Wall clock time and date at job start Tue Mar 31 2020 20:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48503 * 109.47276 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46914 * 300.00092 * 3 2 1 6 6 H 1.48498 * 109.46882 * 59.99817 * 3 2 1 7 7 C 1.39017 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99823 * 185.50594 * 7 2 1 9 9 N 1.36885 * 119.99864 * 5.78423 * 7 2 1 10 10 C 1.46505 * 120.00203 * 51.03018 * 9 7 2 11 11 C 1.52995 * 109.47062 * 95.15113 * 10 9 7 12 12 C 1.50696 * 109.47380 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99673 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00202 * 180.02562 * 12 11 10 15 15 C 1.34778 * 120.00059 * 231.03202 * 9 7 2 16 16 O 1.21727 * 120.00117 * 175.77393 * 15 9 7 17 17 C 1.46566 * 119.99789 * 355.77773 * 15 9 7 18 18 S 1.76217 * 126.18002 * 359.00048 * 17 15 9 19 19 C 1.70916 * 90.37373 * 179.97438 * 18 17 15 20 20 N 1.29376 * 110.60016 * 0.31821 * 19 18 17 21 21 C 1.30947 * 117.46103 * 359.74987 * 20 19 18 22 22 C 1.50698 * 123.03873 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47287 * 242.33067 * 22 21 20 24 24 F 1.39908 * 109.46892 * 2.32763 * 22 21 20 25 25 F 1.39896 * 109.47166 * 122.32501 * 22 21 20 26 26 H 0.96992 * 120.00450 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47116 * 215.15110 * 10 9 7 28 28 H 1.08996 * 109.46717 * 335.15028 * 10 9 7 29 29 H 1.09005 * 109.47228 * 300.00522 * 11 10 9 30 30 H 1.09004 * 109.47366 * 60.00045 * 11 10 9 31 31 H 0.96703 * 116.99959 * 179.97438 * 14 12 11 32 32 H 1.08009 * 124.70113 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.7079 1.3464 -0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8891 2.3964 1.2125 7 6 2.0090 -1.2039 -0.0005 8 1 3.0852 -1.2060 0.0892 9 7 1.3298 -2.3863 -0.1205 10 6 0.3632 -2.5689 -1.2062 11 6 1.0456 -3.2663 -2.3846 12 6 0.0515 -3.4537 -3.5016 13 8 -1.0863 -3.0693 -3.3685 14 8 0.4296 -4.0485 -4.6439 15 6 1.5504 -3.3825 0.7601 16 8 0.8919 -4.4045 0.7003 17 6 2.5830 -3.2352 1.7897 18 16 3.6424 -1.8442 2.0089 19 6 4.3889 -2.6089 3.3428 20 7 3.8676 -3.7749 3.5494 21 6 2.9027 -4.1552 2.7500 22 6 2.2078 -5.4864 2.8762 23 9 2.4235 -6.2370 1.7155 24 9 2.7200 -6.1769 3.9799 25 9 0.8350 -5.2811 3.0506 26 1 -0.4850 0.8399 -0.0004 27 1 -0.4677 -3.1802 -0.8538 28 1 -0.0112 -1.5967 -1.5266 29 1 1.8765 -2.6551 -2.7369 30 1 1.4200 -4.2386 -2.0642 31 1 -0.2433 -4.1466 -5.3314 32 1 5.1886 -2.1804 3.9288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:11 Heat of formation + Delta-G solvation = -225.890694 kcal Electronic energy + Delta-G solvation = -27907.433729 eV Core-core repulsion = 23159.551346 eV Total energy + Delta-G solvation = -4747.882383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.41842 -46.96946 -46.85874 -39.98360 -39.47677 -38.46141 -35.92166 -35.26485 -32.49430 -31.33794 -30.22737 -27.05412 -25.74951 -24.28268 -23.98754 -21.31175 -20.11801 -19.65189 -18.86263 -18.00779 -17.80504 -17.71069 -16.79678 -16.37163 -16.15657 -15.85123 -15.57352 -14.92831 -14.76186 -14.50744 -13.92872 -13.72817 -13.69597 -13.48420 -13.31131 -13.10509 -13.05478 -12.95192 -12.87332 -12.69898 -12.29097 -12.07754 -11.54737 -11.49766 -11.39408 -11.25625 -10.86248 -10.66830 -10.37490 -10.24834 -9.79833 -9.09671 -8.99906 -8.97810 -8.72627 -7.85263 -6.87996 -4.80002 0.63752 1.70778 2.19050 2.54830 2.71486 2.85095 2.91975 2.96526 3.27228 3.28617 3.65443 3.93442 4.14787 4.32730 4.50680 4.70996 5.07744 5.15610 5.41321 5.57521 5.61912 5.71111 5.91876 6.11912 6.14546 6.60718 6.71784 6.78892 7.05248 7.48729 7.75228 7.88746 8.18689 8.47719 8.90186 9.37212 10.10880 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.006127 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.266305 B = 4568.588827 C = 6661.418592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.066 3.934 3 Si 0.910 3.090 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.353 4.353 8 H 0.099 0.901 9 N -0.425 5.425 10 C 0.139 3.861 11 C -0.129 4.129 12 C 0.485 3.515 13 O -0.513 6.513 14 O -0.523 6.523 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.192 4.192 18 S 0.312 5.688 19 C -0.083 4.083 20 N -0.453 5.453 21 C -0.009 4.009 22 C 0.555 3.445 23 F -0.166 7.166 24 F -0.179 7.179 25 F -0.161 7.161 26 H 0.283 0.717 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.403 0.597 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 -0.085 -1.699 6.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.149 4.149 3 Si 0.733 3.267 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.487 4.487 8 H 0.115 0.885 9 N -0.143 5.143 10 C 0.015 3.985 11 C -0.168 4.168 12 C 0.327 3.673 13 O -0.401 6.401 14 O -0.335 6.335 15 C 0.324 3.676 16 O -0.449 6.449 17 C -0.319 4.319 18 S 0.576 5.424 19 C -0.375 4.375 20 N -0.165 5.165 21 C -0.151 4.151 22 C 0.498 3.502 23 F -0.148 7.148 24 F -0.160 7.160 25 F -0.143 7.143 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.261 0.739 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 6.483 0.368 -1.344 6.631 hybrid contribution -0.508 -0.118 -0.220 0.566 sum 5.974 0.251 -1.564 6.181 Atomic orbital electron populations 1.69821 1.06462 1.29383 1.39720 1.25703 0.95423 1.00345 0.93400 0.86097 0.80533 0.80882 0.79169 1.17856 1.19532 1.19427 1.19314 0.91038 0.83153 1.55211 0.88493 1.43134 1.37041 1.12150 1.21983 1.21142 0.90633 1.02359 0.84347 1.21863 0.97946 1.04513 0.92441 1.23628 0.88582 0.72897 0.82210 1.90718 1.21631 1.46945 1.80802 1.84579 1.47824 1.74125 1.26968 1.17227 0.83480 0.85967 0.80911 1.90791 1.50109 1.30407 1.73563 1.25976 1.04106 0.98779 1.03084 1.85115 1.22055 1.14905 1.20339 1.29370 1.05388 0.95235 1.07556 1.65740 1.08474 1.15866 1.26435 1.20314 1.00710 0.96909 0.97164 1.16971 0.76841 0.82759 0.73625 1.93199 1.94560 1.77689 1.49314 1.93157 1.87098 1.81297 1.54476 1.93233 1.31147 1.94915 1.94963 0.90611 0.90823 0.87273 0.87584 0.88035 0.73928 0.79105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.11 11.65 55.50 0.65 -18.46 16 2 C 0.07 1.40 5.17 -17.45 -0.09 1.31 16 3 Si 0.91 16.04 29.56 -169.99 -5.02 11.01 16 4 H -0.26 -4.16 7.11 56.52 0.40 -3.76 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.35 -7.47 7.02 -15.01 -0.11 -7.57 16 8 H 0.10 1.89 5.12 -30.03 -0.15 1.74 16 9 N -0.42 -9.48 2.44 -116.33 -0.28 -9.76 16 10 C 0.14 2.98 4.16 -4.04 -0.02 2.96 16 11 C -0.13 -2.26 6.10 -27.89 -0.17 -2.43 16 12 C 0.48 8.11 8.33 36.00 0.30 8.41 16 13 O -0.51 -10.15 16.74 -18.75 -0.31 -10.47 16 14 O -0.52 -6.81 13.42 -39.25 -0.53 -7.34 16 15 C 0.54 12.42 7.53 -12.90 -0.10 12.32 16 16 O -0.56 -14.09 12.78 5.16 0.07 -14.03 16 17 C -0.19 -4.02 6.32 -36.75 -0.23 -4.25 16 18 S 0.31 5.20 18.53 -107.50 -1.99 3.21 16 19 C -0.08 -1.28 12.21 51.73 0.63 -0.64 16 20 N -0.45 -8.56 10.10 -11.29 -0.11 -8.67 16 21 C -0.01 -0.19 6.23 -83.50 -0.52 -0.71 16 22 C 0.56 11.59 2.79 36.00 0.10 11.69 16 23 F -0.17 -3.51 16.00 2.25 0.04 -3.48 16 24 F -0.18 -3.48 17.01 2.25 0.04 -3.44 16 25 F -0.16 -3.57 15.59 2.25 0.04 -3.54 16 26 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 27 H 0.07 1.73 7.48 -51.93 -0.39 1.35 16 28 H 0.11 2.50 6.07 -51.93 -0.32 2.19 16 29 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.40 3.35 9.10 45.56 0.41 3.76 16 32 H 0.19 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 311.42 15.07 4.69 4.69 Total: -1.00 -28.79 311.42 -3.79 -32.58 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -0.85 Total: 6.61 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: -0.20 Total: 21.08 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.25 Total: -36.90 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.77 Total: -31.83 kcal Atomic # 9 Polarization: -10.56 SS G_CDS: 0.11 Total: -10.46 kcal Atomic # 14 Polarization: 16.04 SS G_CDS: -5.02 Total: 11.01 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.99 Total: 3.21 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.79 -3.79 -32.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.310 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds