Wall clock time and date at job start Tue Mar 31 2020 21:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99745 * 2 1 4 4 H 1.48505 * 109.46777 * 239.99594 * 3 2 1 5 5 H 1.48501 * 109.47337 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47252 * 119.99608 * 3 2 1 7 7 C 1.39930 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00147 * 197.87580 * 7 2 1 9 9 C 1.41404 * 120.00327 * 17.86991 * 7 2 1 10 10 C 1.40761 * 120.22134 * 204.40830 * 9 7 2 11 11 C 1.37629 * 119.85855 * 180.02562 * 10 9 7 12 12 C 1.38571 * 120.30265 * 359.72771 * 11 10 9 13 13 C 1.39109 * 120.44126 * 0.54807 * 12 11 10 14 14 O 1.35906 * 119.93082 * 179.72387 * 13 12 11 15 15 S 1.52194 * 114.00180 * 269.72693 * 14 13 12 16 16 O 1.42102 * 106.40275 * 321.45929 * 15 14 13 17 17 O 1.42097 * 106.40381 * 188.54057 * 15 14 13 18 18 C 1.76205 * 107.21759 * 74.99815 * 15 14 13 19 19 N 1.30427 * 125.99652 * 269.97965 * 18 15 14 20 20 N 1.39928 * 108.91928 * 180.02562 * 19 18 15 21 21 H 0.97002 * 125.73832 * 179.97438 * 20 19 18 22 22 C 1.34219 * 108.51290 * 359.73096 * 20 19 18 23 23 C 1.38124 * 107.40865 * 0.42278 * 22 20 19 24 24 C 1.47290 * 126.42880 * 179.83797 * 23 22 20 25 25 O 1.21525 * 120.00319 * 179.69418 * 24 23 22 26 26 O 1.34763 * 119.99818 * 359.69452 * 24 23 22 27 27 C 1.38138 * 120.13626 * 359.45178 * 13 12 11 28 28 H 0.96995 * 120.00130 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.07303 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.84738 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.77437 * 180.29915 * 12 11 10 32 32 H 1.08004 * 126.29921 * 180.27072 * 22 20 19 33 33 H 0.96692 * 116.99640 * 180.02562 * 26 24 23 34 34 H 1.08010 * 120.15217 * 180.25002 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2876 9 6 1.3521 -2.4071 -0.3747 10 6 1.8261 -3.6499 0.0859 11 6 1.1824 -4.8087 -0.2844 12 6 0.0663 -4.7572 -1.1041 13 6 -0.4094 -3.5362 -1.5711 14 8 -1.5015 -3.4983 -2.3791 15 16 -1.1765 -3.5810 -3.8636 16 8 0.0039 -2.8145 -4.0593 17 8 -2.3916 -3.3271 -4.5552 18 6 -0.7465 -5.2541 -4.2109 19 7 0.4519 -5.7655 -4.1530 20 7 0.3846 -7.1197 -4.4986 21 1 1.1351 -7.7331 -4.5353 22 6 -0.8941 -7.4284 -4.7656 23 6 -1.6399 -6.2774 -4.6017 24 6 -3.0942 -6.1430 -4.7922 25 8 -3.6344 -5.0698 -4.6097 26 8 -3.8258 -7.2102 -5.1690 27 6 0.2226 -2.3620 -1.2108 28 1 -0.4850 0.8400 -0.0004 29 1 2.6935 -3.6942 0.7278 30 1 1.5459 -5.7621 0.0695 31 1 -0.4351 -5.6714 -1.3854 32 1 -1.2703 -8.3977 -5.0575 33 1 -4.7763 -7.0730 -5.2817 34 1 -0.1489 -1.4135 -1.5701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:11 Heat of formation + Delta-G solvation = -87.844895 kcal Electronic energy + Delta-G solvation = -27335.131422 eV Core-core repulsion = 23135.091895 eV Total energy + Delta-G solvation = -4200.039528 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69307 -39.93891 -39.59911 -36.86137 -36.65257 -35.86443 -35.37371 -33.72490 -32.29877 -30.94026 -29.87364 -29.02277 -25.53480 -24.29359 -23.49128 -22.27603 -21.37987 -21.07906 -19.33951 -18.61032 -17.86797 -17.73698 -17.23531 -16.79471 -16.23831 -16.08720 -15.78753 -15.25834 -14.93807 -14.68418 -14.49634 -14.30088 -13.83894 -13.12704 -13.06483 -12.68096 -12.25126 -12.17126 -11.79632 -11.69052 -11.61543 -11.42874 -11.38741 -11.17111 -11.13491 -11.11023 -10.81866 -10.53102 -10.47175 -10.23175 -10.06866 -9.73909 -9.29418 -9.26564 -7.69488 -7.65121 -6.90625 -4.52650 0.68592 1.09436 1.30826 2.30332 2.51626 2.73603 2.94699 3.04844 3.06956 3.08693 3.14708 3.22466 3.86665 3.99987 4.12467 4.40452 4.54519 4.79819 5.18240 5.43357 5.44173 5.64160 5.90822 6.11162 6.19311 6.53351 6.57954 6.65866 6.82375 6.86246 6.88452 7.08373 7.33290 7.51152 7.64191 7.80611 7.98989 8.02882 8.37242 8.67785 8.69533 10.04328 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.004064 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.965131 B = 6887.474730 C = 7569.224670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.087 0.913 9 C 0.117 3.883 10 C -0.214 4.214 11 C -0.073 4.073 12 C -0.246 4.246 13 C 0.064 3.936 14 O -0.646 6.646 15 S 2.683 3.317 16 O -0.934 6.934 17 O -0.895 6.895 18 C -0.434 4.434 19 N -0.151 5.151 20 N -0.448 5.448 21 H 0.450 0.550 22 C 0.125 3.875 23 C -0.210 4.210 24 C 0.527 3.473 25 O -0.453 6.453 26 O -0.521 6.521 27 C -0.121 4.121 28 H 0.288 0.712 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.204 0.796 33 H 0.415 0.585 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -14.316 -7.942 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.105 0.895 9 C 0.114 3.886 10 C -0.234 4.234 11 C -0.092 4.092 12 C -0.267 4.267 13 C 0.024 3.976 14 O -0.605 6.605 15 S 2.765 3.235 16 O -0.933 6.933 17 O -0.892 6.892 18 C -0.679 4.679 19 N 0.025 4.975 20 N -0.156 5.156 21 H 0.296 0.704 22 C -0.026 4.026 23 C -0.224 4.224 24 C 0.367 3.633 25 O -0.337 6.337 26 O -0.335 6.335 27 C -0.144 4.144 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.220 0.780 33 H 0.274 0.726 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.159 -13.057 -7.672 15.188 hybrid contribution -0.736 -0.713 -0.460 1.123 sum -1.895 -13.770 -8.132 16.104 Atomic orbital electron populations 1.69764 1.07803 1.30268 1.33030 1.26032 0.94840 1.01907 0.91922 0.86253 0.80161 0.79577 0.80199 1.18384 1.20067 1.18801 1.19613 0.98413 0.90849 1.38880 0.89484 1.17403 0.90123 0.92765 0.88292 1.21104 1.03830 0.92493 1.05980 1.20285 0.94646 0.97092 0.97164 1.20178 1.02454 0.94003 1.10114 1.18133 0.85462 0.95956 0.98098 1.85724 1.46103 1.90630 1.38085 1.03184 0.74108 0.72088 0.74128 1.93663 1.50468 1.64920 1.84207 1.93756 1.43415 1.81570 1.70491 1.36118 0.95789 1.25713 1.10313 1.77480 1.18797 0.88381 1.12884 1.46685 1.08565 1.09975 1.50418 0.70374 1.23391 0.84349 0.99892 0.95000 1.18921 0.91593 0.93041 1.18878 1.19730 0.86543 0.81897 0.75089 1.91265 1.71737 1.25903 1.44795 1.84464 1.26549 1.40502 1.81948 1.21504 0.97867 0.95734 0.99270 0.90083 0.87886 0.88191 0.88748 0.77981 0.72636 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.25 10.96 55.55 0.61 -19.65 16 2 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 3 Si 0.91 18.41 29.60 -169.99 -5.03 13.37 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.57 9.05 -37.74 -0.34 -11.91 16 8 H 0.09 2.09 7.91 -52.49 -0.41 1.67 16 9 C 0.12 3.08 5.57 -106.85 -0.60 2.49 16 10 C -0.21 -4.99 9.79 -38.85 -0.38 -5.37 16 11 C -0.07 -1.57 10.02 -39.68 -0.40 -1.96 16 12 C -0.25 -5.49 9.27 -39.14 -0.36 -5.86 16 13 C 0.06 1.60 4.79 -39.29 -0.19 1.41 16 14 O -0.65 -15.25 10.15 -51.57 -0.52 -15.77 16 15 S 2.68 58.81 5.41 -107.50 -0.58 58.23 16 16 O -0.93 -22.59 16.33 -66.81 -1.09 -23.68 16 17 O -0.89 -20.41 14.00 -70.85 -0.99 -21.40 16 18 C -0.43 -7.87 6.47 -16.97 -0.11 -7.98 16 19 N -0.15 -2.50 12.55 31.52 0.40 -2.10 16 20 N -0.45 -4.62 7.28 30.86 0.22 -4.39 16 21 H 0.45 2.54 8.96 -182.73 -1.64 0.90 16 22 C 0.13 1.20 11.86 -16.55 -0.20 1.00 16 23 C -0.21 -3.10 6.12 -105.08 -0.64 -3.74 16 24 C 0.53 7.80 8.32 34.41 0.29 8.09 16 25 O -0.45 -8.65 13.59 -27.63 -0.38 -9.03 16 26 O -0.52 -5.02 13.26 -40.66 -0.54 -5.56 16 27 C -0.12 -3.27 7.83 -38.73 -0.30 -3.57 16 28 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.09 1.89 7.96 -52.49 -0.42 1.47 16 32 H 0.20 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.41 2.21 9.11 45.56 0.42 2.62 16 34 H 0.13 3.79 6.16 -52.48 -0.32 3.47 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -36.11 321.25 -9.17 -45.28 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -2.78 Total: 5.53 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -3.32 Total: -25.68 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 1.23 Total: -26.14 kcal Atomic # 8 Polarization: -71.91 SS G_CDS: -3.52 Total: -75.43 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: 58.81 SS G_CDS: -0.58 Total: 58.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.11 -9.17 -45.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.569 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds