Wall clock time and date at job start Tue Mar 31 2020 20:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46966 * 60.00398 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47227 * 300.00019 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.38835 * 119.99943 * 84.99553 * 12 2 1 14 14 N 1.32320 * 119.77551 * 0.02562 * 13 12 2 15 15 C 1.31952 * 121.75207 * 179.97438 * 14 13 12 16 16 C 1.38251 * 121.10762 * 359.97438 * 15 14 13 17 17 Br 1.89104 * 120.28950 * 180.02562 * 16 15 14 18 18 C 1.38669 * 119.42794 * 0.02562 * 16 15 14 19 19 C 1.39479 * 118.38588 * 359.74193 * 18 16 15 20 20 C 1.48357 * 120.56017 * 180.24955 * 19 18 16 21 21 N 1.34080 * 126.67732 * 179.97438 * 20 19 18 22 22 N 1.28986 * 107.26496 * 179.83582 * 21 20 19 23 23 N 1.28730 * 108.95509 * 0.43027 * 22 21 20 24 24 H 0.96994 * 125.34329 * 179.74150 * 23 22 21 25 25 N 1.28871 * 109.32431 * 359.72778 * 23 22 21 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 29 29 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99995 * 265.00643 * 12 2 1 31 31 H 1.07997 * 119.44924 * 180.02562 * 15 14 13 32 32 H 1.08002 * 120.80922 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.8076 -1.1188 4.0077 10 1 1.8280 -0.4191 5.2204 11 1 1.8282 -2.5197 4.0082 12 7 2.0184 -0.6907 -1.1962 13 6 2.1509 0.0019 -2.3921 14 7 1.8353 1.2857 -2.4465 15 6 1.9466 1.9816 -3.5621 16 6 2.4012 1.3940 -4.7280 17 35 2.5524 2.4132 -6.3136 18 6 2.7453 0.0507 -4.7247 19 6 2.6236 -0.6621 -3.5320 20 6 2.9835 -2.1001 -3.4726 21 7 2.9153 -2.8990 -2.3979 22 7 3.3118 -4.0700 -2.7657 23 7 3.6302 -4.0313 -4.0124 24 1 3.9623 -4.7812 -4.5302 25 7 3.4383 -2.8400 -4.4647 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7082 1.1609 3.4843 30 1 2.2490 -1.6319 -1.1526 31 1 1.6789 3.0278 -3.5642 32 1 3.1032 -0.4308 -5.6228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603443544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:47 Heat of formation + Delta-G solvation = 170.719422 kcal Electronic energy + Delta-G solvation = -20683.350522 eV Core-core repulsion = 17342.637294 eV Total energy + Delta-G solvation = -3340.713228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.38744 -39.99100 -36.00388 -34.49809 -33.77951 -33.07612 -31.86037 -30.90580 -29.43637 -27.38234 -25.28879 -25.12577 -24.33733 -22.63969 -21.69573 -20.30680 -19.25761 -17.61454 -17.08284 -16.47910 -15.94519 -15.89693 -14.79635 -14.44335 -14.25657 -14.02836 -13.37323 -13.07137 -12.54003 -12.28419 -12.07741 -11.98126 -11.47806 -11.36218 -11.15380 -11.09153 -11.00338 -10.87299 -10.66640 -10.35675 -10.22323 -10.16486 -9.37032 -9.28713 -9.14406 -8.94822 -8.44784 -7.05406 -6.10446 -4.18519 0.81849 1.24902 1.52701 1.82573 2.26687 2.45682 3.29429 3.33528 3.36264 3.66839 4.04142 4.08670 4.25280 4.39846 4.82321 4.96259 5.16980 5.22367 5.38913 5.59471 5.73416 5.97040 6.02675 6.39218 6.52596 6.82632 7.01607 7.12756 7.41936 7.69182 7.75976 7.93348 8.14683 8.19729 8.29529 8.72934 8.96625 9.47513 10.95493 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.004038 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.234441 B = 6931.711746 C = 8889.701510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.058 0.942 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.662 5.662 13 C 0.458 3.542 14 N -0.522 5.522 15 C 0.219 3.781 16 C -0.243 4.243 17 Br -0.058 7.058 18 C 0.045 3.955 19 C -0.172 4.172 20 C 0.250 3.750 21 N -0.280 5.280 22 N -0.042 5.042 23 N -0.230 5.230 24 H 0.473 0.527 25 N -0.307 5.307 26 H 0.025 0.975 27 H 0.092 0.908 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.417 0.583 31 H 0.163 0.837 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -2.046 -18.806 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.075 0.925 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.288 5.288 13 C 0.212 3.788 14 N -0.239 5.239 15 C 0.051 3.949 16 C -0.328 4.328 17 Br 0.026 6.974 18 C 0.016 3.984 19 C -0.186 4.186 20 C -0.029 4.029 21 N -0.154 5.154 22 N -0.037 5.037 23 N -0.076 5.076 24 H 0.327 0.673 25 N -0.159 5.159 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.262 0.738 31 H 0.180 0.820 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.656 -1.797 -17.802 18.262 hybrid contribution 0.817 -1.545 -0.121 1.752 sum 4.473 -3.343 -17.923 18.772 Atomic orbital electron populations 1.22089 0.98122 0.99189 1.01029 1.18963 0.91245 0.94198 0.79548 0.92472 1.21184 1.32507 1.13319 0.90189 0.92005 1.24835 0.94767 0.94940 0.98900 1.69882 1.35857 1.22440 1.23969 0.86509 0.79215 0.79703 0.81721 1.20184 1.21129 1.20094 1.46562 1.61473 1.13925 1.06805 1.18635 0.85914 0.88075 0.86205 1.67727 1.23430 1.05715 1.27077 1.22689 0.87546 0.99300 0.85326 1.22099 1.20379 0.95946 0.94425 1.96587 1.97925 1.71129 1.31796 1.21068 0.89724 0.91342 0.96266 1.17346 1.18355 0.87471 0.95446 1.23315 0.98416 0.95964 0.85208 1.75597 1.18959 0.96166 1.24665 1.78897 1.11660 1.17050 0.96099 1.47639 1.42387 1.09718 1.07869 0.67281 1.74894 1.22153 0.92579 1.26312 0.95597 0.88917 0.96447 0.92547 0.73816 0.81979 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.27 37.16 0.34 -3.22 16 2 C 0.26 6.60 2.57 -69.08 -0.18 6.42 16 3 H 0.06 1.58 7.54 -51.93 -0.39 1.19 16 4 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.85 5.30 -17.81 -0.09 1.76 16 7 N -0.88 -24.54 11.32 55.43 0.63 -23.91 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.66 -14.61 5.15 -54.85 -0.28 -14.89 16 13 C 0.46 9.01 7.47 -154.87 -1.16 7.85 16 14 N -0.52 -10.01 9.19 -12.19 -0.11 -10.12 16 15 C 0.22 3.34 10.92 -17.50 -0.19 3.15 16 16 C -0.24 -3.36 6.24 -39.42 -0.25 -3.61 16 17 Br -0.06 -0.66 33.73 -68.01 -2.29 -2.95 16 18 C 0.05 0.64 9.58 -38.96 -0.37 0.27 16 19 C -0.17 -2.91 5.91 -104.56 -0.62 -3.52 16 20 C 0.25 4.06 7.91 -156.29 -1.24 2.82 16 21 N -0.28 -4.86 9.49 32.14 0.30 -4.56 16 22 N -0.04 -0.59 13.47 60.35 0.81 0.22 16 23 N -0.23 -2.41 7.90 60.35 0.48 -1.94 16 24 H 0.47 2.37 8.96 -340.37 -3.05 -0.69 16 25 N -0.31 -4.03 12.15 32.16 0.39 -3.64 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.42 9.04 5.09 -40.82 -0.21 8.83 16 31 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.14 1.74 7.96 -52.49 -0.42 1.32 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -29.96 303.16 -9.77 -39.73 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.19 Total: 4.36 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -4.05 Total: -2.80 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 2.22 Total: -58.84 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.29 Total: -2.95 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.96 -9.77 -39.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603443544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.444 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds