Wall clock time and date at job start Tue Mar 31 2020 20:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86796 * 119.99819 * 2 1 4 4 H 1.48494 * 109.47194 * 269.99651 * 3 2 1 5 5 H 1.48508 * 109.47509 * 30.00018 * 3 2 1 6 6 H 1.48505 * 109.47145 * 149.99876 * 3 2 1 7 7 C 1.39933 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 197.87423 * 7 2 1 9 9 C 1.41402 * 120.00127 * 17.87437 * 7 2 1 10 10 C 1.40765 * 120.21750 * 204.40687 * 9 7 2 11 11 C 1.37627 * 119.85771 * 180.02562 * 10 9 7 12 12 C 1.38559 * 120.30392 * 359.72723 * 11 10 9 13 13 C 1.39121 * 120.44412 * 0.55003 * 12 11 10 14 14 O 1.35894 * 119.93597 * 179.72492 * 13 12 11 15 15 S 1.52206 * 113.99921 * 269.72649 * 14 13 12 16 16 O 1.42098 * 106.40364 * 321.45974 * 15 14 13 17 17 O 1.42099 * 106.40206 * 188.53828 * 15 14 13 18 18 C 1.76201 * 107.21811 * 74.99768 * 15 14 13 19 19 O 1.33619 * 125.80707 * 270.00326 * 18 15 14 20 20 C 1.34223 * 110.92314 * 179.97438 * 19 18 15 21 21 C 1.34158 * 109.14241 * 359.70685 * 20 19 18 22 22 C 1.36501 * 125.80458 * 89.99941 * 18 15 14 23 23 C 1.47222 * 127.20588 * 0.02562 * 22 18 15 24 24 O 1.21538 * 120.00009 * 0.02562 * 23 22 18 25 25 O 1.34771 * 120.00535 * 179.97438 * 23 22 18 26 26 C 1.38142 * 120.13407 * 359.44905 * 13 12 11 27 27 H 0.97005 * 119.99829 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.06873 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.84559 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.78245 * 180.29804 * 12 11 10 31 31 H 1.08005 * 125.42471 * 179.97438 * 20 19 18 32 32 H 1.08007 * 127.02245 * 180.30568 * 21 20 19 33 33 H 0.96695 * 117.00336 * 180.02562 * 25 23 22 34 34 H 1.07997 * 120.15477 * 180.25221 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6528 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2343 0.2876 9 6 1.3521 -2.4071 -0.3748 10 6 1.8260 -3.6499 0.0858 11 6 1.1823 -4.8087 -0.2845 12 6 0.0663 -4.7572 -1.1042 13 6 -0.4094 -3.5361 -1.5713 14 8 -1.5015 -3.4981 -2.3793 15 16 -1.1763 -3.5809 -3.8639 16 8 0.0041 -2.8144 -4.0595 17 8 -2.3914 -3.3269 -4.5555 18 6 -0.7464 -5.2540 -4.2112 19 8 0.4829 -5.7740 -4.1501 20 6 0.4689 -7.0766 -4.4737 21 6 -0.7900 -7.4472 -4.7523 22 6 -1.6126 -6.2393 -4.5883 23 6 -3.0669 -6.1194 -4.7834 24 8 -3.6179 -5.0509 -4.6052 25 8 -3.7871 -7.1943 -5.1606 26 6 0.2226 -2.3618 -1.2110 27 1 -0.4850 0.8401 -0.0004 28 1 2.6934 -3.6942 0.7278 29 1 1.5458 -5.7621 0.0693 30 1 -0.4352 -5.6713 -1.3857 31 1 1.3328 -7.7242 -4.5009 32 1 -1.1296 -8.4311 -5.0409 33 1 -4.7386 -7.0666 -5.2764 34 1 -0.1489 -1.4135 -1.5701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:21 Heat of formation + Delta-G solvation = -140.435440 kcal Electronic energy + Delta-G solvation = -27419.193498 eV Core-core repulsion = 23184.580722 eV Total energy + Delta-G solvation = -4234.612776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.76641 -40.10150 -39.93274 -36.98768 -36.85066 -36.04900 -35.58275 -33.78994 -33.25671 -30.41386 -29.92200 -29.11241 -25.62272 -25.15005 -22.53068 -22.23020 -21.62572 -21.11390 -19.51288 -18.97020 -18.00353 -17.91150 -17.36119 -16.79693 -16.37268 -16.27620 -15.43433 -15.41892 -15.31227 -14.93329 -14.58348 -14.37830 -13.89704 -13.14186 -13.11027 -12.93844 -12.73092 -12.41375 -12.27756 -11.91661 -11.75972 -11.63956 -11.57607 -11.43427 -11.25031 -11.18547 -10.85692 -10.55241 -10.44181 -10.19293 -10.13253 -9.81030 -9.42847 -9.35529 -7.78031 -7.72999 -6.97082 -4.59193 0.32792 0.61771 1.71248 2.34712 2.62084 2.66391 2.75402 2.88712 3.01366 3.02138 3.05384 3.09562 3.81999 3.86007 4.27475 4.33399 4.69092 4.79307 5.01627 5.28181 5.34857 5.40205 5.80430 5.91471 6.03858 6.11051 6.35526 6.51522 6.55981 6.75105 6.78895 7.01884 7.25014 7.43493 7.57029 7.73940 7.77846 7.95502 8.30643 8.60544 8.62990 9.97801 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.004103 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.943944 B = 6822.909628 C = 7503.549667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.447 4.447 8 H 0.089 0.911 9 C 0.116 3.884 10 C -0.213 4.213 11 C -0.072 4.072 12 C -0.252 4.252 13 C 0.060 3.940 14 O -0.641 6.641 15 S 2.674 3.326 16 O -0.928 6.928 17 O -0.886 6.886 18 C -0.489 4.489 19 O -0.096 6.096 20 C 0.002 3.998 21 C -0.190 4.190 22 C -0.119 4.119 23 C 0.520 3.480 24 O -0.443 6.443 25 O -0.510 6.510 26 C -0.120 4.120 27 H 0.288 0.712 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.221 0.779 32 H 0.172 0.828 33 H 0.417 0.583 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -12.234 -7.207 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.113 3.887 10 C -0.233 4.233 11 C -0.090 4.090 12 C -0.274 4.274 13 C 0.019 3.981 14 O -0.601 6.601 15 S 2.756 3.244 16 O -0.927 6.927 17 O -0.884 6.884 18 C -0.616 4.616 19 O 0.013 5.987 20 C -0.068 4.068 21 C -0.209 4.209 22 C -0.123 4.123 23 C 0.361 3.639 24 O -0.328 6.328 25 O -0.323 6.323 26 C -0.143 4.143 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.237 0.763 32 H 0.189 0.811 33 H 0.276 0.724 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.370 -11.085 -7.105 13.237 hybrid contribution -0.538 -0.392 -0.361 0.757 sum -1.908 -11.476 -7.466 13.823 Atomic orbital electron populations 1.69771 1.07840 1.30253 1.32887 1.26054 0.94856 1.02009 0.91877 0.86180 0.80364 0.79788 0.79756 1.18786 1.20058 1.18315 1.19677 0.98493 0.90791 1.38551 0.89314 1.17427 0.90091 0.92858 0.88314 1.21136 1.03857 0.92445 1.05877 1.20323 0.94501 0.97259 0.96952 1.20230 1.02648 0.94071 1.10410 1.18180 0.85529 0.96098 0.98306 1.85747 1.46199 1.90376 1.37813 1.03664 0.74312 0.71918 0.74483 1.93668 1.50237 1.64589 1.84218 1.93798 1.43087 1.80752 1.70769 1.37224 0.87260 1.23557 1.13559 1.84089 1.26905 1.23151 1.64525 1.24600 0.99995 0.83163 0.99057 1.23081 0.91922 0.99018 1.06892 1.20476 0.91493 0.94417 1.05913 1.19787 0.86775 0.81973 0.75415 1.91305 1.71224 1.26270 1.44003 1.84504 1.26855 1.39652 1.81325 1.21526 0.97819 0.95702 0.99226 0.90073 0.87718 0.87872 0.88441 0.76265 0.81102 0.72411 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.82 10.96 55.55 0.61 -19.21 16 2 C 0.07 1.74 5.14 -17.34 -0.09 1.65 16 3 Si 0.92 18.02 29.59 -169.99 -5.03 12.99 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 7 C -0.45 -11.24 9.05 -37.74 -0.34 -11.58 16 8 H 0.09 2.08 7.91 -52.49 -0.41 1.67 16 9 C 0.12 2.98 5.57 -106.84 -0.60 2.39 16 10 C -0.21 -4.82 9.79 -38.85 -0.38 -5.20 16 11 C -0.07 -1.49 10.02 -39.69 -0.40 -1.88 16 12 C -0.25 -5.47 9.35 -39.14 -0.37 -5.84 16 13 C 0.06 1.45 4.79 -39.29 -0.19 1.26 16 14 O -0.64 -14.68 10.15 -51.54 -0.52 -15.20 16 15 S 2.67 56.71 5.40 -107.50 -0.58 56.13 16 16 O -0.93 -21.63 16.33 -66.83 -1.09 -22.73 16 17 O -0.89 -19.58 13.92 -70.87 -0.99 -20.57 16 18 C -0.49 -8.75 6.58 30.11 0.20 -8.55 16 19 O -0.10 -1.54 10.52 7.71 0.08 -1.46 16 20 C 0.00 0.02 12.03 29.30 0.35 0.38 16 21 C -0.19 -2.19 11.05 -37.44 -0.41 -2.61 16 22 C -0.12 -1.86 6.31 -103.30 -0.65 -2.51 16 23 C 0.52 8.04 8.31 34.38 0.29 8.33 16 24 O -0.44 -8.43 13.50 -27.68 -0.37 -8.80 16 25 O -0.51 -5.47 13.34 -40.68 -0.54 -6.01 16 26 C -0.12 -3.16 7.83 -38.72 -0.30 -3.46 16 27 H 0.29 6.59 8.30 -40.82 -0.34 6.26 16 28 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 29 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 30 H 0.10 1.88 7.96 -52.49 -0.42 1.46 16 31 H 0.22 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.17 1.40 8.06 -52.48 -0.42 0.97 16 33 H 0.42 2.43 9.11 45.56 0.42 2.84 16 34 H 0.14 3.72 6.16 -52.49 -0.32 3.39 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -33.34 322.52 -8.04 -41.37 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -1.57 Total: 6.26 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.89 Total: -27.64 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.61 Total: -19.21 kcal Atomic # 8 Polarization: -71.32 SS G_CDS: -3.44 Total: -74.76 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 56.71 SS G_CDS: -0.58 Total: 56.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.34 -8.04 -41.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.063 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds