Wall clock time and date at job start Tue Mar 31 2020 21:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47046 * 300.00210 * 3 2 1 6 6 H 1.48496 * 109.47080 * 60.00108 * 3 2 1 7 7 C 1.38809 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00159 * 200.99723 * 7 2 1 9 9 N 1.36938 * 120.00154 * 20.99919 * 7 2 1 10 10 C 1.46498 * 119.99613 * 18.65431 * 9 7 2 11 11 C 1.50700 * 109.47433 * 264.05956 * 10 9 7 12 12 O 1.20821 * 119.99717 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00065 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00216 * 198.65580 * 9 7 2 15 15 C 1.50693 * 109.47319 * 269.35693 * 14 9 7 16 16 C 1.38712 * 120.40288 * 2.50841 * 15 14 9 17 17 C 1.38569 * 118.43344 * 179.72637 * 16 15 14 18 18 C 1.38389 * 119.15049 * 0.27940 * 17 16 15 19 19 Cl 1.73601 * 119.63312 * 179.97438 * 18 17 16 20 20 N 1.31945 * 120.73666 * 0.02562 * 18 17 16 21 21 C 1.31911 * 121.70055 * 359.97438 * 20 18 17 22 22 C 1.50707 * 119.60710 * 180.02562 * 21 20 18 23 23 F 1.39897 * 109.46920 * 0.03171 * 22 21 20 24 24 F 1.39899 * 109.46800 * 120.03281 * 22 21 20 25 25 F 1.39901 * 109.47300 * 240.03387 * 22 21 20 26 26 H 0.96997 * 119.99829 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47457 * 24.06483 * 10 9 7 28 28 H 1.09006 * 109.47150 * 144.05825 * 10 9 7 29 29 H 0.96696 * 116.99523 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47418 * 149.35142 * 14 9 7 31 31 H 1.09011 * 109.46845 * 29.35812 * 14 9 7 32 32 H 1.07998 * 120.78230 * 0.02562 * 16 15 14 33 33 H 1.07999 * 120.42193 * 180.25851 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0365 -1.2330 0.3357 9 7 1.3939 -2.3489 -0.4239 10 6 0.1836 -2.2688 -1.2455 11 6 -1.0317 -2.3941 -0.3633 12 8 -0.9004 -2.5352 0.8294 13 8 -2.2601 -2.3488 -0.9026 14 6 1.9446 -3.6557 -0.0564 15 6 2.9199 -4.1051 -1.1136 16 6 3.2101 -3.2859 -2.1947 17 6 4.1173 -3.7375 -3.1398 18 6 4.6952 -4.9844 -2.9778 19 17 5.8328 -5.5628 -4.1546 20 7 4.3903 -5.7391 -1.9393 21 6 3.5311 -5.3405 -1.0211 22 6 3.2179 -6.2407 0.1463 23 9 3.9538 -7.4250 0.0325 24 9 3.5578 -5.5931 1.3388 25 9 1.8512 -6.5397 0.1511 26 1 -0.4850 0.8400 0.0004 27 1 0.1591 -1.3103 -1.7639 28 1 0.1867 -3.0772 -1.9767 29 1 -3.0089 -2.4331 -0.2966 30 1 1.1354 -4.3816 0.0236 31 1 2.4581 -3.5770 0.9019 32 1 2.7437 -2.3170 -2.2950 33 1 4.3699 -3.1242 -3.9922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:12 Heat of formation + Delta-G solvation = -177.845715 kcal Electronic energy + Delta-G solvation = -27915.240756 eV Core-core repulsion = 23167.398054 eV Total energy + Delta-G solvation = -4747.842703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -50.04051 -47.53731 -47.49656 -40.46400 -38.83187 -36.86256 -36.14088 -34.59968 -32.93600 -32.56825 -30.91089 -27.94821 -26.73137 -25.96708 -23.49297 -22.55432 -21.60640 -20.15216 -18.62338 -18.42662 -18.39779 -17.11538 -16.88559 -16.60358 -15.99759 -15.38544 -15.22440 -14.90452 -14.65893 -14.27222 -14.25901 -14.24692 -13.96473 -13.71788 -13.67078 -13.60528 -13.40126 -13.26464 -12.60655 -12.25024 -11.98395 -11.60723 -11.56566 -11.44142 -11.25846 -11.09501 -10.85737 -10.35943 -10.26032 -10.12411 -9.88410 -9.83453 -9.36849 -8.89214 -8.77866 -7.36738 -6.15355 -3.54663 0.64054 1.09871 1.64674 2.61737 3.21136 3.30821 3.32481 3.36485 3.62521 3.75077 4.07568 4.09350 4.38788 4.49113 4.67231 4.80221 4.93829 4.98036 5.13388 5.29682 5.32570 5.94031 5.97385 6.03919 6.14822 6.44464 6.48547 6.72160 6.77494 7.37573 7.50180 7.73466 7.91936 8.76882 9.27587 9.44939 9.85601 10.95277 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.004733 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.248832 B = 5913.874367 C = 7011.161060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.011 3.989 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.273 4.273 8 H 0.084 0.916 9 N -0.560 5.560 10 C 0.187 3.813 11 C 0.477 3.523 12 O -0.511 6.511 13 O -0.544 6.544 14 C 0.161 3.839 15 C -0.079 4.079 16 C -0.036 4.036 17 C -0.126 4.126 18 C 0.160 3.840 19 Cl -0.033 7.033 20 N -0.444 5.444 21 C 0.037 3.963 22 C 0.526 3.474 23 F -0.166 7.166 24 F -0.167 7.167 25 F -0.169 7.169 26 H 0.260 0.740 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.383 0.617 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.177 0.823 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.842 -8.126 -7.033 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.189 4.189 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.216 1.216 7 C -0.401 4.401 8 H 0.101 0.899 9 N -0.279 5.279 10 C 0.058 3.942 11 C 0.316 3.684 12 O -0.396 6.396 13 O -0.354 6.354 14 C 0.033 3.967 15 C -0.084 4.084 16 C -0.062 4.062 17 C -0.147 4.147 18 C -0.007 4.007 19 Cl -0.004 7.004 20 N -0.154 5.154 21 C -0.102 4.102 22 C 0.471 3.529 23 F -0.147 7.147 24 F -0.148 7.148 25 F -0.150 7.150 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.072 0.928 29 H 0.239 0.761 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.194 0.806 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.609 -8.859 -6.919 12.563 hybrid contribution -0.480 1.463 0.640 1.667 sum 5.130 -7.397 -6.279 10.975 Atomic orbital electron populations 1.69849 1.05398 1.26237 1.52356 1.24942 0.95206 0.98811 0.99895 0.86101 0.79345 0.83094 0.77501 1.19985 1.21216 1.21589 1.19323 0.94982 0.84166 1.41668 0.89860 1.43979 1.25349 1.00818 1.57745 1.20271 0.81290 1.02386 0.90292 1.25025 0.83512 0.70207 0.89647 1.90530 1.86193 1.45495 1.17393 1.84604 1.17616 1.86789 1.46406 1.20095 0.93928 0.89355 0.93342 1.22240 0.96353 0.91563 0.98287 1.21946 0.93288 1.00921 0.90036 1.22159 0.96769 0.94569 1.01193 1.21380 0.95840 0.91617 0.91814 1.98395 1.58572 1.89788 1.53681 1.66293 1.12661 1.35329 1.01149 1.20509 0.99522 0.94409 0.95767 1.17786 0.74639 0.78675 0.81847 1.93209 1.76987 1.48544 1.96010 1.93240 1.92052 1.81242 1.48269 1.93225 1.31694 1.93458 1.96620 0.92949 0.86747 0.92845 0.76098 0.90938 0.89403 0.80596 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.21 9.22 55.49 0.51 -22.69 16 2 C 0.01 0.28 4.86 -17.43 -0.08 0.19 16 3 Si 0.91 19.61 29.60 -169.99 -5.03 14.57 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.27 -6.41 8.95 -15.06 -0.13 -6.55 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 9 N -0.56 -11.84 0.86 -175.99 -0.15 -11.99 16 10 C 0.19 3.80 5.17 -5.19 -0.03 3.78 16 11 C 0.48 10.57 6.49 36.01 0.23 10.81 16 12 O -0.51 -13.16 16.76 -18.75 -0.31 -13.47 16 13 O -0.54 -10.23 13.42 -39.26 -0.53 -10.75 16 14 C 0.16 3.00 4.77 -5.20 -0.02 2.98 16 15 C -0.08 -1.28 5.85 -104.48 -0.61 -1.90 16 16 C -0.04 -0.53 9.28 -39.28 -0.36 -0.89 16 17 C -0.13 -1.60 9.88 -39.40 -0.39 -1.99 16 18 C 0.16 2.23 7.27 -17.45 -0.13 2.10 16 19 Cl -0.03 -0.39 29.11 -51.86 -1.51 -1.90 16 20 N -0.44 -7.04 9.71 -6.62 -0.06 -7.10 16 21 C 0.04 0.59 6.26 -82.59 -0.52 0.07 16 22 C 0.53 8.20 2.88 36.01 0.10 8.30 16 23 F -0.17 -2.58 16.85 2.25 0.04 -2.54 16 24 F -0.17 -2.64 15.81 2.25 0.04 -2.61 16 25 F -0.17 -2.62 15.70 2.25 0.04 -2.58 16 26 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.11 2.48 6.50 -51.93 -0.34 2.14 16 28 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 29 H 0.38 5.73 9.10 45.56 0.41 6.15 16 30 H 0.07 1.36 6.75 -51.93 -0.35 1.01 16 31 H 0.09 1.72 7.00 -51.92 -0.36 1.36 16 32 H 0.18 2.70 6.37 -52.49 -0.33 2.36 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -28.73 318.15 -5.49 -34.22 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -1.37 Total: 5.14 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: -1.94 Total: 16.91 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.30 Total: -41.79 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.84 Total: -24.23 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 0.11 Total: -7.73 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.73 -5.49 -34.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.622 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds