Wall clock time and date at job start Tue Mar 31 2020 21:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47044 * 269.99769 * 3 2 1 5 5 H 1.48496 * 109.47533 * 29.99981 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00000 * 3 2 1 7 7 C 1.40023 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99965 * 163.17580 * 7 2 1 9 9 C 1.41550 * 120.00254 * 343.17566 * 7 2 1 10 10 C 1.41186 * 120.99453 * 156.12910 * 9 7 2 11 11 C 1.36558 * 119.14770 * 180.02562 * 10 9 7 12 12 N 1.32095 * 121.26577 * 0.02562 * 11 10 9 13 13 C 1.32527 * 122.21956 * 0.02562 * 12 11 10 14 14 N 1.39081 * 119.66009 * 179.97438 * 13 12 11 15 15 S 1.65607 * 119.99766 * 359.97438 * 14 13 12 16 16 O 1.42094 * 106.40035 * 178.54150 * 15 14 13 17 17 O 1.42101 * 106.40186 * 311.46388 * 15 14 13 18 18 C 1.76194 * 107.21672 * 65.00231 * 15 14 13 19 19 C 1.34160 * 125.42615 * 90.00311 * 18 15 14 20 20 C 1.47061 * 105.94775 * 179.97438 * 19 18 15 21 21 C 1.47232 * 127.20130 * 180.02562 * 20 19 18 22 22 O 1.21535 * 119.99926 * 359.97438 * 21 20 19 23 23 O 1.34766 * 120.00117 * 179.97438 * 21 20 19 24 24 C 1.36501 * 105.59993 * 359.97438 * 20 19 18 25 25 O 1.33627 * 108.37860 * 359.77307 * 24 20 19 26 26 C 1.38743 * 120.68580 * 359.97438 * 13 12 11 27 27 H 0.97003 * 119.99468 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.42790 * 0.04556 * 10 9 7 29 29 H 1.07997 * 119.36764 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00298 * 179.97438 * 14 13 12 31 31 H 1.08000 * 127.03083 * 359.93417 * 19 18 15 32 32 H 0.96704 * 117.00496 * 179.97438 * 23 21 20 33 33 H 1.07991 * 125.80965 * 180.02562 * 24 20 19 34 34 H 1.07996 * 120.66776 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0529 -1.2329 -0.2702 9 6 1.3452 -2.4121 0.3559 10 6 1.8202 -3.6646 -0.0903 11 6 1.1516 -4.7980 0.2748 12 7 0.0724 -4.7427 1.0345 13 6 -0.4191 -3.5959 1.4814 14 7 -1.5593 -3.5996 2.2779 15 16 -2.2959 -5.0321 2.6626 16 8 -3.3945 -4.7054 3.5025 17 8 -2.4352 -5.7514 1.4451 18 6 -1.1659 -5.9493 3.6558 19 6 -1.0868 -5.8967 4.9940 20 6 -0.0098 -6.8241 5.3719 21 6 0.4683 -7.1267 6.7311 22 8 -0.0424 -6.5821 7.6902 23 8 1.4722 -8.0074 6.9119 24 6 0.4532 -7.3465 4.1988 25 8 -0.2514 -6.8168 3.1946 26 6 0.1919 -2.3917 1.1630 27 1 -0.4849 0.8401 -0.0004 28 1 2.7012 -3.7256 -0.7121 29 1 1.5115 -5.7579 -0.0649 30 1 -1.9231 -2.7632 2.6080 31 1 -1.6901 -5.2956 5.6581 32 1 1.7520 -8.1735 7.8225 33 1 1.2502 -8.0684 4.0997 34 1 -0.2086 -1.4574 1.5277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610624293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:00 Heat of formation + Delta-G solvation = -137.571960 kcal Electronic energy + Delta-G solvation = -26391.051826 eV Core-core repulsion = 22188.855971 eV Total energy + Delta-G solvation = -4202.195855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.81895 -40.97911 -40.48774 -38.50471 -37.15352 -37.14692 -36.50296 -35.57605 -34.29337 -32.46899 -31.60342 -30.06214 -27.92839 -25.90983 -23.97223 -23.53313 -23.25364 -22.27020 -20.85988 -20.17522 -19.27641 -18.93051 -18.88125 -17.95941 -17.46052 -17.33172 -17.02083 -16.80580 -16.49432 -16.30383 -16.05779 -15.86263 -15.00467 -14.83696 -14.75369 -14.40811 -14.33425 -13.87860 -13.65078 -13.45540 -13.25850 -13.21685 -12.90071 -12.74600 -12.71129 -12.65197 -12.24982 -11.97406 -11.95933 -11.90388 -11.33565 -11.19673 -10.52142 -10.00055 -9.93804 -9.02552 -8.68222 -6.56202 -1.00733 -0.07707 0.11194 0.89641 0.99671 1.42412 1.50521 1.53790 1.58998 1.71000 1.82378 2.12176 2.19608 2.43302 2.77125 3.31957 3.39752 3.52919 3.55619 3.74357 3.98978 4.39932 4.53797 4.54605 4.79035 4.87037 4.94325 5.09972 5.17644 5.29521 5.43187 5.51685 5.55919 5.84077 5.96041 6.22502 6.56037 6.81338 6.83048 6.87424 7.57139 8.24386 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.003544 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.864663 B = 7898.302730 C = 8515.938817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.480 4.480 8 H 0.087 0.913 9 C 0.117 3.883 10 C -0.294 4.294 11 C 0.136 3.864 12 N -0.604 5.604 13 C 0.349 3.651 14 N -1.021 6.021 15 S 2.745 3.255 16 O -0.954 6.954 17 O -0.945 6.945 18 C -0.565 4.565 19 C -0.045 4.045 20 C -0.279 4.279 21 C 0.571 3.429 22 O -0.548 6.548 23 O -0.497 6.497 24 C 0.125 3.875 25 O -0.105 6.105 26 C -0.258 4.258 27 H 0.293 0.707 28 H 0.119 0.881 29 H 0.164 0.836 30 H 0.439 0.561 31 H 0.186 0.814 32 H 0.439 0.561 33 H 0.277 0.723 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -9.506 9.204 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.510 4.510 8 H 0.105 0.895 9 C 0.109 3.891 10 C -0.318 4.318 11 C -0.015 4.015 12 N -0.327 5.327 13 C 0.123 3.877 14 N -0.774 5.774 15 S 2.830 3.170 16 O -0.944 6.944 17 O -0.934 6.934 18 C -0.696 4.696 19 C -0.066 4.066 20 C -0.282 4.282 21 C 0.416 3.584 22 O -0.441 6.441 23 O -0.311 6.311 24 C 0.049 3.951 25 O 0.004 5.996 26 C -0.286 4.286 27 H 0.104 0.896 28 H 0.137 0.863 29 H 0.181 0.819 30 H 0.278 0.722 31 H 0.203 0.797 32 H 0.302 0.698 33 H 0.292 0.708 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.354 -10.448 8.708 13.669 hybrid contribution 1.109 1.895 1.066 2.440 sum 2.463 -8.554 9.774 13.220 Atomic orbital electron populations 1.69814 1.09104 1.31129 1.33294 1.26811 0.95477 1.04640 0.90845 0.85167 0.79173 0.75683 0.79548 1.18729 1.19189 1.18084 1.19930 0.98402 0.91699 1.41008 0.89461 1.18035 0.90394 0.93575 0.87136 1.21805 1.06286 0.93505 1.10196 1.21773 0.89201 0.98329 0.92226 1.66797 1.18139 1.25914 1.21809 1.17769 0.86866 0.91478 0.91615 1.52965 1.38179 1.25862 1.60348 1.00740 0.71391 0.72190 0.72717 1.93637 1.46942 1.83875 1.69969 1.93569 1.84509 1.71865 1.43507 1.35197 1.13801 1.12809 1.07781 1.23132 0.94963 0.95470 0.93050 1.20720 1.05588 1.09210 0.92714 1.19344 0.76531 0.75391 0.87104 1.90913 1.58099 1.51802 1.43277 1.84474 1.48816 1.57541 1.40308 1.26253 0.92415 0.92881 0.83546 1.84122 1.36912 1.43366 1.35170 1.21587 1.02888 0.95924 1.08212 0.89626 0.86257 0.81911 0.72220 0.79677 0.69786 0.70797 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.61 10.92 21.84 0.24 -38.37 16 2 C 0.04 1.85 5.20 85.29 0.44 2.29 16 3 Si 0.98 34.65 29.59 68.60 2.03 36.68 16 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 5 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 6 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 7 C -0.48 -23.48 9.12 23.52 0.21 -23.27 16 8 H 0.09 4.05 7.90 -2.91 -0.02 4.02 16 9 C 0.12 5.82 5.60 -21.12 -0.12 5.70 16 10 C -0.29 -13.03 9.85 22.60 0.22 -12.81 16 11 C 0.14 5.62 11.10 84.26 0.94 6.55 16 12 N -0.60 -26.33 8.03 -194.48 -1.56 -27.89 16 13 C 0.35 15.44 7.33 132.90 0.97 16.42 16 14 N -1.02 -37.42 5.85 -55.56 -0.32 -37.74 16 15 S 2.74 95.79 5.52 -56.49 -0.31 95.48 16 16 O -0.95 -33.06 17.81 -128.00 -2.28 -35.34 16 17 O -0.94 -39.27 16.89 -127.88 -2.16 -41.43 16 18 C -0.57 -17.80 6.91 66.89 0.46 -17.34 16 19 C -0.04 -1.28 10.70 23.66 0.25 -1.02 16 20 C -0.28 -6.82 6.31 -19.00 -0.12 -6.94 16 21 C 0.57 12.74 8.33 70.19 0.58 13.33 16 22 O -0.55 -15.90 17.77 19.72 0.35 -15.55 16 23 O -0.50 -6.48 13.28 -56.77 -0.75 -7.23 16 24 C 0.12 2.59 11.94 67.41 0.80 3.39 16 25 O -0.11 -3.10 10.25 4.67 0.05 -3.06 16 26 C -0.26 -12.52 8.63 23.01 0.20 -12.32 16 27 H 0.29 12.57 8.29 -92.71 -0.77 11.80 16 28 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.16 5.40 8.06 -2.91 -0.02 5.38 16 30 H 0.44 13.71 8.82 -96.74 -0.85 12.86 16 31 H 0.19 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.44 1.65 9.11 -74.05 -0.67 0.98 16 33 H 0.28 2.57 8.06 -2.92 -0.02 2.54 16 34 H 0.12 5.95 6.20 -2.91 -0.02 5.93 16 Total: -1.00 -72.09 330.79 -0.18 -72.27 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.31 Total: 28.20 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.85 Total: -26.02 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -1.65 Total: -104.01 kcal Atomic # 8 Polarization: -97.81 SS G_CDS: -4.80 Total: -102.60 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.03 Total: 36.68 kcal Atomic # 16 Polarization: 95.79 SS G_CDS: -0.31 Total: 95.48 kcal Total: -72.09 -0.18 -72.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610624293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.299 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds