Wall clock time and date at job start Tue Mar 31 2020 20:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46892 * 111.00327 * 2 1 4 4 C 1.50699 * 109.47427 * 293.95530 * 3 2 1 5 5 H 1.07999 * 119.99630 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00267 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99671 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00109 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47245 * 90.00011 * 8 6 4 10 10 H 1.48501 * 109.47052 * 209.99917 * 8 6 4 11 11 H 1.48496 * 109.46851 * 329.99723 * 8 6 4 12 12 C 1.38833 * 111.00052 * 123.96025 * 2 1 3 13 13 N 1.32326 * 119.77429 * 291.86807 * 12 2 1 14 14 C 1.31951 * 121.75700 * 179.75485 * 13 12 2 15 15 C 1.38251 * 121.10153 * 0.52305 * 14 13 12 16 16 Br 1.89104 * 120.28747 * 179.76772 * 15 14 13 17 17 C 1.38670 * 119.42710 * 359.74379 * 15 14 13 18 18 C 1.39463 * 118.39038 * 0.02562 * 17 15 14 19 19 C 1.48364 * 120.56271 * 180.02562 * 18 17 15 20 20 N 1.34075 * 126.68096 * 185.17927 * 19 18 17 21 21 N 1.28981 * 107.26820 * 179.89358 * 20 19 18 22 22 N 1.28729 * 108.95320 * 0.37875 * 21 20 19 23 23 H 0.96997 * 125.33759 * 179.79661 * 22 21 20 24 24 N 1.28870 * 109.32568 * 359.75650 * 22 21 20 25 25 H 1.09001 * 109.47182 * 65.31368 * 1 2 3 26 26 H 1.09000 * 109.47666 * 185.32127 * 1 2 3 27 27 H 1.09006 * 109.46792 * 305.32040 * 1 2 3 28 28 H 1.09006 * 109.47435 * 173.95210 * 3 2 1 29 29 H 1.09001 * 109.47457 * 53.95877 * 3 2 1 30 30 H 0.97001 * 119.99837 * 180.02562 * 7 6 4 31 31 H 1.07996 * 119.45503 * 180.28863 * 14 13 12 32 32 H 1.08003 * 120.80739 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0269 3.3495 -1.5284 7 7 2.7121 4.0018 -0.6148 8 14 1.5819 4.1873 -3.1376 9 1 0.2696 4.8674 -2.9952 10 1 2.6240 5.1888 -3.4789 11 1 1.4986 3.1718 -4.2178 12 6 1.9665 -0.7240 1.0750 13 7 1.8026 -0.2683 2.3065 14 6 2.2552 -0.9266 3.3566 15 6 2.9333 -2.1227 3.2119 16 35 3.5777 -3.0438 4.7326 17 6 3.1363 -2.6414 1.9420 18 6 2.6444 -1.9294 0.8484 19 6 2.8339 -2.4403 -0.5316 20 7 2.5008 -1.8151 -1.6699 21 7 2.8319 -2.5922 -2.6446 22 7 3.3460 -3.6700 -2.1638 23 1 3.6738 -4.4175 -2.6879 24 7 3.3576 -3.5999 -0.8771 25 1 -0.3633 0.4292 -0.9338 26 1 -0.3634 -1.0232 0.0953 27 1 -0.3633 0.5942 0.8386 28 1 3.0798 1.3443 0.1083 29 1 1.5613 1.9273 0.8309 30 1 2.9862 4.9181 -0.7765 31 1 2.0966 -0.5226 4.3455 32 1 3.6634 -3.5738 1.8031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604735757.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:17 Heat of formation + Delta-G solvation = 187.596565 kcal Electronic energy + Delta-G solvation = -20887.828144 eV Core-core repulsion = 17547.846765 eV Total energy + Delta-G solvation = -3339.981380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.11955 -40.36568 -36.42976 -34.28248 -33.64413 -32.82873 -32.12944 -30.99674 -29.05184 -27.19776 -25.31722 -25.07037 -24.08842 -22.84980 -21.70479 -20.66355 -19.03291 -16.94572 -16.83051 -16.58681 -16.14741 -15.82364 -14.89914 -14.29134 -14.13983 -13.77937 -13.34484 -13.13696 -13.03156 -12.52115 -11.95733 -11.78811 -11.39230 -11.28687 -11.07470 -10.94925 -10.89698 -10.74596 -10.71125 -10.54268 -10.48218 -9.96605 -9.59821 -9.44124 -9.17293 -8.50140 -8.39682 -7.56868 -5.96462 -3.96796 0.61982 1.01090 1.44148 1.47911 2.45456 2.61300 3.37578 3.43476 3.49246 3.74161 3.84623 4.20038 4.47205 4.55865 4.64690 4.75132 5.09443 5.35045 5.41106 5.63989 5.71431 5.83804 5.84395 6.01762 6.32232 6.34313 6.59951 6.69504 7.23211 7.36267 7.81681 7.94666 7.98276 8.14618 8.52401 8.53980 9.09896 9.65953 11.14721 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.004101 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.689129 B = 6826.256564 C = 8385.714212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.480 5.480 3 C 0.205 3.795 4 C -0.500 4.500 5 H 0.069 0.931 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.271 1.271 12 C 0.376 3.624 13 N -0.495 5.495 14 C 0.164 3.836 15 C -0.171 4.171 16 Br -0.040 7.040 17 C -0.008 4.008 18 C -0.050 4.050 19 C 0.227 3.773 20 N -0.190 5.190 21 N -0.063 5.063 22 N -0.240 5.240 23 H 0.469 0.531 24 N -0.307 5.307 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.025 0.975 29 H 0.011 0.989 30 H 0.260 0.740 31 H 0.164 0.836 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -18.780 7.881 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.204 5.204 3 C 0.082 3.918 4 C -0.539 4.539 5 H 0.087 0.913 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.196 1.196 12 C 0.145 3.855 13 N -0.207 5.207 14 C 0.002 3.998 15 C -0.252 4.252 16 Br 0.044 6.956 17 C -0.037 4.037 18 C -0.059 4.059 19 C -0.053 4.053 20 N -0.063 5.063 21 N -0.059 5.059 22 N -0.084 5.084 23 H 0.323 0.677 24 N -0.160 5.160 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.181 0.819 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.716 -18.304 7.444 19.834 hybrid contribution 0.309 -0.127 -0.400 0.521 sum 2.025 -18.431 7.043 19.835 Atomic orbital electron populations 1.22148 0.85605 0.99170 1.02602 1.60535 1.08541 1.19736 1.31550 1.19792 0.95153 0.79100 0.97747 1.21096 1.34786 0.96635 1.01350 0.91330 1.24955 0.95347 0.97299 0.96938 1.69974 1.38448 1.11386 1.34086 0.86493 0.77879 0.79188 0.83865 1.20778 1.21430 1.19610 1.20620 0.88014 0.88769 0.88076 1.68403 1.20182 1.32811 0.99323 1.22864 0.89772 0.88652 0.98549 1.22651 1.09223 1.00316 0.93038 1.96687 1.87062 1.75878 1.35965 1.21422 0.94243 0.98708 0.89364 1.17915 1.04244 0.96441 0.87259 1.23008 0.99306 0.87888 0.95096 1.76748 1.15054 1.19897 0.94563 1.79131 1.10353 0.92597 1.23810 1.47711 1.40629 1.16918 1.03123 0.67748 1.74806 1.23176 1.21955 0.96090 0.89631 0.94072 0.94986 0.95661 0.97092 0.92998 0.81854 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.02 9.19 60.06 0.55 1.57 16 2 N -0.48 -10.54 2.97 -182.18 -0.54 -11.08 16 3 C 0.21 5.41 4.40 -4.98 -0.02 5.39 16 4 C -0.50 -14.02 8.58 -34.44 -0.30 -14.32 16 5 H 0.07 1.90 7.10 -52.49 -0.37 1.53 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.38 7.33 5.26 -154.87 -0.82 6.52 16 13 N -0.50 -9.18 9.80 -12.19 -0.12 -9.30 16 14 C 0.16 2.39 10.92 -17.50 -0.19 2.19 16 15 C -0.17 -2.24 6.24 -39.42 -0.25 -2.48 16 16 Br -0.04 -0.42 33.73 -68.01 -2.29 -2.72 16 17 C -0.01 -0.11 9.58 -38.97 -0.37 -0.48 16 18 C -0.05 -0.86 5.91 -104.56 -0.62 -1.47 16 19 C 0.23 3.89 7.90 -156.29 -1.23 2.66 16 20 N -0.19 -3.65 10.99 32.14 0.35 -3.30 16 21 N -0.06 -1.00 13.47 60.35 0.81 -0.19 16 22 N -0.24 -2.80 7.90 60.35 0.48 -2.32 16 23 H 0.47 2.89 8.96 -340.37 -3.05 -0.16 16 24 N -0.31 -4.26 12.17 32.16 0.39 -3.87 16 25 H 0.09 1.74 7.02 -51.93 -0.36 1.37 16 26 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 27 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 28 H 0.03 0.73 8.06 -51.93 -0.42 0.32 16 29 H 0.01 0.32 7.98 -51.93 -0.41 -0.10 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.15 1.76 7.97 -52.48 -0.42 1.34 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -32.79 308.19 -9.33 -42.13 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -5.43 Total: -5.68 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -3.34 Total: 1.06 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 2.11 Total: -56.29 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.79 -9.33 -42.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604735757.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.724 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds