Wall clock time and date at job start Tue Mar 31 2020 21:06:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30879 * 1
3 3 Si 1.86799 * 119.99997 * 2 1
4 4 H 1.48499 * 109.47287 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.46896 * 300.00269 * 3 2 1
6 6 H 1.48501 * 109.46845 * 59.99898 * 3 2 1
7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99548 * 197.79672 * 7 2 1
9 9 C 1.41217 * 119.99935 * 17.78648 * 7 2 1
10 10 C 1.40831 * 120.17754 * 24.71470 * 9 7 2
11 11 C 1.36444 * 119.80941 * 180.22537 * 10 9 7
12 12 C 1.39311 * 120.18284 * 359.50037 * 11 10 9
13 13 O 1.35672 * 119.81787 * 180.27547 * 12 11 10
14 14 S 1.52205 * 113.99872 * 89.99507 * 13 12 11
15 15 O 1.42102 * 106.40300 * 188.54012 * 14 13 12
16 16 O 1.42097 * 106.40144 * 321.46393 * 14 13 12
17 17 C 1.76197 * 107.21847 * 75.00288 * 14 13 12
18 18 C 1.39640 * 126.06275 * 269.72034 * 17 14 13
19 19 C 1.38483 * 105.35788 * 179.85039 * 18 17 14
20 20 C 1.47011 * 126.89192 * 180.10168 * 19 18 17
21 21 O 1.21551 * 120.00073 * 0.32862 * 20 19 18
22 22 O 1.34811 * 119.99636 * 180.32927 * 20 19 18
23 23 N 1.36646 * 106.21033 * 0.39413 * 19 18 17
24 24 H 0.97005 * 125.19712 * 179.77245 * 23 19 18
25 25 N 1.28444 * 109.60987 * 359.74345 * 23 19 18
26 26 C 1.39318 * 120.36502 * 0.24918 * 12 11 10
27 27 C 1.36435 * 120.18514 * 0.02562 * 26 12 11
28 28 H 0.97001 * 120.00430 * 0.02562 * 1 2 3
29 29 H 1.07996 * 120.09733 * 0.02562 * 10 9 7
30 30 H 1.07997 * 119.90369 * 179.76915 * 11 10 9
31 31 H 1.08000 * 127.31914 * 359.97438 * 18 17 14
32 32 H 0.96705 * 117.00232 * 179.97438 * 22 20 19
33 33 H 1.07993 * 119.90212 * 180.02562 * 26 12 11
34 34 H 1.07999 * 120.09330 * 180.02562 * 27 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3088 0.0000 0.0000
3 14 2.2428 1.6177 0.0000
4 1 3.7028 1.3464 -0.0006
5 1 1.8839 2.3964 -1.2125
6 1 1.8840 2.3964 1.2125
7 6 2.0083 -1.2115 -0.0005
8 1 3.0496 -1.2339 0.2853
9 6 1.3529 -2.4051 -0.3747
10 6 0.2240 -2.3592 -1.2155
11 6 -0.4062 -3.5167 -1.5685
12 6 0.0701 -4.7422 -1.1081
13 8 -0.5590 -5.8890 -1.4682
14 16 -0.0240 -6.5124 -2.7496
15 8 -0.9118 -7.5711 -3.0819
16 8 0.2646 -5.4349 -3.6299
17 6 1.5213 -7.2631 -2.3588
18 6 2.7741 -6.6503 -2.4292
19 6 3.6792 -7.6189 -2.0289
20 6 5.1387 -7.4746 -1.9267
21 8 5.6655 -6.4150 -2.2042
22 8 5.8926 -8.5176 -1.5252
23 7 2.9443 -8.7377 -1.7544
24 1 3.3073 -9.5852 -1.4528
25 7 1.6991 -8.4957 -1.9563
26 6 1.1893 -4.7966 -0.2802
27 6 1.8278 -3.6480 0.0867
28 1 -0.4851 0.8400 -0.0004
29 1 -0.1436 -1.4104 -1.5773
30 1 -1.2742 -3.4831 -2.2103
31 1 2.9908 -5.6359 -2.7298
32 1 6.8477 -8.3749 -1.4737
33 1 1.5525 -5.7507 0.0721
34 1 2.6955 -3.6920 0.7282
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001608189740.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:06:16
Heat of formation + Delta-G solvation = -102.895008 kcal
Electronic energy + Delta-G solvation = -26706.103085 eV
Core-core repulsion = 22505.410936 eV
Total energy + Delta-G solvation = -4200.692150 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 338.050 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.91706 -40.18675 -39.85179 -37.03123 -36.66147 -36.50862 -35.41295 -33.81341
-32.31473 -31.43818 -29.96577 -29.55970 -25.53452 -25.02037 -23.46128 -21.95086
-21.48749 -21.35453 -19.74006 -19.39349 -18.03779 -17.77055 -17.63394 -16.98587
-16.75866 -16.37562 -15.76380 -15.54326 -15.29291 -14.62849 -14.33132 -14.17760
-13.92028 -13.80924 -13.06445 -12.51291 -12.36471 -12.16177 -12.12404 -12.02723
-11.83211 -11.59652 -11.51246 -11.45991 -11.30223 -11.20676 -11.03278 -10.98892
-10.67910 -10.22512 -10.10872 -9.67157 -9.57178 -9.41503 -7.92310 -7.69190
-7.15898 -4.71750 0.67887 0.78262 1.66624 2.22742 2.37487 2.55868
2.68734 2.79066 2.90421 2.94400 2.97494 3.25953 3.67483 4.06667
4.18089 4.24345 4.55867 5.01675 5.18734 5.24411 5.35402 5.84169
5.93757 5.96985 5.98548 6.15796 6.47153 6.64845 6.68777 6.82217
6.90449 7.22074 7.27264 7.45656 7.46860 7.66945 7.68095 7.86451
8.23934 8.46763 8.55676 9.76136
Molecular weight = 338.05amu
Principal moments of inertia in cm(-1)
A = 0.012037 B = 0.004199 C = 0.003296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2325.611469 B = 6666.358113 C = 8494.215137
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.764 5.764
2 C 0.071 3.929
3 Si 0.917 3.083
4 H -0.256 1.256
5 H -0.267 1.267
6 H -0.271 1.271
7 C -0.426 4.426
8 H 0.090 0.910
9 C 0.122 3.878
10 C -0.159 4.159
11 C -0.057 4.057
12 C -0.108 4.108
13 O -0.625 6.625
14 S 2.671 3.329
15 O -0.948 6.948
16 O -0.946 6.946
17 C -0.540 4.540
18 C -0.038 4.038
19 C -0.045 4.045
20 C 0.561 3.439
21 O -0.483 6.483
22 O -0.519 6.519
23 N -0.345 5.345
24 H 0.455 0.545
25 N -0.148 5.148
26 C -0.070 4.070
27 C -0.212 4.212
28 H 0.290 0.710
29 H 0.130 0.870
30 H 0.105 0.895
31 H 0.190 0.810
32 H 0.423 0.577
33 H 0.098 0.902
34 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.151 -9.983 -0.910 12.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.387 5.387
2 C -0.151 4.151
3 Si 0.740 3.260
4 H -0.179 1.179
5 H -0.192 1.192
6 H -0.196 1.196
7 C -0.454 4.454
8 H 0.108 0.892
9 C 0.118 3.882
10 C -0.179 4.179
11 C -0.077 4.077
12 C -0.154 4.154
13 O -0.584 6.584
14 S 2.759 3.241
15 O -0.946 6.946
16 O -0.944 6.944
17 C -0.771 4.771
18 C -0.066 4.066
19 C -0.169 4.169
20 C 0.402 3.598
21 O -0.368 6.368
22 O -0.332 6.332
23 N -0.068 5.068
24 H 0.301 0.699
25 N 0.011 4.989
26 C -0.091 4.091
27 C -0.232 4.232
28 H 0.101 0.899
29 H 0.147 0.853
30 H 0.123 0.877
31 H 0.207 0.793
32 H 0.283 0.717
33 H 0.116 0.884
34 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 6.480 -10.541 -1.094 12.422
hybrid contribution 2.242 0.493 0.295 2.314
sum 8.722 -10.048 -0.800 13.329
Atomic orbital electron populations
1.69828 1.07887 1.30424 1.30579 1.26130 0.94905 1.02176 0.91899
0.86104 0.81047 0.79869 0.79010 1.17950 1.19174 1.19596 1.19900
0.98507 0.91072 1.35918 0.89239 1.17821 0.90665 0.92234 0.87520
1.20963 0.99087 0.96751 1.01135 1.20473 0.98366 0.91197 0.97711
1.17591 1.02117 0.80124 1.15537 1.85721 1.66172 1.45618 1.60931
1.04154 0.71712 0.73453 0.74749 1.93534 1.61228 1.57559 1.82278
1.93598 1.84467 1.51523 1.64765 1.35614 1.22797 0.99745 1.18933
1.22133 0.88296 1.00316 0.95843 1.20582 0.90079 0.90618 1.15630
1.19150 0.85317 0.81455 0.73862 1.91026 1.72638 1.27831 1.45280
1.84504 1.26176 1.41888 1.80643 1.44135 1.03954 1.12901 1.45812
0.69864 1.73317 0.98805 1.16567 1.10187 1.20322 0.94040 0.98123
0.96646 1.20573 1.03749 0.91948 1.06953 0.89913 0.85256 0.87651
0.79308 0.71694 0.88402 0.87558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -17.47 10.96 55.55 0.61 -16.86 16
2 C 0.07 1.57 5.14 -17.34 -0.09 1.48 16
3 Si 0.92 16.45 29.59 -169.99 -5.03 11.42 16
4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16
5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16
6 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16
7 C -0.43 -9.91 9.04 -37.83 -0.34 -10.25 16
8 H 0.09 1.97 7.91 -52.48 -0.41 1.55 16
9 C 0.12 2.91 5.57 -106.81 -0.60 2.32 16
10 C -0.16 -3.81 8.64 -39.25 -0.34 -4.15 16
11 C -0.06 -1.30 9.12 -39.83 -0.36 -1.66 16
12 C -0.11 -2.37 4.82 -38.78 -0.19 -2.56 16
13 O -0.63 -12.89 10.14 -50.85 -0.52 -13.40 16
14 S 2.67 51.81 5.59 -107.50 -0.60 51.21 16
15 O -0.95 -19.85 18.01 -66.81 -1.20 -21.05 16
16 O -0.95 -19.85 16.18 -66.81 -1.08 -20.93 16
17 C -0.54 -9.16 6.45 -17.44 -0.11 -9.27 16
18 C -0.04 -0.60 9.92 -38.97 -0.39 -0.99 16
19 C -0.05 -0.59 7.21 -82.08 -0.59 -1.18 16
20 C 0.56 6.45 8.32 34.29 0.29 6.73 16
21 O -0.48 -7.09 17.71 -19.30 -0.34 -7.43 16
22 O -0.52 -3.64 13.44 -40.80 -0.55 -4.19 16
23 N -0.35 -3.99 6.94 33.47 0.23 -3.76 16
24 H 0.45 3.27 8.96 -190.45 -1.71 1.57 16
25 N -0.15 -2.25 12.14 31.23 0.38 -1.87 16
26 C -0.07 -1.47 8.60 -39.83 -0.34 -1.81 16
27 C -0.21 -4.63 9.74 -39.25 -0.38 -5.01 16
28 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16
29 H 0.13 3.12 6.17 -52.49 -0.32 2.80 16
30 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16
31 H 0.19 2.99 8.06 -52.49 -0.42 2.57 16
32 H 0.42 1.05 9.11 45.56 0.42 1.47 16
33 H 0.10 1.81 7.93 -52.49 -0.42 1.39 16
34 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16
LS Contribution 327.15 15.07 4.93 4.93
Total: -1.00 -31.30 327.15 -9.47 -40.76
By element:
Atomic # 1 Polarization: 10.36 SS G_CDS: -2.85 Total: 7.51 kcal
Atomic # 6 Polarization: -22.91 SS G_CDS: -3.45 Total: -26.36 kcal
Atomic # 7 Polarization: -23.70 SS G_CDS: 1.22 Total: -22.48 kcal
Atomic # 8 Polarization: -63.31 SS G_CDS: -3.69 Total: -67.00 kcal
Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal
Atomic # 16 Polarization: 51.81 SS G_CDS: -0.60 Total: 51.21 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -31.30 -9.47 -40.76 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001608189740.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.132 kcal
(2) G-P(sol) polarization free energy of solvation -31.296 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.428 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds