431 6.47351 6.57444 6.77965 6.80640 7.58605 7.82929 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.002609 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.832368 B =10730.182744 C =11480.584560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.002 3.998 3 Si 1.119 2.881 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.267 1.267 7 C -0.461 4.461 8 H 0.086 0.914 9 C 0.091 3.909 10 C -0.172 4.172 11 C -0.166 4.166 12 S 0.021 5.979 13 C -0.470 4.470 14 C 0.597 3.403 15 O -0.594 6.594 16 N -0.733 5.733 17 C 0.201 3.799 18 C 0.025 3.975 19 N -0.485 5.485 20 C 0.133 3.867 21 C -0.311 4.311 22 C 0.578 3.422 23 O -0.528 6.528 24 O -0.502 6.502 25 S 0.309 5.691 26 H 0.291 0.709 27 H 0.129 0.871 28 H 0.183 0.817 29 H 0.399 0.601 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.206 0.794 33 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.423 -15.669 1.076 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.218 4.218 3 Si 0.935 3.065 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.104 0.896 9 C 0.080 3.920 10 C -0.205 4.205 11 C -0.301 4.301 12 S 0.277 5.723 13 C -0.589 4.589 14 C 0.394 3.606 15 O -0.480 6.480 16 N -0.387 5.387 17 C 0.074 3.926 18 C -0.247 4.247 19 N -0.200 5.200 20 C -0.028 4.028 21 C -0.434 4.434 22 C 0.421 3.579 23 O -0.420 6.420 24 O -0.317 6.317 25 S 0.568 5.432 26 H 0.104 0.896 27 H 0.147 0.853 28 H 0.200 0.800 29 H 0.233 0.767 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.223 0.777 33 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 8.713 -14.323 1.092 16.800 hybrid contribution -0.608 -1.763 -0.683 1.986 sum 8.105 -16.086 0.409 18.017 Atomic orbital electron populations 1.70530 1.08667 1.33844 1.27897 1.28766 0.95760 1.07609 0.89673 0.82976 0.74864 0.69448 0.79248 1.18455 1.18079 1.19220 1.20998 1.01562 0.93066 1.33478 0.89617 1.18335 0.90570 0.92800 0.90320 1.21477 0.99317 0.98061 1.01618 1.25470 1.04358 0.95618 1.04656 1.82456 1.29408 1.10478 1.49919 1.22846 1.15447 0.96055 1.24554 1.16886 0.82576 0.81445 0.79689 1.90649 1.53689 1.46329 1.57317 1.45581 1.35380 1.07412 1.50329 1.19662 0.91955 0.85102 0.95844 1.27403 0.99175 1.01717 0.96403 1.66268 1.23610 1.07257 1.22862 1.22814 0.93687 0.89576 0.96717 1.25239 1.13250 0.97216 1.07735 1.18807 0.75352 0.86264 0.77524 1.90963 1.54756 1.49424 1.46854 1.84553 1.59396 1.38553 1.49217 1.83997 1.38967 0.93535 1.26721 0.89601 0.85321 0.79979 0.76677 0.89804 0.88264 0.77710 0.69464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.65 12.48 21.89 0.27 -39.38 16 2 C 0.00 0.08 5.23 85.37 0.45 0.53 16 3 Si 1.12 42.29 29.99 68.60 2.06 44.34 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.46 -25.10 8.44 23.33 0.20 -24.91 16 8 H 0.09 4.99 6.14 -2.91 -0.02 4.97 16 9 C 0.09 4.74 5.41 -20.89 -0.11 4.63 16 10 C -0.17 -7.87 8.19 22.61 0.19 -7.68 16 11 C -0.17 -6.45 11.07 66.64 0.74 -5.71 16 12 S 0.02 0.82 22.25 -56.49 -1.26 -0.44 16 13 C -0.47 -23.06 6.51 24.67 0.16 -22.90 16 14 C 0.60 28.48 7.76 86.32 0.67 29.15 16 15 O -0.59 -32.19 14.46 -4.54 -0.07 -32.25 16 16 N -0.73 -26.91 5.54 -471.20 -2.61 -29.52 16 17 C 0.20 6.07 6.24 85.63 0.53 6.60 16 18 C 0.02 0.62 6.74 88.47 0.60 1.22 16 19 N -0.48 -12.63 10.50 -189.53 -1.99 -14.62 16 20 C 0.13 2.88 11.16 84.48 0.94 3.82 16 21 C -0.31 -6.12 6.52 24.08 0.16 -5.97 16 22 C 0.58 10.46 8.30 69.98 0.58 11.04 16 23 O -0.53 -12.19 17.66 19.49 0.34 -11.84 16 24 O -0.50 -5.74 13.33 -57.88 -0.77 -6.51 16 25 S 0.31 5.77 23.04 -56.49 -1.30 4.47 16 26 H 0.29 14.99 6.22 -92.71 -0.58 14.42 16 27 H 0.13 5.88 6.77 -2.91 -0.02 5.86 16 28 H 0.18 5.47 8.06 -2.91 -0.02 5.45 16 29 H 0.40 13.45 7.54 -92.71 -0.70 12.75 16 30 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.21 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.44 0.68 9.11 -74.05 -0.67 0.01 16 Total: -1.00 -69.29 330.34 -0.18 -69.47 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.05 Total: 26.45 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.10 Total: -10.18 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -4.33 Total: -83.52 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.49 Total: -50.60 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.06 Total: 44.34 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -2.56 Total: 4.03 kcal Total: -69.29 -0.18 -69.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.095 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds