Wall clock time and date at job start Tue Mar 31 2020 21:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48499 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46896 * 300.00269 * 3 2 1 6 6 H 1.48501 * 109.46845 * 59.99898 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99548 * 197.79672 * 7 2 1 9 9 C 1.41217 * 119.99935 * 17.78648 * 7 2 1 10 10 C 1.40831 * 120.17754 * 24.71470 * 9 7 2 11 11 C 1.36444 * 119.80941 * 180.22537 * 10 9 7 12 12 C 1.39311 * 120.18284 * 359.50037 * 11 10 9 13 13 O 1.35672 * 119.81787 * 180.27547 * 12 11 10 14 14 S 1.52205 * 113.99872 * 89.99507 * 13 12 11 15 15 O 1.42102 * 106.40300 * 188.54012 * 14 13 12 16 16 O 1.42097 * 106.40144 * 321.46393 * 14 13 12 17 17 C 1.76197 * 107.21847 * 75.00288 * 14 13 12 18 18 C 1.39640 * 126.06275 * 269.72034 * 17 14 13 19 19 C 1.38483 * 105.35788 * 179.85039 * 18 17 14 20 20 C 1.47011 * 126.89192 * 180.10168 * 19 18 17 21 21 O 1.21551 * 120.00073 * 0.32862 * 20 19 18 22 22 O 1.34811 * 119.99636 * 180.32927 * 20 19 18 23 23 N 1.36646 * 106.21033 * 0.39413 * 19 18 17 24 24 H 0.97005 * 125.19712 * 179.77245 * 23 19 18 25 25 N 1.28444 * 109.60987 * 359.74345 * 23 19 18 26 26 C 1.39318 * 120.36502 * 0.24918 * 12 11 10 27 27 C 1.36435 * 120.18514 * 0.02562 * 26 12 11 28 28 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.09733 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.90369 * 179.76915 * 11 10 9 31 31 H 1.08000 * 127.31914 * 359.97438 * 18 17 14 32 32 H 0.96705 * 117.00232 * 179.97438 * 22 20 19 33 33 H 1.07993 * 119.90212 * 180.02562 * 26 12 11 34 34 H 1.07999 * 120.09330 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2853 9 6 1.3529 -2.4051 -0.3747 10 6 0.2240 -2.3592 -1.2155 11 6 -0.4062 -3.5167 -1.5685 12 6 0.0701 -4.7422 -1.1081 13 8 -0.5590 -5.8890 -1.4682 14 16 -0.0240 -6.5124 -2.7496 15 8 -0.9118 -7.5711 -3.0819 16 8 0.2646 -5.4349 -3.6299 17 6 1.5213 -7.2631 -2.3588 18 6 2.7741 -6.6503 -2.4292 19 6 3.6792 -7.6189 -2.0289 20 6 5.1387 -7.4746 -1.9267 21 8 5.6655 -6.4150 -2.2042 22 8 5.8926 -8.5176 -1.5252 23 7 2.9443 -8.7377 -1.7544 24 1 3.3073 -9.5852 -1.4528 25 7 1.6991 -8.4957 -1.9563 26 6 1.1893 -4.7966 -0.2802 27 6 1.8278 -3.6480 0.0867 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1436 -1.4104 -1.5773 30 1 -1.2742 -3.4831 -2.2103 31 1 2.9908 -5.6359 -2.7298 32 1 6.8477 -8.3749 -1.4737 33 1 1.5525 -5.7507 0.0721 34 1 2.6955 -3.6920 0.7282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:16 Heat of formation + Delta-G solvation = -102.895008 kcal Electronic energy + Delta-G solvation = -26706.103085 eV Core-core repulsion = 22505.410936 eV Total energy + Delta-G solvation = -4200.692150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.91706 -40.18675 -39.85179 -37.03123 -36.66147 -36.50862 -35.41295 -33.81341 -32.31473 -31.43818 -29.96577 -29.55970 -25.53452 -25.02037 -23.46128 -21.95086 -21.48749 -21.35453 -19.74006 -19.39349 -18.03779 -17.77055 -17.63394 -16.98587 -16.75866 -16.37562 -15.76380 -15.54326 -15.29291 -14.62849 -14.33132 -14.17760 -13.92028 -13.80924 -13.06445 -12.51291 -12.36471 -12.16177 -12.12404 -12.02723 -11.83211 -11.59652 -11.51246 -11.45991 -11.30223 -11.20676 -11.03278 -10.98892 -10.67910 -10.22512 -10.10872 -9.67157 -9.57178 -9.41503 -7.92310 -7.69190 -7.15898 -4.71750 0.67887 0.78262 1.66624 2.22742 2.37487 2.55868 2.68734 2.79066 2.90421 2.94400 2.97494 3.25953 3.67483 4.06667 4.18089 4.24345 4.55867 5.01675 5.18734 5.24411 5.35402 5.84169 5.93757 5.96985 5.98548 6.15796 6.47153 6.64845 6.68777 6.82217 6.90449 7.22074 7.27264 7.45656 7.46860 7.66945 7.68095 7.86451 8.23934 8.46763 8.55676 9.76136 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.004199 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.611469 B = 6666.358113 C = 8494.215137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.426 4.426 8 H 0.090 0.910 9 C 0.122 3.878 10 C -0.159 4.159 11 C -0.057 4.057 12 C -0.108 4.108 13 O -0.625 6.625 14 S 2.671 3.329 15 O -0.948 6.948 16 O -0.946 6.946 17 C -0.540 4.540 18 C -0.038 4.038 19 C -0.045 4.045 20 C 0.561 3.439 21 O -0.483 6.483 22 O -0.519 6.519 23 N -0.345 5.345 24 H 0.455 0.545 25 N -0.148 5.148 26 C -0.070 4.070 27 C -0.212 4.212 28 H 0.290 0.710 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.190 0.810 32 H 0.423 0.577 33 H 0.098 0.902 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.151 -9.983 -0.910 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.454 4.454 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.179 4.179 11 C -0.077 4.077 12 C -0.154 4.154 13 O -0.584 6.584 14 S 2.759 3.241 15 O -0.946 6.946 16 O -0.944 6.944 17 C -0.771 4.771 18 C -0.066 4.066 19 C -0.169 4.169 20 C 0.402 3.598 21 O -0.368 6.368 22 O -0.332 6.332 23 N -0.068 5.068 24 H 0.301 0.699 25 N 0.011 4.989 26 C -0.091 4.091 27 C -0.232 4.232 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.123 0.877 31 H 0.207 0.793 32 H 0.283 0.717 33 H 0.116 0.884 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.480 -10.541 -1.094 12.422 hybrid contribution 2.242 0.493 0.295 2.314 sum 8.722 -10.048 -0.800 13.329 Atomic orbital electron populations 1.69828 1.07887 1.30424 1.30579 1.26130 0.94905 1.02176 0.91899 0.86104 0.81047 0.79869 0.79010 1.17950 1.19174 1.19596 1.19900 0.98507 0.91072 1.35918 0.89239 1.17821 0.90665 0.92234 0.87520 1.20963 0.99087 0.96751 1.01135 1.20473 0.98366 0.91197 0.97711 1.17591 1.02117 0.80124 1.15537 1.85721 1.66172 1.45618 1.60931 1.04154 0.71712 0.73453 0.74749 1.93534 1.61228 1.57559 1.82278 1.93598 1.84467 1.51523 1.64765 1.35614 1.22797 0.99745 1.18933 1.22133 0.88296 1.00316 0.95843 1.20582 0.90079 0.90618 1.15630 1.19150 0.85317 0.81455 0.73862 1.91026 1.72638 1.27831 1.45280 1.84504 1.26176 1.41888 1.80643 1.44135 1.03954 1.12901 1.45812 0.69864 1.73317 0.98805 1.16567 1.10187 1.20322 0.94040 0.98123 0.96646 1.20573 1.03749 0.91948 1.06953 0.89913 0.85256 0.87651 0.79308 0.71694 0.88402 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.47 10.96 55.55 0.61 -16.86 16 2 C 0.07 1.57 5.14 -17.34 -0.09 1.48 16 3 Si 0.92 16.45 29.59 -169.99 -5.03 11.42 16 4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 6 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.43 -9.91 9.04 -37.83 -0.34 -10.25 16 8 H 0.09 1.97 7.91 -52.48 -0.41 1.55 16 9 C 0.12 2.91 5.57 -106.81 -0.60 2.32 16 10 C -0.16 -3.81 8.64 -39.25 -0.34 -4.15 16 11 C -0.06 -1.30 9.12 -39.83 -0.36 -1.66 16 12 C -0.11 -2.37 4.82 -38.78 -0.19 -2.56 16 13 O -0.63 -12.89 10.14 -50.85 -0.52 -13.40 16 14 S 2.67 51.81 5.59 -107.50 -0.60 51.21 16 15 O -0.95 -19.85 18.01 -66.81 -1.20 -21.05 16 16 O -0.95 -19.85 16.18 -66.81 -1.08 -20.93 16 17 C -0.54 -9.16 6.45 -17.44 -0.11 -9.27 16 18 C -0.04 -0.60 9.92 -38.97 -0.39 -0.99 16 19 C -0.05 -0.59 7.21 -82.08 -0.59 -1.18 16 20 C 0.56 6.45 8.32 34.29 0.29 6.73 16 21 O -0.48 -7.09 17.71 -19.30 -0.34 -7.43 16 22 O -0.52 -3.64 13.44 -40.80 -0.55 -4.19 16 23 N -0.35 -3.99 6.94 33.47 0.23 -3.76 16 24 H 0.45 3.27 8.96 -190.45 -1.71 1.57 16 25 N -0.15 -2.25 12.14 31.23 0.38 -1.87 16 26 C -0.07 -1.47 8.60 -39.83 -0.34 -1.81 16 27 C -0.21 -4.63 9.74 -39.25 -0.38 -5.01 16 28 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 29 H 0.13 3.12 6.17 -52.49 -0.32 2.80 16 30 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.19 2.99 8.06 -52.49 -0.42 2.57 16 32 H 0.42 1.05 9.11 45.56 0.42 1.47 16 33 H 0.10 1.81 7.93 -52.49 -0.42 1.39 16 34 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -31.30 327.15 -9.47 -40.76 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -2.85 Total: 7.51 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -3.45 Total: -26.36 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 1.22 Total: -22.48 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: -3.69 Total: -67.00 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.60 Total: 51.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.30 -9.47 -40.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.132 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds