Wall clock time and date at job start Tue Mar 31 2020 21:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47046 * 300.00210 * 3 2 1 6 6 H 1.48496 * 109.47080 * 60.00108 * 3 2 1 7 7 C 1.38809 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00159 * 200.99723 * 7 2 1 9 9 N 1.36938 * 120.00154 * 20.99919 * 7 2 1 10 10 C 1.46498 * 119.99613 * 18.65431 * 9 7 2 11 11 C 1.50700 * 109.47433 * 264.05956 * 10 9 7 12 12 O 1.20821 * 119.99717 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00065 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00216 * 198.65580 * 9 7 2 15 15 C 1.50693 * 109.47319 * 269.35693 * 14 9 7 16 16 C 1.38712 * 120.40288 * 2.50841 * 15 14 9 17 17 C 1.38569 * 118.43344 * 179.72637 * 16 15 14 18 18 C 1.38389 * 119.15049 * 0.27940 * 17 16 15 19 19 Cl 1.73601 * 119.63312 * 179.97438 * 18 17 16 20 20 N 1.31945 * 120.73666 * 0.02562 * 18 17 16 21 21 C 1.31911 * 121.70055 * 359.97438 * 20 18 17 22 22 C 1.50707 * 119.60710 * 180.02562 * 21 20 18 23 23 F 1.39897 * 109.46920 * 0.03171 * 22 21 20 24 24 F 1.39899 * 109.46800 * 120.03281 * 22 21 20 25 25 F 1.39901 * 109.47300 * 240.03387 * 22 21 20 26 26 H 0.96997 * 119.99829 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47457 * 24.06483 * 10 9 7 28 28 H 1.09006 * 109.47150 * 144.05825 * 10 9 7 29 29 H 0.96696 * 116.99523 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47418 * 149.35142 * 14 9 7 31 31 H 1.09011 * 109.46845 * 29.35812 * 14 9 7 32 32 H 1.07998 * 120.78230 * 0.02562 * 16 15 14 33 33 H 1.07999 * 120.42193 * 180.25851 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0365 -1.2330 0.3357 9 7 1.3939 -2.3489 -0.4239 10 6 0.1836 -2.2688 -1.2455 11 6 -1.0317 -2.3941 -0.3633 12 8 -0.9004 -2.5352 0.8294 13 8 -2.2601 -2.3488 -0.9026 14 6 1.9446 -3.6557 -0.0564 15 6 2.9199 -4.1051 -1.1136 16 6 3.2101 -3.2859 -2.1947 17 6 4.1173 -3.7375 -3.1398 18 6 4.6952 -4.9844 -2.9778 19 17 5.8328 -5.5628 -4.1546 20 7 4.3903 -5.7391 -1.9393 21 6 3.5311 -5.3405 -1.0211 22 6 3.2179 -6.2407 0.1463 23 9 3.9538 -7.4250 0.0325 24 9 3.5578 -5.5931 1.3388 25 9 1.8512 -6.5397 0.1511 26 1 -0.4850 0.8400 0.0004 27 1 0.1591 -1.3103 -1.7639 28 1 0.1867 -3.0772 -1.9767 29 1 -3.0089 -2.4331 -0.2966 30 1 1.1354 -4.3816 0.0236 31 1 2.4581 -3.5770 0.9019 32 1 2.7437 -2.3170 -2.2950 33 1 4.3699 -3.1242 -3.9922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:11 Heat of formation + Delta-G solvation = -193.862250 kcal Electronic energy + Delta-G solvation = -27915.935286 eV Core-core repulsion = 23167.398054 eV Total energy + Delta-G solvation = -4748.537232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.28310 -48.78603 -48.73607 -41.65664 -40.52560 -38.05781 -37.55213 -36.29885 -34.42514 -33.73849 -32.50279 -29.49777 -28.23609 -27.27942 -25.01026 -23.77001 -23.05483 -21.79242 -19.82975 -19.66968 -19.64152 -18.82901 -18.49236 -17.87634 -17.33751 -16.93964 -16.74033 -16.19836 -15.98689 -15.93202 -15.52789 -15.45009 -15.34160 -15.19182 -15.12225 -14.88125 -14.74440 -14.54105 -13.80826 -13.73115 -13.52721 -13.15627 -12.88595 -12.82913 -12.59968 -12.47656 -12.39956 -12.09245 -11.99131 -11.83699 -11.19258 -11.03068 -10.98387 -10.61633 -10.05353 -9.09967 -7.98860 -5.37779 -0.51106 -0.06860 0.57987 1.40734 1.50296 1.56003 1.63753 2.02931 2.20780 2.40778 2.44112 2.77111 2.86328 3.19468 3.25568 3.33755 3.55692 3.75982 3.85916 3.99839 4.17567 4.44949 4.59020 4.71807 4.80158 5.04717 5.18894 5.19870 5.31867 5.65198 6.14939 6.17654 6.22455 6.97580 7.57184 7.74260 8.08710 9.10259 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.004733 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.248832 B = 5913.874367 C = 7011.161060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.035 4.035 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.308 1.308 7 C -0.265 4.265 8 H 0.083 0.917 9 N -0.568 5.568 10 C 0.188 3.812 11 C 0.477 3.523 12 O -0.554 6.554 13 O -0.535 6.535 14 C 0.169 3.831 15 C -0.087 4.087 16 C -0.037 4.037 17 C -0.106 4.106 18 C 0.156 3.844 19 Cl -0.011 7.011 20 N -0.460 5.460 21 C 0.033 3.967 22 C 0.526 3.474 23 F -0.166 7.166 24 F -0.171 7.171 25 F -0.170 7.170 26 H 0.252 0.748 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.401 0.599 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.173 0.827 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -8.304 -8.835 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.231 4.231 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.236 1.236 7 C -0.394 4.394 8 H 0.100 0.900 9 N -0.287 5.287 10 C 0.059 3.941 11 C 0.319 3.681 12 O -0.443 6.443 13 O -0.346 6.346 14 C 0.042 3.958 15 C -0.092 4.092 16 C -0.063 4.063 17 C -0.126 4.126 18 C -0.010 4.010 19 Cl 0.017 6.983 20 N -0.170 5.170 21 C -0.106 4.106 22 C 0.471 3.529 23 F -0.147 7.147 24 F -0.152 7.152 25 F -0.151 7.151 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.260 0.740 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.190 0.810 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.751 -9.067 -8.750 14.295 hybrid contribution -0.804 1.420 1.138 1.990 sum 5.946 -7.647 -7.612 12.320 Atomic orbital electron populations 1.69983 1.06453 1.25972 1.54446 1.25529 0.95736 1.01159 1.00695 0.85221 0.78818 0.79904 0.76437 1.18896 1.20977 1.23589 1.19506 0.94924 0.84952 1.39996 0.89972 1.44057 1.25624 1.01062 1.57926 1.20355 0.80402 1.02986 0.90361 1.25388 0.84643 0.68888 0.89196 1.90510 1.86968 1.47697 1.19174 1.84543 1.17478 1.86065 1.46523 1.19951 0.94074 0.88190 0.93629 1.21840 0.96673 0.92248 0.98424 1.21923 0.93794 1.00484 0.90060 1.22448 0.94809 0.94102 1.01250 1.21730 0.95847 0.91912 0.91548 1.98408 1.57685 1.89641 1.52562 1.66325 1.12904 1.36057 1.01762 1.20398 0.99911 0.94253 0.96011 1.17814 0.74567 0.78715 0.81821 1.93204 1.76969 1.48519 1.96002 1.93231 1.92080 1.81333 1.48579 1.93219 1.31817 1.93472 1.96625 0.93870 0.87874 0.89454 0.74050 0.91432 0.91031 0.80995 0.79463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.18 9.22 21.65 0.20 -47.98 16 2 C -0.03 -1.69 4.86 84.86 0.41 -1.28 16 3 Si 0.97 40.23 29.60 68.60 2.03 42.26 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.31 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.26 -12.33 8.95 84.03 0.75 -11.58 16 8 H 0.08 3.78 7.91 -2.91 -0.02 3.76 16 9 N -0.57 -23.75 0.86 -710.70 -0.61 -24.36 16 10 C 0.19 7.51 5.17 85.63 0.44 7.95 16 11 C 0.48 21.02 6.49 71.24 0.46 21.49 16 12 O -0.55 -28.84 16.76 21.98 0.37 -28.48 16 13 O -0.53 -19.57 13.42 -51.41 -0.69 -20.26 16 14 C 0.17 6.27 4.77 85.63 0.41 6.68 16 15 C -0.09 -2.71 5.85 -19.77 -0.12 -2.83 16 16 C -0.04 -1.00 9.28 22.46 0.21 -0.79 16 17 C -0.11 -2.33 9.88 22.38 0.22 -2.11 16 18 C 0.16 3.91 7.27 84.71 0.62 4.53 16 19 Cl -0.01 -0.24 29.11 -2.72 -0.08 -0.32 16 20 N -0.46 -13.72 9.71 -174.84 -1.70 -15.41 16 21 C 0.03 1.01 6.26 42.53 0.27 1.28 16 22 C 0.53 16.16 2.88 71.24 0.21 16.37 16 23 F -0.17 -5.01 16.85 44.97 0.76 -4.26 16 24 F -0.17 -5.42 15.81 44.97 0.71 -4.71 16 25 F -0.17 -5.24 15.70 44.97 0.71 -4.53 16 26 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 27 H 0.10 4.41 6.50 -2.39 -0.02 4.40 16 28 H 0.09 2.86 8.12 -2.38 -0.02 2.84 16 29 H 0.40 11.58 9.10 -74.06 -0.67 10.91 16 30 H 0.07 2.54 6.75 -2.39 -0.02 2.53 16 31 H 0.07 2.85 7.00 -2.38 -0.02 2.83 16 32 H 0.17 4.91 6.37 -2.91 -0.02 4.89 16 33 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -60.84 318.15 6.12 -54.72 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.54 Total: 13.61 kcal Atomic # 6 Polarization: 35.83 SS G_CDS: 3.88 Total: 39.71 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.11 Total: -87.75 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.32 Total: -48.73 kcal Atomic # 9 Polarization: -15.67 SS G_CDS: 2.17 Total: -13.50 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -60.84 6.12 -54.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.145 kcal (2) G-P(sol) polarization free energy of solvation -60.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds