Wall clock time and date at job start Tue Mar 31 2020 21:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47044 * 269.99769 * 3 2 1 5 5 H 1.48496 * 109.47533 * 29.99981 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00000 * 3 2 1 7 7 C 1.40023 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99965 * 163.17580 * 7 2 1 9 9 C 1.41550 * 120.00254 * 343.17566 * 7 2 1 10 10 C 1.41186 * 120.99453 * 156.12910 * 9 7 2 11 11 C 1.36558 * 119.14770 * 180.02562 * 10 9 7 12 12 N 1.32095 * 121.26577 * 0.02562 * 11 10 9 13 13 C 1.32527 * 122.21956 * 0.02562 * 12 11 10 14 14 N 1.39081 * 119.66009 * 179.97438 * 13 12 11 15 15 S 1.65607 * 119.99766 * 359.97438 * 14 13 12 16 16 O 1.42094 * 106.40035 * 178.54150 * 15 14 13 17 17 O 1.42101 * 106.40186 * 311.46388 * 15 14 13 18 18 C 1.76194 * 107.21672 * 65.00231 * 15 14 13 19 19 C 1.34160 * 125.42615 * 90.00311 * 18 15 14 20 20 C 1.47061 * 105.94775 * 179.97438 * 19 18 15 21 21 C 1.47232 * 127.20130 * 180.02562 * 20 19 18 22 22 O 1.21535 * 119.99926 * 359.97438 * 21 20 19 23 23 O 1.34766 * 120.00117 * 179.97438 * 21 20 19 24 24 C 1.36501 * 105.59993 * 359.97438 * 20 19 18 25 25 O 1.33627 * 108.37860 * 359.77307 * 24 20 19 26 26 C 1.38743 * 120.68580 * 359.97438 * 13 12 11 27 27 H 0.97003 * 119.99468 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.42790 * 0.04556 * 10 9 7 29 29 H 1.07997 * 119.36764 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00298 * 179.97438 * 14 13 12 31 31 H 1.08000 * 127.03083 * 359.93417 * 19 18 15 32 32 H 0.96704 * 117.00496 * 179.97438 * 23 21 20 33 33 H 1.07991 * 125.80965 * 180.02562 * 24 20 19 34 34 H 1.07996 * 120.66776 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0529 -1.2329 -0.2702 9 6 1.3452 -2.4121 0.3559 10 6 1.8202 -3.6646 -0.0903 11 6 1.1516 -4.7980 0.2748 12 7 0.0724 -4.7427 1.0345 13 6 -0.4191 -3.5959 1.4814 14 7 -1.5593 -3.5996 2.2779 15 16 -2.2959 -5.0321 2.6626 16 8 -3.3945 -4.7054 3.5025 17 8 -2.4352 -5.7514 1.4451 18 6 -1.1659 -5.9493 3.6558 19 6 -1.0868 -5.8967 4.9940 20 6 -0.0098 -6.8241 5.3719 21 6 0.4683 -7.1267 6.7311 22 8 -0.0424 -6.5821 7.6902 23 8 1.4722 -8.0074 6.9119 24 6 0.4532 -7.3465 4.1988 25 8 -0.2514 -6.8168 3.1946 26 6 0.1919 -2.3917 1.1630 27 1 -0.4849 0.8401 -0.0004 28 1 2.7012 -3.7256 -0.7121 29 1 1.5115 -5.7579 -0.0649 30 1 -1.9231 -2.7632 2.6080 31 1 -1.6901 -5.2956 5.6581 32 1 1.7520 -8.1735 7.8225 33 1 1.2502 -8.0684 4.0997 34 1 -0.2086 -1.4574 1.5277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610624293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:01 Heat of formation + Delta-G solvation = -112.595966 kcal Electronic energy + Delta-G solvation = -26389.968786 eV Core-core repulsion = 22188.855971 eV Total energy + Delta-G solvation = -4201.112815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.72564 -40.07352 -38.80242 -37.05773 -36.30201 -35.66710 -34.87013 -33.91559 -33.19854 -30.73484 -30.50387 -28.39555 -26.16870 -24.93943 -22.58540 -22.06845 -21.60650 -21.22986 -19.63167 -18.78357 -17.98936 -17.74446 -17.48069 -16.51272 -16.33019 -16.12646 -15.73494 -15.52357 -15.36819 -14.81625 -14.39248 -14.20667 -13.91357 -13.36071 -13.22345 -13.15823 -12.89809 -12.72941 -12.17566 -11.99041 -11.88171 -11.70271 -11.61375 -11.36107 -11.30094 -11.04451 -10.97984 -10.66703 -10.41245 -10.21030 -10.17356 -9.51864 -9.43337 -8.27913 -8.17257 -7.34387 -6.98276 -4.75958 0.36232 0.90849 1.25633 2.49339 2.59472 2.68315 2.78002 2.92445 2.95116 2.98345 3.10904 3.22143 3.74949 3.79134 4.34236 4.45746 4.48252 4.74687 5.11352 5.15098 5.26630 5.48239 5.50266 5.80708 6.12965 6.16334 6.51170 6.59675 6.61882 6.82047 6.82638 7.00406 7.28746 7.38991 7.62926 7.71511 7.96316 8.31701 8.57384 8.59949 9.27745 9.92029 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.003544 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.864663 B = 7898.302730 C = 8515.938817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.085 0.915 9 C 0.145 3.855 10 C -0.282 4.282 11 C 0.138 3.862 12 N -0.600 5.600 13 C 0.345 3.655 14 N -1.023 6.023 15 S 2.723 3.277 16 O -0.951 6.951 17 O -0.909 6.909 18 C -0.541 4.541 19 C -0.048 4.048 20 C -0.259 4.259 21 C 0.561 3.439 22 O -0.513 6.513 23 O -0.514 6.514 24 C 0.098 3.902 25 O -0.085 6.085 26 C -0.234 4.234 27 H 0.285 0.715 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.430 0.570 31 H 0.178 0.822 32 H 0.417 0.583 33 H 0.228 0.772 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -8.651 8.449 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.137 3.863 10 C -0.306 4.306 11 C -0.014 4.014 12 N -0.322 5.322 13 C 0.121 3.879 14 N -0.776 5.776 15 S 2.804 3.196 16 O -0.941 6.941 17 O -0.898 6.898 18 C -0.669 4.669 19 C -0.069 4.069 20 C -0.262 4.262 21 C 0.405 3.595 22 O -0.402 6.402 23 O -0.327 6.327 24 C 0.021 3.979 25 O 0.026 5.974 26 C -0.262 4.262 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.146 0.854 30 H 0.267 0.733 31 H 0.195 0.805 32 H 0.276 0.724 33 H 0.245 0.755 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.032 -9.597 7.962 12.470 hybrid contribution 1.500 1.810 1.210 2.644 sum 1.468 -7.787 9.172 12.121 Atomic orbital electron populations 1.69770 1.07769 1.29844 1.32980 1.26008 0.94803 1.01710 0.91795 0.86234 0.80633 0.80031 0.79481 1.19238 1.19887 1.18272 1.19640 0.98001 0.90708 1.39622 0.89732 1.17625 0.89719 0.92380 0.86602 1.21592 1.05518 0.93772 1.09730 1.21199 0.89868 0.97121 0.93209 1.66614 1.17818 1.26139 1.21641 1.17658 0.86456 0.91886 0.91949 1.53019 1.39270 1.24657 1.60605 1.01718 0.71570 0.72885 0.73392 1.93649 1.46464 1.83817 1.70186 1.93617 1.83642 1.71259 1.41330 1.35861 1.12257 1.11026 1.07739 1.22841 0.94907 0.95786 0.93395 1.20537 1.05418 1.08816 0.91436 1.19547 0.76377 0.75496 0.88058 1.90917 1.56663 1.50213 1.42424 1.84534 1.50634 1.59280 1.38221 1.25311 0.93391 0.94196 0.84967 1.84143 1.36475 1.43036 1.33771 1.21593 1.02000 0.95590 1.06978 0.90367 0.87682 0.85412 0.73337 0.80508 0.72412 0.75533 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.30 10.92 55.55 0.61 -17.70 16 2 C 0.08 1.77 5.20 -17.34 -0.09 1.68 16 3 Si 0.91 17.00 29.59 -169.99 -5.03 11.97 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.45 -10.81 9.12 -37.65 -0.34 -11.16 16 8 H 0.08 1.94 7.90 -52.48 -0.41 1.52 16 9 C 0.15 3.55 5.60 -106.55 -0.60 2.95 16 10 C -0.28 -6.27 9.85 -39.07 -0.38 -6.65 16 11 C 0.14 2.91 11.10 -18.04 -0.20 2.71 16 12 N -0.60 -13.20 8.03 -12.82 -0.10 -13.31 16 13 C 0.35 7.56 7.33 -154.98 -1.14 6.43 16 14 N -1.02 -18.48 5.85 31.09 0.18 -18.30 16 15 S 2.72 47.38 5.52 -107.50 -0.59 46.79 16 16 O -0.95 -16.51 17.81 -57.17 -1.02 -17.52 16 17 O -0.91 -18.76 16.89 -57.30 -0.97 -19.72 16 18 C -0.54 -8.72 6.91 29.30 0.20 -8.52 16 19 C -0.05 -0.71 10.70 -37.44 -0.40 -1.11 16 20 C -0.26 -3.45 6.31 -103.29 -0.65 -4.10 16 21 C 0.56 6.92 8.33 34.38 0.29 7.21 16 22 O -0.51 -7.78 17.77 -19.29 -0.34 -8.13 16 23 O -0.51 -4.27 13.28 -40.67 -0.54 -4.81 16 24 C 0.10 1.16 11.94 30.11 0.36 1.52 16 25 O -0.08 -1.32 10.25 7.71 0.08 -1.24 16 26 C -0.23 -5.53 8.63 -38.43 -0.33 -5.86 16 27 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 28 H 0.11 2.13 8.06 -52.48 -0.42 1.71 16 29 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.43 6.53 8.82 -34.48 -0.30 6.23 16 31 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.42 1.52 9.11 45.56 0.42 1.94 16 33 H 0.23 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.13 3.08 6.20 -52.49 -0.33 2.76 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -33.16 330.79 -7.49 -40.64 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -1.45 Total: 11.24 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -3.29 Total: -14.90 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.69 Total: -49.31 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -2.79 Total: -51.42 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 16 Polarization: 47.38 SS G_CDS: -0.59 Total: 46.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.16 -7.49 -40.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610624293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.955 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds