Wall clock time and date at job start Tue Mar 31 2020 20:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46742 * 137.18369 * 3 2 1 5 5 C 1.36914 * 119.99955 * 273.73664 * 4 3 2 6 6 H 1.07999 * 120.00008 * 190.26885 * 5 4 3 7 7 C 1.39011 * 119.99739 * 10.27402 * 5 4 3 8 8 N 1.31379 * 120.00634 * 15.99278 * 7 5 4 9 9 Si 1.86802 * 119.99682 * 195.99660 * 7 5 4 10 10 H 1.48503 * 109.47314 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47304 * 119.99762 * 9 7 5 12 12 H 1.48498 * 109.47262 * 239.99969 * 9 7 5 13 13 C 1.34777 * 120.00151 * 93.74448 * 4 3 2 14 14 O 1.21633 * 120.00056 * 184.94976 * 13 4 3 15 15 C 1.47337 * 119.99838 * 4.94793 * 13 4 3 16 16 C 1.39951 * 120.17934 * 305.59840 * 15 13 4 17 17 C 1.37753 * 120.03621 * 180.27621 * 16 15 13 18 18 Br 1.89097 * 119.80415 * 179.73982 * 17 16 15 19 19 C 1.38698 * 120.39123 * 359.72346 * 17 16 15 20 20 C 1.38473 * 120.35297 * 359.97346 * 19 17 16 21 21 N 1.40017 * 120.02340 * 180.02562 * 20 19 17 22 22 C 1.39558 * 119.95801 * 0.02562 * 20 19 17 23 23 N 1.39206 * 120.19278 * 180.02562 * 22 20 19 24 24 H 1.08997 * 109.47112 * 17.18380 * 3 2 1 25 25 H 1.09001 * 109.47197 * 257.18254 * 3 2 1 26 26 H 0.96999 * 120.00839 * 180.02562 * 8 7 5 27 27 H 1.08002 * 119.97916 * 359.97438 * 16 15 13 28 28 H 1.08002 * 119.82257 * 180.02562 * 19 17 16 29 29 H 0.96999 * 120.00638 * 179.97438 * 21 20 19 30 30 H 0.97003 * 119.99684 * 359.97438 * 21 20 19 31 31 H 0.96995 * 119.99980 * 354.49418 * 23 22 20 32 32 H 0.96998 * 119.99653 * 174.22289 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.0141 -0.9388 5 6 3.2512 0.7023 -2.2629 6 1 3.7629 1.3875 -2.9225 7 6 2.7503 -0.4961 -2.7582 8 7 1.8702 -1.1784 -2.0611 9 14 3.3285 -1.1363 -4.4150 10 1 4.3141 -0.1891 -4.9953 11 1 3.9650 -2.4662 -4.2371 12 1 2.1659 -1.2624 -5.3302 13 6 3.3917 2.2533 -0.4990 14 8 3.7102 3.1198 -1.2910 15 6 3.3294 2.5583 0.9411 16 6 2.1598 2.2999 1.6650 17 6 2.1029 2.5915 3.0101 18 35 0.5169 2.2465 3.9803 19 6 3.2021 3.1363 3.6571 20 6 4.3695 3.3927 2.9579 21 7 5.4752 3.9423 3.6181 22 6 4.4433 3.1029 1.5948 23 7 5.6147 3.3582 0.8872 24 1 2.9718 -0.9809 -0.3036 25 1 2.9712 0.2288 1.0021 26 1 1.5209 -2.0148 -2.4065 27 1 1.2999 1.8761 1.1677 28 1 3.1475 3.3610 4.7121 29 1 6.2930 4.1215 3.1281 30 1 5.4234 4.1439 4.5655 31 1 6.3544 3.8114 1.3211 32 1 5.6925 3.0794 -0.0386 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113971.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:37 Heat of formation + Delta-G solvation = 46.945140 kcal Electronic energy + Delta-G solvation = -21211.681895 eV Core-core repulsion = 17833.308661 eV Total energy + Delta-G solvation = -3378.373234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02890 -38.19669 -35.87572 -34.81187 -34.30216 -33.66103 -31.93392 -30.77846 -29.17252 -27.45084 -27.16712 -25.24461 -23.02991 -21.43179 -19.59094 -18.03492 -17.79868 -16.95700 -16.78564 -16.14828 -15.66350 -15.18545 -14.64609 -14.29682 -14.19385 -13.83932 -13.54929 -13.15704 -12.96868 -12.81345 -11.99074 -11.60951 -11.53881 -11.43476 -11.33946 -11.17695 -11.14635 -10.68389 -10.48609 -10.39939 -10.32491 -9.97122 -9.52866 -9.32913 -8.73805 -8.18682 -7.95250 -6.84187 -6.54790 -4.04942 1.40758 1.69853 2.00461 3.04599 3.18194 3.23849 3.48354 3.70337 3.82736 4.02119 4.09689 4.14294 4.22616 4.73431 4.88244 5.10564 5.38755 5.45764 5.50957 5.75718 5.88151 6.01745 6.18298 6.36676 6.56380 6.65719 6.77961 7.28307 7.38823 7.70860 7.74184 7.79462 7.98816 8.21557 8.89419 8.92877 9.12284 9.65961 10.47291 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.005136 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.797333 B = 5450.234443 C = 7124.202555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.256 3.744 3 C 0.219 3.781 4 N -0.429 5.429 5 C -0.308 4.308 6 H 0.113 0.887 7 C 0.030 3.970 8 N -0.879 5.879 9 Si 0.935 3.065 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.493 3.507 14 O -0.574 6.574 15 C -0.141 4.141 16 C -0.070 4.070 17 C -0.104 4.104 18 Br -0.065 7.065 19 C -0.122 4.122 20 C 0.141 3.859 21 N -0.883 5.883 22 C 0.213 3.787 23 N -0.861 5.861 24 H 0.130 0.870 25 H 0.084 0.916 26 H 0.276 0.724 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.391 0.609 30 H 0.398 0.602 31 H 0.389 0.611 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.844 4.590 14.042 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.062 4.062 3 C 0.091 3.909 4 N -0.148 5.148 5 C -0.435 4.435 6 H 0.131 0.869 7 C -0.173 4.173 8 N -0.519 5.519 9 Si 0.761 3.239 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.282 3.718 14 O -0.458 6.458 15 C -0.151 4.151 16 C -0.093 4.093 17 C -0.186 4.186 18 Br 0.019 6.981 19 C -0.148 4.148 20 C 0.035 3.965 21 N -0.427 5.427 22 C 0.102 3.898 23 N -0.402 5.402 24 H 0.147 0.853 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.219 0.781 30 H 0.226 0.774 31 H 0.216 0.784 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.562 4.641 13.889 15.338 hybrid contribution 1.375 -0.226 -1.026 1.731 sum 5.937 4.415 12.863 14.839 Atomic orbital electron populations 1.80902 1.13370 1.09658 1.11641 1.28906 0.95104 0.91783 0.90374 1.18935 0.82156 0.96830 0.92931 1.43621 1.55050 1.07887 1.08200 1.19878 1.35069 1.04000 0.84522 0.86926 1.25330 0.94897 0.96833 1.00228 1.69697 1.26215 1.16664 1.39277 0.85716 0.78719 0.78698 0.80750 1.19081 1.20362 1.20753 1.17612 0.85183 0.82549 0.86481 1.90650 1.53764 1.45299 1.56110 1.19368 0.93312 1.07615 0.94843 1.21051 0.97680 0.98732 0.91835 1.20907 0.92863 1.10284 0.94579 1.96621 1.32450 1.95100 1.73888 1.20147 0.90986 1.04291 0.99395 1.16971 0.89193 1.00811 0.89481 1.42065 1.13665 1.74818 1.12138 1.17247 0.87433 0.96292 0.88813 1.42246 1.14369 1.67239 1.16370 0.85279 0.89855 0.91301 0.84994 0.85462 0.78059 0.77392 0.78362 0.75589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.63 18.53 42.15 0.78 -10.84 16 2 C 0.26 5.88 10.64 -20.76 -0.22 5.66 16 3 C 0.22 4.57 4.77 -6.83 -0.03 4.53 16 4 N -0.43 -9.99 2.59 -119.19 -0.31 -10.30 16 5 C -0.31 -7.74 9.44 -15.00 -0.14 -7.88 16 6 H 0.11 2.95 7.29 -52.49 -0.38 2.57 16 7 C 0.03 0.73 5.12 -17.46 -0.09 0.64 16 8 N -0.88 -21.71 8.50 55.50 0.47 -21.24 16 9 Si 0.93 19.34 29.58 -169.99 -5.03 14.31 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.49 11.15 6.36 -12.56 -0.08 11.07 16 14 O -0.57 -14.54 15.64 5.25 0.08 -14.46 16 15 C -0.14 -2.66 4.72 -104.83 -0.49 -3.16 16 16 C -0.07 -1.28 7.42 -39.12 -0.29 -1.57 16 17 C -0.10 -1.65 6.21 -39.59 -0.25 -1.89 16 18 Br -0.07 -0.96 33.68 -68.01 -2.29 -3.25 16 19 C -0.12 -1.64 9.61 -39.32 -0.38 -2.01 16 20 C 0.14 1.84 6.77 -83.54 -0.57 1.28 16 21 N -0.88 -7.80 9.09 32.52 0.30 -7.50 16 22 C 0.21 3.34 6.78 -83.29 -0.56 2.77 16 23 N -0.86 -11.69 8.89 32.69 0.29 -11.40 16 24 H 0.13 2.72 6.40 -51.93 -0.33 2.39 16 25 H 0.08 1.50 5.80 -51.93 -0.30 1.20 16 26 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 27 H 0.13 2.70 5.29 -52.49 -0.28 2.42 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.39 2.83 7.02 -40.82 -0.29 2.54 16 30 H 0.40 2.68 8.84 -40.82 -0.36 2.32 16 31 H 0.39 3.81 7.02 -40.82 -0.29 3.53 16 32 H 0.41 6.45 7.03 -40.82 -0.29 6.17 16 LS Contribution 296.70 15.07 4.47 4.47 Total: -1.00 -29.90 296.70 -6.41 -36.31 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -2.07 Total: 14.48 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -3.10 Total: 9.43 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 1.53 Total: -61.29 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.08 Total: -14.46 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -2.29 Total: -3.25 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.90 -6.41 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113971.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.256 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds