Wall clock time and date at job start Tue Mar 31 2020 20:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86796 * 119.99819 * 2 1 4 4 H 1.48494 * 109.47194 * 269.99651 * 3 2 1 5 5 H 1.48508 * 109.47509 * 30.00018 * 3 2 1 6 6 H 1.48505 * 109.47145 * 149.99876 * 3 2 1 7 7 C 1.39933 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 197.87423 * 7 2 1 9 9 C 1.41402 * 120.00127 * 17.87437 * 7 2 1 10 10 C 1.40765 * 120.21750 * 204.40687 * 9 7 2 11 11 C 1.37627 * 119.85771 * 180.02562 * 10 9 7 12 12 C 1.38559 * 120.30392 * 359.72723 * 11 10 9 13 13 C 1.39121 * 120.44412 * 0.55003 * 12 11 10 14 14 O 1.35894 * 119.93597 * 179.72492 * 13 12 11 15 15 S 1.52206 * 113.99921 * 269.72649 * 14 13 12 16 16 O 1.42098 * 106.40364 * 321.45974 * 15 14 13 17 17 O 1.42099 * 106.40206 * 188.53828 * 15 14 13 18 18 C 1.76201 * 107.21811 * 74.99768 * 15 14 13 19 19 O 1.33619 * 125.80707 * 270.00326 * 18 15 14 20 20 C 1.34223 * 110.92314 * 179.97438 * 19 18 15 21 21 C 1.34158 * 109.14241 * 359.70685 * 20 19 18 22 22 C 1.36501 * 125.80458 * 89.99941 * 18 15 14 23 23 C 1.47222 * 127.20588 * 0.02562 * 22 18 15 24 24 O 1.21538 * 120.00009 * 0.02562 * 23 22 18 25 25 O 1.34771 * 120.00535 * 179.97438 * 23 22 18 26 26 C 1.38142 * 120.13407 * 359.44905 * 13 12 11 27 27 H 0.97005 * 119.99829 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.06873 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.84559 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.78245 * 180.29804 * 12 11 10 31 31 H 1.08005 * 125.42471 * 179.97438 * 20 19 18 32 32 H 1.08007 * 127.02245 * 180.30568 * 21 20 19 33 33 H 0.96695 * 117.00336 * 180.02562 * 25 23 22 34 34 H 1.07997 * 120.15477 * 180.25221 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6528 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2343 0.2876 9 6 1.3521 -2.4071 -0.3748 10 6 1.8260 -3.6499 0.0858 11 6 1.1823 -4.8087 -0.2845 12 6 0.0663 -4.7572 -1.1042 13 6 -0.4094 -3.5361 -1.5713 14 8 -1.5015 -3.4981 -2.3793 15 16 -1.1763 -3.5809 -3.8639 16 8 0.0041 -2.8144 -4.0595 17 8 -2.3914 -3.3269 -4.5555 18 6 -0.7464 -5.2540 -4.2112 19 8 0.4829 -5.7740 -4.1501 20 6 0.4689 -7.0766 -4.4737 21 6 -0.7900 -7.4472 -4.7523 22 6 -1.6126 -6.2393 -4.5883 23 6 -3.0669 -6.1194 -4.7834 24 8 -3.6179 -5.0509 -4.6052 25 8 -3.7871 -7.1943 -5.1606 26 6 0.2226 -2.3618 -1.2110 27 1 -0.4850 0.8401 -0.0004 28 1 2.6934 -3.6942 0.7278 29 1 1.5458 -5.7621 0.0693 30 1 -0.4352 -5.6713 -1.3857 31 1 1.3328 -7.7242 -4.5009 32 1 -1.1296 -8.4311 -5.0409 33 1 -4.7386 -7.0666 -5.2764 34 1 -0.1489 -1.4135 -1.5701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:20 Heat of formation + Delta-G solvation = -164.867935 kcal Electronic energy + Delta-G solvation = -27420.252970 eV Core-core repulsion = 23184.580722 eV Total energy + Delta-G solvation = -4235.672249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.86601 -41.82753 -41.11679 -38.73095 -38.52674 -37.31527 -37.15068 -35.57897 -34.36144 -31.80881 -31.40939 -30.90105 -27.43301 -26.36004 -24.21595 -23.50143 -23.09102 -22.51008 -21.09866 -20.18778 -19.69584 -19.10343 -18.94224 -18.22580 -17.86943 -17.59795 -17.07835 -16.72173 -16.56590 -16.51483 -16.11187 -16.03917 -15.08777 -14.84646 -14.42382 -14.22455 -14.12277 -14.03215 -13.90567 -13.51155 -13.49325 -13.34629 -12.99998 -12.89049 -12.83140 -12.68360 -12.56535 -12.15587 -11.93131 -11.74719 -11.54803 -11.32581 -11.13492 -10.45621 -9.59753 -9.52874 -8.75430 -6.47725 -1.17208 -0.73132 0.59912 0.79737 0.88082 1.25076 1.38315 1.50081 1.53251 1.55340 1.69829 1.86635 2.17330 2.31031 2.56629 3.21268 3.28063 3.51260 3.79133 3.88628 4.17664 4.33271 4.35364 4.40939 4.60471 4.78250 4.95488 5.00625 5.08577 5.20800 5.40511 5.47079 5.54396 5.63209 5.77178 5.91760 6.15703 6.47337 6.77400 6.79536 6.80286 8.22340 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.004103 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.943944 B = 6822.909628 C = 7503.549667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.244 1.244 7 C -0.482 4.482 8 H 0.098 0.902 9 C 0.087 3.913 10 C -0.214 4.214 11 C -0.064 4.064 12 C -0.241 4.241 13 C 0.051 3.949 14 O -0.657 6.657 15 S 2.690 3.310 16 O -0.966 6.966 17 O -0.907 6.907 18 C -0.533 4.533 19 O -0.115 6.115 20 C 0.026 3.974 21 C -0.180 4.180 22 C -0.118 4.118 23 C 0.523 3.477 24 O -0.490 6.490 25 O -0.488 6.488 26 C -0.165 4.165 27 H 0.292 0.708 28 H 0.127 0.873 29 H 0.155 0.845 30 H 0.127 0.873 31 H 0.278 0.722 32 H 0.213 0.787 33 H 0.439 0.561 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -16.141 -7.418 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.167 1.167 7 C -0.510 4.510 8 H 0.116 0.884 9 C 0.084 3.916 10 C -0.234 4.234 11 C -0.082 4.082 12 C -0.263 4.263 13 C 0.011 3.989 14 O -0.618 6.618 15 S 2.778 3.222 16 O -0.965 6.965 17 O -0.905 6.905 18 C -0.665 4.665 19 O -0.007 6.007 20 C -0.043 4.043 21 C -0.198 4.198 22 C -0.123 4.123 23 C 0.364 3.636 24 O -0.379 6.379 25 O -0.303 6.303 26 C -0.188 4.188 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.173 0.827 30 H 0.145 0.855 31 H 0.293 0.707 32 H 0.230 0.770 33 H 0.302 0.698 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.027 -14.960 -7.296 16.644 hybrid contribution -1.031 0.401 -0.426 1.186 sum -1.058 -14.559 -7.721 16.514 Atomic orbital electron populations 1.69858 1.09508 1.31223 1.34380 1.26974 0.95472 1.05385 0.90910 0.85147 0.79515 0.75332 0.79507 1.19193 1.19202 1.16731 1.20006 0.99103 0.91705 1.40203 0.88404 1.17835 0.90390 0.94629 0.88768 1.21500 1.04361 0.92039 1.05503 1.20853 0.93273 0.98732 0.95384 1.20665 1.02579 0.93941 1.09103 1.18432 0.85447 0.96603 0.98456 1.85683 1.46324 1.91052 1.38712 1.02492 0.73377 0.72809 0.73495 1.93618 1.51129 1.67248 1.84465 1.93771 1.43757 1.82305 1.70682 1.35925 0.89106 1.22563 1.18894 1.84067 1.25972 1.25595 1.65114 1.25854 1.01878 0.81250 0.95339 1.23579 0.91065 0.99034 1.06156 1.20866 0.91696 0.95618 1.04074 1.19921 0.87109 0.82038 0.74500 1.91296 1.72126 1.28270 1.46163 1.84449 1.28623 1.37212 1.79998 1.21411 1.00058 0.95532 1.01792 0.89748 0.85459 0.82739 0.85527 0.70683 0.77046 0.69787 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.47 10.96 21.82 0.24 -44.23 16 2 C 0.03 1.43 5.14 85.25 0.44 1.87 16 3 Si 0.99 38.13 29.59 68.60 2.03 40.16 16 4 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 6 H -0.24 -8.76 7.11 99.48 0.71 -8.05 16 7 C -0.48 -25.19 9.05 23.46 0.21 -24.98 16 8 H 0.10 4.70 7.91 -2.91 -0.02 4.67 16 9 C 0.09 4.60 5.57 -21.30 -0.12 4.48 16 10 C -0.21 -9.49 9.79 22.74 0.22 -9.27 16 11 C -0.06 -2.48 10.02 22.20 0.22 -2.26 16 12 C -0.24 -10.15 9.35 22.56 0.21 -9.94 16 13 C 0.05 2.56 4.79 22.46 0.11 2.67 16 14 O -0.66 -31.78 10.15 -61.63 -0.63 -32.41 16 15 S 2.69 120.11 5.40 -56.49 -0.30 119.80 16 16 O -0.97 -48.23 16.33 -118.76 -1.94 -50.16 16 17 O -0.91 -42.54 13.92 -114.90 -1.60 -44.14 16 18 C -0.53 -18.69 6.58 67.41 0.44 -18.25 16 19 O -0.12 -3.43 10.52 4.69 0.05 -3.38 16 20 C 0.03 0.45 12.03 66.89 0.80 1.25 16 21 C -0.18 -3.22 11.05 23.65 0.26 -2.96 16 22 C -0.12 -3.43 6.31 -19.01 -0.12 -3.55 16 23 C 0.52 15.42 8.31 70.18 0.58 16.00 16 24 O -0.49 -18.92 13.50 27.73 0.37 -18.55 16 25 O -0.49 -8.93 13.34 -56.82 -0.76 -9.69 16 26 C -0.17 -9.24 7.83 22.83 0.18 -9.06 16 27 H 0.29 14.30 8.30 -92.70 -0.77 13.53 16 28 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 29 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 30 H 0.13 4.51 7.96 -2.91 -0.02 4.49 16 31 H 0.28 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.44 3.87 9.11 -74.06 -0.67 3.19 16 34 H 0.11 6.36 6.16 -2.91 -0.02 6.34 16 Total: -1.00 -80.31 322.52 1.43 -78.88 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.52 Total: 17.70 kcal Atomic # 6 Polarization: -57.43 SS G_CDS: 3.45 Total: -53.98 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.24 Total: -44.23 kcal Atomic # 8 Polarization: -153.84 SS G_CDS: -4.50 Total: -158.33 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Atomic # 16 Polarization: 120.11 SS G_CDS: -0.30 Total: 119.80 kcal Total: -80.31 1.43 -78.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.988 kcal (2) G-P(sol) polarization free energy of solvation -80.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds