Wall clock time and date at job start Tue Mar 31 2020 20:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46892 * 111.00327 * 2 1 4 4 C 1.50699 * 109.47427 * 293.95530 * 3 2 1 5 5 H 1.07999 * 119.99630 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00267 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99671 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00109 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47245 * 90.00011 * 8 6 4 10 10 H 1.48501 * 109.47052 * 209.99917 * 8 6 4 11 11 H 1.48496 * 109.46851 * 329.99723 * 8 6 4 12 12 C 1.38833 * 111.00052 * 123.96025 * 2 1 3 13 13 N 1.32326 * 119.77429 * 291.86807 * 12 2 1 14 14 C 1.31951 * 121.75700 * 179.75485 * 13 12 2 15 15 C 1.38251 * 121.10153 * 0.52305 * 14 13 12 16 16 Br 1.89104 * 120.28747 * 179.76772 * 15 14 13 17 17 C 1.38670 * 119.42710 * 359.74379 * 15 14 13 18 18 C 1.39463 * 118.39038 * 0.02562 * 17 15 14 19 19 C 1.48364 * 120.56271 * 180.02562 * 18 17 15 20 20 N 1.34075 * 126.68096 * 185.17927 * 19 18 17 21 21 N 1.28981 * 107.26820 * 179.89358 * 20 19 18 22 22 N 1.28729 * 108.95320 * 0.37875 * 21 20 19 23 23 H 0.96997 * 125.33759 * 179.79661 * 22 21 20 24 24 N 1.28870 * 109.32568 * 359.75650 * 22 21 20 25 25 H 1.09001 * 109.47182 * 65.31368 * 1 2 3 26 26 H 1.09000 * 109.47666 * 185.32127 * 1 2 3 27 27 H 1.09006 * 109.46792 * 305.32040 * 1 2 3 28 28 H 1.09006 * 109.47435 * 173.95210 * 3 2 1 29 29 H 1.09001 * 109.47457 * 53.95877 * 3 2 1 30 30 H 0.97001 * 119.99837 * 180.02562 * 7 6 4 31 31 H 1.07996 * 119.45503 * 180.28863 * 14 13 12 32 32 H 1.08003 * 120.80739 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0269 3.3495 -1.5284 7 7 2.7121 4.0018 -0.6148 8 14 1.5819 4.1873 -3.1376 9 1 0.2696 4.8674 -2.9952 10 1 2.6240 5.1888 -3.4789 11 1 1.4986 3.1718 -4.2178 12 6 1.9665 -0.7240 1.0750 13 7 1.8026 -0.2683 2.3065 14 6 2.2552 -0.9266 3.3566 15 6 2.9333 -2.1227 3.2119 16 35 3.5777 -3.0438 4.7326 17 6 3.1363 -2.6414 1.9420 18 6 2.6444 -1.9294 0.8484 19 6 2.8339 -2.4403 -0.5316 20 7 2.5008 -1.8151 -1.6699 21 7 2.8319 -2.5922 -2.6446 22 7 3.3460 -3.6700 -2.1638 23 1 3.6738 -4.4175 -2.6879 24 7 3.3576 -3.5999 -0.8771 25 1 -0.3633 0.4292 -0.9338 26 1 -0.3634 -1.0232 0.0953 27 1 -0.3633 0.5942 0.8386 28 1 3.0798 1.3443 0.1083 29 1 1.5613 1.9273 0.8309 30 1 2.9862 4.9181 -0.7765 31 1 2.0966 -0.5226 4.3455 32 1 3.6634 -3.5738 1.8031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604735757.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:17 Heat of formation + Delta-G solvation = 164.916667 kcal Electronic energy + Delta-G solvation = -20888.811618 eV Core-core repulsion = 17547.846765 eV Total energy + Delta-G solvation = -3340.964854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.019 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.30918 -41.67547 -38.02001 -35.50664 -34.88365 -34.72076 -33.55750 -32.17554 -30.36069 -29.14489 -26.93876 -26.25280 -25.43088 -24.48616 -22.99853 -22.23703 -20.17648 -18.65132 -18.05362 -17.96903 -17.72281 -17.16483 -16.70602 -15.86672 -15.63348 -15.04307 -14.89216 -14.67473 -14.34853 -14.02982 -13.68253 -13.19743 -12.96561 -12.84710 -12.64382 -12.45518 -12.42886 -12.24724 -12.10962 -11.95278 -11.93734 -11.56300 -11.34226 -10.77832 -10.58603 -10.56895 -9.72953 -9.30025 -8.15552 -6.24010 -0.61314 -0.18335 0.29483 0.37507 1.33889 1.44158 1.45923 1.52005 1.58134 2.42111 2.48903 2.64935 2.84226 3.18201 3.25980 3.43891 3.62807 3.88307 4.02121 4.38300 4.42246 4.57370 4.62622 4.65746 4.75636 4.99675 5.09875 5.23110 5.25998 5.71727 5.74865 6.06404 6.10389 6.63403 6.69245 6.90288 7.32194 7.44014 8.96323 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.004101 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.689129 B = 6826.256564 C = 8385.714212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.481 5.481 3 C 0.232 3.768 4 C -0.511 4.511 5 H 0.068 0.932 6 C 0.002 3.998 7 N -0.937 5.937 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.341 3.659 13 N -0.527 5.527 14 C 0.159 3.841 15 C -0.158 4.158 16 Br -0.003 7.003 17 C 0.004 3.996 18 C -0.056 4.056 19 C 0.211 3.789 20 N -0.242 5.242 21 N -0.074 5.074 22 N -0.202 5.202 23 H 0.493 0.507 24 N -0.286 5.286 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.023 0.977 28 H -0.013 1.013 29 H -0.021 1.021 30 H 0.263 0.737 31 H 0.190 0.810 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -20.956 8.020 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.204 5.204 3 C 0.107 3.893 4 C -0.549 4.549 5 H 0.086 0.914 6 C -0.195 4.195 7 N -0.577 5.577 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.110 3.890 13 N -0.239 5.239 14 C -0.002 4.002 15 C -0.240 4.240 16 Br 0.082 6.918 17 C -0.025 4.025 18 C -0.064 4.064 19 C -0.070 4.070 20 N -0.113 5.113 21 N -0.069 5.069 22 N -0.052 5.052 23 H 0.352 0.648 24 N -0.140 5.140 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.006 0.994 29 H -0.003 1.003 30 H 0.072 0.928 31 H 0.207 0.793 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.119 -20.522 7.573 21.977 hybrid contribution 0.279 0.321 -0.290 0.514 sum 2.397 -20.201 7.282 21.607 Atomic orbital electron populations 1.22080 0.84886 1.00360 1.01528 1.60298 1.09323 1.16871 1.33871 1.19215 0.92554 0.81588 0.95916 1.21374 1.34585 0.97102 1.01874 0.91407 1.25867 0.95085 0.98005 1.00550 1.70111 1.39603 1.11790 1.36244 0.85396 0.77923 0.78034 0.79366 1.19614 1.21019 1.18910 1.20523 0.90451 0.90068 0.87915 1.68241 1.21540 1.34244 0.99877 1.23283 0.89420 0.89056 0.98469 1.22810 1.07349 0.99627 0.94189 1.96741 1.86465 1.74856 1.33766 1.21684 0.93251 0.99027 0.88579 1.17967 1.04083 0.96016 0.88350 1.23071 1.00341 0.88684 0.94876 1.76716 1.17083 1.21746 0.95742 1.79047 1.11129 0.93416 1.23325 1.47774 1.38108 1.16568 1.02756 0.64841 1.74765 1.22156 1.20425 0.96667 0.90729 0.91647 0.95880 0.99448 1.00334 0.92837 0.79300 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.38 9.19 127.69 1.17 3.55 16 2 N -0.48 -22.03 2.97 -730.29 -2.17 -24.20 16 3 C 0.23 12.95 4.40 85.56 0.38 13.33 16 4 C -0.51 -29.70 8.58 25.60 0.22 -29.48 16 5 H 0.07 3.87 7.10 -2.91 -0.02 3.85 16 6 C 0.00 0.15 5.46 84.65 0.46 0.61 16 7 N -0.94 -57.95 13.29 21.45 0.28 -57.67 16 8 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 12 C 0.34 13.65 5.26 133.39 0.70 14.35 16 13 N -0.53 -19.98 9.80 -192.49 -1.89 -21.86 16 14 C 0.16 4.51 10.92 84.68 0.92 5.43 16 15 C -0.16 -3.82 6.24 22.38 0.14 -3.68 16 16 Br 0.00 -0.05 33.73 -20.37 -0.69 -0.73 16 17 C 0.00 0.10 9.58 22.67 0.22 0.32 16 18 C -0.06 -1.89 5.91 -19.83 -0.12 -2.01 16 19 C 0.21 7.08 7.90 137.33 1.08 8.16 16 20 N -0.24 -9.33 10.99 -52.22 -0.57 -9.90 16 21 N -0.07 -2.28 13.47 37.02 0.50 -1.78 16 22 N -0.20 -4.29 7.90 37.02 0.29 -3.99 16 23 H 0.49 4.66 8.96 -347.54 -3.12 1.54 16 24 N -0.29 -7.32 12.17 -52.17 -0.63 -7.95 16 25 H 0.07 3.15 7.02 -2.39 -0.02 3.13 16 26 H 0.06 2.31 8.06 -2.39 -0.02 2.29 16 27 H 0.02 0.95 8.07 -2.38 -0.02 0.94 16 28 H -0.01 -0.78 8.06 -2.38 -0.02 -0.80 16 29 H -0.02 -1.28 7.98 -2.39 -0.02 -1.30 16 30 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.18 3.54 7.97 -2.91 -0.02 3.51 16 Total: -1.00 -73.82 308.19 0.41 -73.41 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: -1.93 Total: -3.44 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 5.18 Total: 10.58 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -4.19 Total: -127.36 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.69 Total: -0.73 kcal Total: -73.82 0.41 -73.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604735757.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.324 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds