Wall clock time and date at job start Tue Mar 31 2020 21:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99745 * 2 1 4 4 H 1.48505 * 109.46777 * 239.99594 * 3 2 1 5 5 H 1.48501 * 109.47337 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47252 * 119.99608 * 3 2 1 7 7 C 1.39930 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00147 * 197.87580 * 7 2 1 9 9 C 1.41404 * 120.00327 * 17.86991 * 7 2 1 10 10 C 1.40761 * 120.22134 * 204.40830 * 9 7 2 11 11 C 1.37629 * 119.85855 * 180.02562 * 10 9 7 12 12 C 1.38571 * 120.30265 * 359.72771 * 11 10 9 13 13 C 1.39109 * 120.44126 * 0.54807 * 12 11 10 14 14 O 1.35906 * 119.93082 * 179.72387 * 13 12 11 15 15 S 1.52194 * 114.00180 * 269.72693 * 14 13 12 16 16 O 1.42102 * 106.40275 * 321.45929 * 15 14 13 17 17 O 1.42097 * 106.40381 * 188.54057 * 15 14 13 18 18 C 1.76205 * 107.21759 * 74.99815 * 15 14 13 19 19 N 1.30427 * 125.99652 * 269.97965 * 18 15 14 20 20 N 1.39928 * 108.91928 * 180.02562 * 19 18 15 21 21 H 0.97002 * 125.73832 * 179.97438 * 20 19 18 22 22 C 1.34219 * 108.51290 * 359.73096 * 20 19 18 23 23 C 1.38124 * 107.40865 * 0.42278 * 22 20 19 24 24 C 1.47290 * 126.42880 * 179.83797 * 23 22 20 25 25 O 1.21525 * 120.00319 * 179.69418 * 24 23 22 26 26 O 1.34763 * 119.99818 * 359.69452 * 24 23 22 27 27 C 1.38138 * 120.13626 * 359.45178 * 13 12 11 28 28 H 0.96995 * 120.00130 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.07303 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.84738 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.77437 * 180.29915 * 12 11 10 32 32 H 1.08004 * 126.29921 * 180.27072 * 22 20 19 33 33 H 0.96692 * 116.99640 * 180.02562 * 26 24 23 34 34 H 1.08010 * 120.15217 * 180.25002 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2876 9 6 1.3521 -2.4071 -0.3747 10 6 1.8261 -3.6499 0.0859 11 6 1.1824 -4.8087 -0.2844 12 6 0.0663 -4.7572 -1.1041 13 6 -0.4094 -3.5362 -1.5711 14 8 -1.5015 -3.4983 -2.3791 15 16 -1.1765 -3.5810 -3.8636 16 8 0.0039 -2.8145 -4.0593 17 8 -2.3916 -3.3271 -4.5552 18 6 -0.7465 -5.2541 -4.2109 19 7 0.4519 -5.7655 -4.1530 20 7 0.3846 -7.1197 -4.4986 21 1 1.1351 -7.7331 -4.5353 22 6 -0.8941 -7.4284 -4.7656 23 6 -1.6399 -6.2774 -4.6017 24 6 -3.0942 -6.1430 -4.7922 25 8 -3.6344 -5.0698 -4.6097 26 8 -3.8258 -7.2102 -5.1690 27 6 0.2226 -2.3620 -1.2108 28 1 -0.4850 0.8400 -0.0004 29 1 2.6935 -3.6942 0.7278 30 1 1.5459 -5.7621 0.0695 31 1 -0.4351 -5.6714 -1.3854 32 1 -1.2703 -8.3977 -5.0575 33 1 -4.7763 -7.0730 -5.2817 34 1 -0.1489 -1.4135 -1.5701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:11 Heat of formation + Delta-G solvation = -117.200135 kcal Electronic energy + Delta-G solvation = -27336.404361 eV Core-core repulsion = 23135.091895 eV Total energy + Delta-G solvation = -4201.312466 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.74198 -41.74956 -40.66183 -38.68647 -38.37275 -37.15632 -36.88711 -35.56558 -33.38571 -31.99333 -31.73213 -30.87100 -27.41467 -25.34965 -24.75018 -24.08916 -23.11169 -22.20638 -21.06955 -19.67380 -19.54785 -18.89314 -18.74517 -18.34057 -17.98721 -17.15087 -17.08687 -16.84243 -16.63847 -16.18382 -15.94668 -15.76145 -15.00903 -14.81925 -14.41622 -14.19662 -14.05183 -13.97149 -13.48085 -13.36972 -13.24617 -12.98600 -12.95635 -12.80595 -12.55642 -12.46134 -12.38587 -12.17620 -11.93061 -11.62422 -11.50875 -11.47170 -11.10257 -10.31969 -9.57023 -9.50886 -8.73857 -6.46378 -0.96367 -0.04146 0.26250 0.65571 0.90118 1.36819 1.37958 1.50109 1.53509 1.56269 1.96175 2.14428 2.17856 2.47347 2.58171 2.88399 3.44198 3.55898 3.86728 3.92345 4.23330 4.34558 4.44397 4.51201 4.67365 4.78718 4.96317 5.02081 5.21823 5.49588 5.65329 5.67616 5.72069 5.78190 5.92667 6.07879 6.16993 6.48517 6.78599 6.81801 7.07070 8.23857 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.004064 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.965131 B = 6887.474730 C = 7569.224670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.087 3.913 10 C -0.216 4.216 11 C -0.066 4.066 12 C -0.235 4.235 13 C 0.056 3.944 14 O -0.661 6.661 15 S 2.693 3.307 16 O -0.973 6.973 17 O -0.915 6.915 18 C -0.457 4.457 19 N -0.185 5.185 20 N -0.418 5.418 21 H 0.473 0.527 22 C 0.180 3.820 23 C -0.246 4.246 24 C 0.534 3.466 25 O -0.512 6.512 26 O -0.496 6.496 27 C -0.166 4.166 28 H 0.292 0.708 29 H 0.126 0.874 30 H 0.151 0.849 31 H 0.123 0.877 32 H 0.269 0.731 33 H 0.435 0.565 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -18.429 -8.249 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.170 1.170 7 C -0.513 4.513 8 H 0.115 0.885 9 C 0.085 3.915 10 C -0.236 4.236 11 C -0.084 4.084 12 C -0.256 4.256 13 C 0.016 3.984 14 O -0.621 6.621 15 S 2.781 3.219 16 O -0.971 6.971 17 O -0.912 6.912 18 C -0.706 4.706 19 N -0.012 5.012 20 N -0.130 5.130 21 H 0.325 0.675 22 C 0.027 3.973 23 C -0.260 4.260 24 C 0.376 3.624 25 O -0.401 6.401 26 O -0.310 6.310 27 C -0.188 4.188 28 H 0.103 0.897 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.141 0.859 32 H 0.285 0.715 33 H 0.297 0.703 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.067 -17.154 -7.958 18.910 hybrid contribution -1.124 0.162 -0.490 1.237 sum -1.191 -16.992 -8.447 19.013 Atomic orbital electron populations 1.69854 1.09496 1.31270 1.34358 1.26973 0.95479 1.05361 0.90908 0.85203 0.78816 0.74992 0.80526 1.18544 1.19433 1.17000 1.19959 0.99057 0.91780 1.40485 0.88525 1.17812 0.90421 0.94544 0.88760 1.21459 1.04360 0.92099 1.05674 1.20800 0.93454 0.98535 0.95634 1.20570 1.02380 0.93820 1.08864 1.18380 0.85376 0.96458 0.98217 1.85665 1.46207 1.91299 1.38929 1.02189 0.73176 0.73290 0.73203 1.93612 1.51390 1.67676 1.84439 1.93735 1.44005 1.83113 1.70365 1.35007 0.97816 1.24378 1.13429 1.77386 1.18145 0.91536 1.14089 1.46693 1.10123 1.08074 1.48136 0.67494 1.24249 0.82599 1.00213 0.90247 1.19155 0.91861 0.93930 1.21099 1.19839 0.86924 0.81829 0.73825 1.91248 1.72817 1.28310 1.47683 1.84397 1.28081 1.37853 1.80670 1.21391 1.00078 0.95549 1.01814 0.89747 0.85651 0.83175 0.85937 0.71544 0.70271 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.31 10.96 21.82 0.24 -45.07 16 2 C 0.03 1.47 5.14 85.25 0.44 1.91 16 3 Si 0.99 38.91 29.60 68.60 2.03 40.94 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.48 -25.95 9.05 23.46 0.21 -25.74 16 8 H 0.10 4.75 7.91 -2.91 -0.02 4.73 16 9 C 0.09 4.77 5.57 -21.31 -0.12 4.65 16 10 C -0.22 -9.92 9.79 22.74 0.22 -9.70 16 11 C -0.07 -2.66 10.02 22.21 0.22 -2.44 16 12 C -0.23 -10.22 9.27 22.56 0.21 -10.01 16 13 C 0.06 2.90 4.79 22.46 0.11 3.01 16 14 O -0.66 -33.02 10.15 -61.77 -0.63 -33.65 16 15 S 2.69 124.42 5.41 -56.49 -0.31 124.11 16 16 O -0.97 -50.43 16.33 -118.78 -1.94 -52.37 16 17 O -0.91 -44.37 14.00 -114.93 -1.61 -45.98 16 18 C -0.46 -16.25 6.47 85.67 0.55 -15.69 16 19 N -0.19 -5.74 12.55 -54.21 -0.68 -6.42 16 20 N -0.42 -6.57 7.28 -56.29 -0.41 -6.98 16 21 H 0.47 2.64 8.96 -213.43 -1.91 0.73 16 22 C 0.18 2.40 11.86 84.30 1.00 3.40 16 23 C -0.25 -6.58 6.12 -20.16 -0.12 -6.70 16 24 C 0.53 14.89 8.32 70.20 0.58 15.47 16 25 O -0.51 -19.91 13.59 27.73 0.38 -19.53 16 26 O -0.50 -7.73 13.26 -56.73 -0.75 -8.48 16 27 C -0.17 -9.51 7.83 22.82 0.18 -9.33 16 28 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 29 H 0.13 5.08 8.06 -2.91 -0.02 5.05 16 30 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.12 4.57 7.96 -2.91 -0.02 4.55 16 32 H 0.27 -0.02 8.06 -2.91 -0.02 -0.05 16 33 H 0.44 3.29 9.11 -74.06 -0.67 2.61 16 34 H 0.10 6.46 6.16 -2.91 -0.02 6.44 16 Total: -1.00 -88.01 321.25 -1.56 -89.57 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -1.37 Total: 15.04 kcal Atomic # 6 Polarization: -54.66 SS G_CDS: 3.49 Total: -51.17 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.85 Total: -58.47 kcal Atomic # 8 Polarization: -155.46 SS G_CDS: -4.55 Total: -160.01 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: 124.42 SS G_CDS: -0.31 Total: 124.11 kcal Total: -88.01 -1.56 -89.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.632 kcal (2) G-P(sol) polarization free energy of solvation -88.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds