Wall clock time and date at job start Tue Mar 31 2020 20:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99272 * 2 1 4 4 H 1.48500 * 109.47045 * 275.00936 * 3 2 1 5 5 H 1.48492 * 109.47229 * 35.01238 * 3 2 1 6 6 H 1.48502 * 109.46878 * 155.01248 * 3 2 1 7 7 C 1.38978 * 120.00828 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99847 * 270.40514 * 7 2 1 9 9 N 1.36954 * 119.99969 * 90.38969 * 7 2 1 10 10 C 1.46500 * 119.99915 * 175.83596 * 9 7 2 11 11 C 1.53006 * 109.47168 * 263.12979 * 10 9 7 12 12 C 1.50702 * 109.46805 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00318 * 359.97438 * 12 11 10 14 14 O 1.34230 * 119.99315 * 180.02562 * 12 11 10 15 15 C 1.34773 * 119.99898 * 355.84469 * 9 7 2 16 16 O 1.21661 * 120.00383 * 3.32321 * 15 9 7 17 17 C 1.47175 * 119.99668 * 183.33526 * 15 9 7 18 18 C 1.35299 * 123.15062 * 173.87367 * 17 15 9 19 19 S 1.70944 * 108.82062 * 180.26377 * 18 17 15 20 20 C 1.70764 * 91.13654 * 359.97438 * 19 18 17 21 21 C 1.50706 * 124.71057 * 180.02562 * 20 19 18 22 22 F 1.39904 * 109.46814 * 274.92653 * 21 20 19 23 23 F 1.39890 * 109.47270 * 34.92954 * 21 20 19 24 24 F 1.39898 * 109.46927 * 154.93530 * 21 20 19 25 25 N 1.28648 * 110.57860 * 359.97438 * 20 19 18 26 26 H 0.96990 * 120.00563 * 4.92056 * 1 2 3 27 27 H 1.08999 * 109.47078 * 23.12705 * 10 9 7 28 28 H 1.08998 * 109.46877 * 143.13048 * 10 9 7 29 29 H 1.08999 * 109.46898 * 299.99837 * 11 10 9 30 30 H 1.09000 * 109.46719 * 59.99981 * 11 10 9 31 31 H 0.96706 * 116.99484 * 179.97438 * 14 12 11 32 32 H 1.07995 * 125.59440 * 0.23866 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.3895 2.1077 -1.3947 5 1 1.5023 2.6198 0.8032 6 1 3.5945 1.4122 0.5914 7 6 2.0092 -1.2035 -0.0005 8 1 2.2735 -1.6748 0.9345 9 7 2.3587 -1.7919 -1.1868 10 6 3.1697 -3.0119 -1.1884 11 6 4.6399 -2.6468 -1.4034 12 6 5.4740 -3.9019 -1.4056 13 8 4.9468 -4.9780 -1.2507 14 8 6.8028 -3.8242 -1.5787 15 6 1.9566 -1.2484 -2.3528 16 8 1.3349 -0.2027 -2.3542 17 6 2.2694 -1.9203 -3.6243 18 6 1.7967 -1.4984 -4.8198 19 16 2.3781 -2.5425 -6.0422 20 6 3.2182 -3.4805 -4.8888 21 6 4.0502 -4.6949 -5.2118 22 9 3.2248 -5.8229 -5.2727 23 9 4.6821 -4.5123 -6.4465 24 9 5.0158 -4.8769 -4.2160 25 7 3.0432 -3.0060 -3.7059 26 1 -0.4850 0.8368 -0.0720 27 1 3.0584 -3.5234 -0.2323 28 1 2.8370 -3.6683 -1.9925 29 1 4.7511 -2.1353 -2.3595 30 1 4.9725 -1.9904 -0.5992 31 1 7.2958 -4.6561 -1.5723 32 1 1.1568 -0.6427 -4.9762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:42 Heat of formation + Delta-G solvation = -202.433202 kcal Electronic energy + Delta-G solvation = -28399.436148 eV Core-core repulsion = 23652.570958 eV Total energy + Delta-G solvation = -4746.865190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.34171 -48.87848 -48.81081 -41.75914 -41.01176 -39.46546 -37.14623 -36.37264 -34.89246 -32.44848 -31.96731 -28.70079 -27.82488 -26.14282 -24.85924 -22.91766 -21.98757 -21.18211 -20.62203 -19.74547 -19.20210 -19.19532 -18.88873 -18.15508 -17.65333 -16.99415 -16.82159 -16.69317 -16.20394 -15.81378 -15.71088 -15.62361 -15.24570 -15.21559 -14.97486 -14.94620 -14.91386 -14.52108 -14.34525 -14.17593 -13.97619 -13.72359 -13.25898 -13.02998 -12.92682 -12.55945 -12.46072 -12.23746 -12.00975 -11.57766 -10.97395 -10.94367 -10.77821 -10.32402 -10.10305 -9.72157 -8.99828 -5.49825 -0.80647 -0.11049 0.37370 0.82685 1.18688 1.29688 1.32233 1.51399 1.54248 2.01153 2.21448 2.28861 2.46659 2.81286 2.94267 3.11640 3.16909 3.49397 3.98067 4.04243 4.14484 4.21669 4.51683 4.59682 4.71109 4.84301 5.19872 5.25810 5.65475 5.84346 6.13195 6.59305 7.06631 7.12352 7.42136 7.99021 8.23428 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.005602 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.331251 B = 4997.201075 C = 6388.287605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.205 3.795 3 Si 0.876 3.124 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.522 4.522 8 H 0.102 0.898 9 N -0.377 5.377 10 C 0.120 3.880 11 C -0.110 4.110 12 C 0.501 3.499 13 O -0.536 6.536 14 O -0.511 6.511 15 C 0.414 3.586 16 O -0.618 6.618 17 C 0.030 3.970 18 C -0.242 4.242 19 S 0.388 5.612 20 C -0.137 4.137 21 C 0.562 3.438 22 F -0.164 7.164 23 F -0.154 7.154 24 F -0.164 7.164 25 N -0.411 5.411 26 H 0.289 0.711 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.425 0.575 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.947 -7.014 -12.758 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.030 4.030 3 Si 0.696 3.304 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.638 4.638 8 H 0.119 0.881 9 N -0.089 5.089 10 C -0.005 4.005 11 C -0.148 4.148 12 C 0.344 3.656 13 O -0.426 6.426 14 O -0.325 6.325 15 C 0.208 3.792 16 O -0.510 6.510 17 C -0.105 4.105 18 C -0.385 4.385 19 S 0.643 5.357 20 C -0.413 4.413 21 C 0.504 3.496 22 F -0.145 7.145 23 F -0.136 7.136 24 F -0.145 7.145 25 N -0.130 5.130 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.287 0.713 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 8.252 -6.899 -13.244 17.061 hybrid contribution 0.317 0.566 1.213 1.376 sum 8.569 -6.333 -12.030 16.071 Atomic orbital electron populations 1.70684 1.11753 1.32241 1.18736 1.25385 0.92392 1.01836 0.83425 0.87117 0.83227 0.82266 0.77746 1.21345 1.20293 1.18343 1.18538 1.49208 1.10848 0.85239 0.88085 1.43630 1.39408 1.21135 1.04702 1.21623 0.88758 0.86900 1.03200 1.21479 0.93758 0.94214 1.05382 1.23014 0.81151 0.90644 0.70781 1.90676 1.73599 1.31592 1.46706 1.84495 1.20341 1.43465 1.84170 1.16737 0.91056 0.89215 0.82158 1.90503 1.50309 1.26067 1.84169 1.20533 0.99752 0.93766 0.96403 1.26911 1.07494 1.07822 0.96245 1.82000 1.35328 1.13304 1.05107 1.27203 1.11169 1.05869 0.97056 1.16770 0.77422 0.80571 0.74796 1.93261 1.72094 1.53117 1.96062 1.93255 1.82613 1.95172 1.42521 1.93239 1.64283 1.95475 1.61531 1.67124 1.14416 1.09284 1.22180 0.89911 0.91556 0.87772 0.88339 0.87501 0.71335 0.78693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -39.21 13.52 21.67 0.29 -38.92 16 2 C 0.21 11.12 3.00 84.93 0.25 11.37 16 3 Si 0.88 42.14 28.29 68.60 1.94 44.09 16 4 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.52 -28.37 9.49 84.07 0.80 -27.57 16 8 H 0.10 5.45 7.99 -2.91 -0.02 5.43 16 9 N -0.38 -18.97 2.64 -639.51 -1.69 -20.66 16 10 C 0.12 5.06 4.25 86.38 0.37 5.43 16 11 C -0.11 -3.94 5.54 29.85 0.17 -3.77 16 12 C 0.50 15.98 7.54 71.24 0.54 16.52 16 13 O -0.54 -19.46 16.65 21.96 0.37 -19.10 16 14 O -0.51 -12.42 13.42 -51.41 -0.69 -13.11 16 15 C 0.41 20.95 7.52 86.59 0.65 21.60 16 16 O -0.62 -34.95 12.73 -4.23 -0.05 -35.00 16 17 C 0.03 1.22 6.34 40.55 0.26 1.48 16 18 C -0.24 -7.71 10.62 67.14 0.71 -7.00 16 19 S 0.39 8.46 22.65 -56.49 -1.28 7.18 16 20 C -0.14 -3.90 6.71 88.58 0.59 -3.31 16 21 C 0.56 14.35 3.54 71.24 0.25 14.60 16 22 F -0.16 -4.21 17.30 44.97 0.78 -3.43 16 23 F -0.15 -3.23 17.06 44.97 0.77 -2.46 16 24 F -0.16 -4.69 16.29 44.97 0.73 -3.95 16 25 N -0.41 -14.67 5.11 -180.84 -0.92 -15.60 16 26 H 0.29 14.59 8.31 -92.72 -0.77 13.82 16 27 H 0.07 2.85 7.90 -2.39 -0.02 2.83 16 28 H 0.10 4.46 5.23 -2.39 -0.01 4.45 16 29 H 0.10 3.59 6.88 -2.39 -0.02 3.57 16 30 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.43 6.20 9.10 -74.05 -0.67 5.53 16 32 H 0.20 6.03 8.04 -2.91 -0.02 6.00 16 Total: -1.00 -68.90 313.11 5.39 -63.50 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.56 Total: 8.10 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: 4.59 Total: 29.35 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -2.32 Total: -75.17 kcal Atomic # 8 Polarization: -66.83 SS G_CDS: -0.38 Total: -67.21 kcal Atomic # 9 Polarization: -12.12 SS G_CDS: 2.28 Total: -9.84 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.94 Total: 44.09 kcal Atomic # 16 Polarization: 8.46 SS G_CDS: -1.28 Total: 7.18 kcal Total: -68.90 5.39 -63.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.930 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds