Wall clock time and date at job start Tue Mar 31 2020 20:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39664 * 120.14619 * 332.82545 * 3 2 1 5 5 C 1.37928 * 119.86588 * 179.70712 * 4 3 2 6 6 C 1.38368 * 120.16318 * 0.54234 * 5 4 3 7 7 C 1.50699 * 119.85432 * 179.72150 * 6 5 4 8 8 N 1.46500 * 109.47633 * 260.08171 * 7 6 5 9 9 C 1.36927 * 119.99977 * 264.18751 * 8 7 6 10 10 H 1.07998 * 120.00266 * 323.54376 * 9 8 7 11 11 C 1.38811 * 120.00072 * 143.54884 * 9 8 7 12 12 N 1.31628 * 119.99886 * 158.47918 * 11 9 8 13 13 Si 1.86796 * 120.00112 * 338.48064 * 11 9 8 14 14 H 1.48500 * 109.47532 * 95.27650 * 13 11 9 15 15 H 1.48502 * 109.47136 * 215.27791 * 13 11 9 16 16 H 1.48507 * 109.47067 * 335.27671 * 13 11 9 17 17 C 1.46501 * 119.99580 * 83.90432 * 8 7 6 18 18 C 1.50700 * 109.46814 * 84.52301 * 17 8 7 19 19 O 1.20823 * 120.00157 * 359.97438 * 18 17 8 20 20 O 1.34227 * 120.00022 * 179.97438 * 18 17 8 21 21 C 1.38432 * 120.29417 * 359.45819 * 6 5 4 22 22 Br 1.89099 * 119.93371 * 180.29620 * 21 6 5 23 23 C 1.38060 * 120.12867 * 0.26377 * 21 6 5 24 24 H 1.07997 * 120.06265 * 359.97438 * 4 3 2 25 25 H 1.07995 * 119.91856 * 180.27031 * 5 4 3 26 26 H 1.09000 * 109.46733 * 140.08043 * 7 6 5 27 27 H 1.09000 * 109.46824 * 20.08734 * 7 6 5 28 28 H 0.97000 * 119.99611 * 179.97438 * 12 11 9 29 29 H 1.08996 * 109.46831 * 204.51363 * 17 8 7 30 30 H 1.08997 * 109.47302 * 324.51918 * 17 8 7 31 31 H 0.96698 * 117.00016 * 179.97438 * 20 18 17 32 32 H 1.08003 * 120.07655 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -1.0735 0.5516 5 6 4.6491 -1.0697 0.5431 6 6 5.3380 0.0003 -0.0002 7 6 6.8450 0.0001 -0.0002 8 7 7.3336 0.8281 1.1052 9 6 7.6753 2.1352 0.8825 10 1 8.1499 2.4187 -0.0452 11 6 7.4116 3.0959 1.8491 12 7 8.0838 4.2276 1.8528 13 14 6.1029 2.7827 3.1447 14 1 6.7406 2.2418 4.3719 15 1 5.4106 4.0563 3.4670 16 1 5.1171 1.8010 2.6253 17 6 7.4507 0.2592 2.4502 18 6 8.7707 -0.4562 2.5798 19 8 9.5349 -0.4881 1.6446 20 8 9.0974 -1.0580 3.7343 21 6 4.6491 1.0685 -0.5487 22 35 5.6010 2.5215 -1.2959 23 6 3.2686 1.0746 -0.5517 24 1 2.7336 -1.9073 0.9800 25 1 5.1927 -1.9018 0.9654 26 1 7.2084 0.4043 -0.9450 27 1 7.2082 -1.0204 0.1220 28 1 7.8993 4.8990 2.5281 29 1 7.3969 1.0590 3.1888 30 1 6.6369 -0.4462 2.6185 31 1 9.9544 -1.5044 3.7694 32 1 2.7320 1.9086 -0.9795 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622474.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:39 Heat of formation + Delta-G solvation = -15.672874 kcal Electronic energy + Delta-G solvation = -21024.849916 eV Core-core repulsion = 17611.468610 eV Total energy + Delta-G solvation = -3413.381306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03358 -40.51846 -38.05771 -37.27564 -36.57121 -34.01779 -33.27259 -32.60822 -30.21449 -29.51986 -27.87883 -24.81892 -23.51908 -23.16109 -21.81898 -19.73236 -18.95148 -18.88916 -17.74431 -16.95206 -16.85768 -16.53568 -16.22252 -15.80594 -15.40537 -15.09589 -14.68240 -14.57211 -14.38725 -14.11391 -13.99252 -13.86040 -13.61817 -13.12840 -12.85402 -12.51162 -12.43923 -12.32676 -12.08427 -11.95080 -11.68514 -11.47730 -11.37107 -10.81855 -10.47068 -9.89839 -9.51609 -8.88566 -8.06435 -5.44840 -0.30067 0.20690 0.93012 1.31782 1.44638 1.50872 1.59078 1.59385 1.81488 2.32505 2.48396 2.76453 2.80682 3.22810 3.42640 3.80802 3.95863 4.04821 4.31816 4.32931 4.47317 4.55368 4.61791 4.73180 4.83987 5.06149 5.12242 5.22367 5.44969 5.72511 5.84172 5.99190 6.33558 6.37996 6.91262 7.29505 7.64546 7.97595 9.12079 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.006443 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.752143 B = 4344.650182 C = 5149.773432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.285 3.715 3 C -0.042 4.042 4 C -0.043 4.043 5 C -0.107 4.107 6 C -0.047 4.047 7 C 0.172 3.828 8 N -0.574 5.574 9 C -0.220 4.220 10 H 0.057 0.943 11 C -0.003 4.003 12 N -0.943 5.943 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.318 1.318 16 H -0.235 1.235 17 C 0.133 3.867 18 C 0.453 3.547 19 O -0.538 6.538 20 O -0.522 6.522 21 C -0.093 4.093 22 Br -0.039 7.039 23 C -0.053 4.053 24 H 0.170 0.830 25 H 0.171 0.829 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.258 0.742 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.415 0.585 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -12.897 -1.735 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.029 4.029 3 C -0.047 4.047 4 C -0.063 4.063 5 C -0.126 4.126 6 C -0.053 4.053 7 C 0.047 3.953 8 N -0.293 5.293 9 C -0.350 4.350 10 H 0.074 0.926 11 C -0.200 4.200 12 N -0.587 5.587 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.248 1.248 16 H -0.158 1.158 17 C 0.004 3.996 18 C 0.293 3.707 19 O -0.427 6.427 20 O -0.335 6.335 21 C -0.173 4.173 22 Br 0.048 6.952 23 C -0.076 4.076 24 H 0.188 0.812 25 H 0.189 0.811 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.143 0.857 31 H 0.276 0.724 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.078 -12.004 -2.257 14.644 hybrid contribution 0.501 0.367 0.797 1.010 sum -7.578 -11.637 -1.460 13.964 Atomic orbital electron populations 1.81259 1.12954 1.09000 1.10280 1.25631 0.92400 0.92521 0.92377 1.15859 0.83635 0.98203 1.07028 1.21565 0.94072 0.96438 0.94270 1.21329 0.93642 0.98349 0.99275 1.21164 0.98804 0.92353 0.92942 1.20261 0.86725 0.96108 0.92204 1.43845 1.72174 1.08693 1.04600 1.18510 1.30936 0.81983 1.03544 0.92552 1.25742 0.99077 0.95080 1.00077 1.69959 1.41554 1.10130 1.37080 0.86553 0.83162 0.77079 0.80620 1.20154 1.24787 1.15776 1.21245 0.91486 0.97545 0.89276 1.25719 0.90803 0.75002 0.79183 1.90632 1.52578 1.57972 1.41550 1.84579 1.43925 1.66242 1.38751 1.21764 0.94228 0.95719 1.05608 1.96855 1.75272 1.41142 1.81942 1.21157 0.91924 0.97701 0.96775 0.81230 0.81128 0.91189 0.89836 0.93227 0.90306 0.85729 0.72403 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.73 18.54 19.00 0.35 -12.38 16 2 C 0.29 6.74 15.33 88.33 1.35 8.09 16 3 C -0.04 -0.92 5.73 -21.36 -0.12 -1.04 16 4 C -0.04 -0.72 9.76 22.54 0.22 -0.50 16 5 C -0.11 -2.00 9.65 22.23 0.21 -1.78 16 6 C -0.05 -1.28 5.46 -19.79 -0.11 -1.39 16 7 C 0.17 5.43 5.32 85.63 0.46 5.89 16 8 N -0.57 -22.62 1.59 -710.71 -1.13 -23.75 16 9 C -0.22 -10.81 7.38 84.03 0.62 -10.19 16 10 H 0.06 3.17 7.73 -2.91 -0.02 3.14 16 11 C 0.00 -0.18 5.30 84.86 0.45 0.27 16 12 N -0.94 -55.28 13.97 21.65 0.30 -54.97 16 13 Si 0.90 40.46 24.92 68.60 1.71 42.17 16 14 H -0.27 -11.78 6.67 99.48 0.66 -11.11 16 15 H -0.32 -15.50 7.11 99.48 0.71 -14.80 16 16 H -0.23 -9.47 7.11 99.48 0.71 -8.77 16 17 C 0.13 4.65 4.90 85.63 0.42 5.07 16 18 C 0.45 15.63 8.39 71.24 0.60 16.23 16 19 O -0.54 -22.31 17.16 21.97 0.38 -21.93 16 20 O -0.52 -13.77 13.42 -51.39 -0.69 -14.46 16 21 C -0.09 -2.75 6.21 22.27 0.14 -2.61 16 22 Br -0.04 -1.37 29.16 -20.37 -0.59 -1.97 16 23 C -0.05 -1.34 9.49 22.56 0.21 -1.13 16 24 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 25 H 0.17 2.06 8.03 -2.91 -0.02 2.03 16 26 H 0.07 2.44 6.96 -2.39 -0.02 2.42 16 27 H 0.08 2.23 7.97 -2.39 -0.02 2.21 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.08 3.15 3.31 -2.39 -0.01 3.14 16 30 H 0.13 3.26 8.11 -2.39 -0.02 3.24 16 31 H 0.42 7.20 9.10 -74.06 -0.67 6.52 16 32 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -68.74 308.20 5.25 -63.48 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.48 Total: 6.89 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 4.45 Total: 16.91 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -0.48 Total: -91.10 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.31 Total: -36.39 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 1.71 Total: 42.17 kcal Atomic # 35 Polarization: -1.37 SS G_CDS: -0.59 Total: -1.97 kcal Total: -68.74 5.25 -63.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622474.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.811 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds