Wall clock time and date at job start Tue Mar 31 2020 21:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38625 * 119.81761 * 2 1 4 4 C 1.38046 * 120.42268 * 180.02562 * 3 2 1 5 5 Br 1.89099 * 119.97119 * 179.97438 * 4 3 2 6 6 C 1.39018 * 120.05310 * 359.74468 * 4 3 2 7 7 N 1.38923 * 120.17960 * 180.27764 * 6 4 3 8 8 C 1.40382 * 119.63637 * 0.50660 * 6 4 3 9 9 C 1.47323 * 120.20718 * 179.77091 * 8 6 4 10 10 O 1.21633 * 120.00210 * 48.24146 * 9 8 6 11 11 N 1.34780 * 120.00045 * 228.23918 * 9 8 6 12 12 C 1.36912 * 120.00163 * 176.49332 * 11 9 8 13 13 H 1.07997 * 119.99734 * 330.17294 * 12 11 9 14 14 C 1.39018 * 120.00152 * 150.17204 * 12 11 9 15 15 N 1.31385 * 119.99921 * 352.01199 * 14 12 11 16 16 Si 1.86798 * 119.99971 * 172.01038 * 14 12 11 17 17 H 1.48504 * 109.46918 * 269.99904 * 16 14 12 18 18 H 1.48501 * 109.47320 * 29.99845 * 16 14 12 19 19 H 1.48499 * 109.47124 * 150.00374 * 16 14 12 20 20 C 1.46504 * 120.00164 * 356.49121 * 11 9 8 21 21 C 1.52995 * 117.49899 * 133.60932 * 20 11 9 22 22 C 1.53000 * 117.49411 * 64.94787 * 20 11 9 23 23 C 1.37723 * 119.81476 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46999 * 269.98009 * 1 2 3 25 25 H 1.09005 * 109.46900 * 29.97514 * 1 2 3 26 26 H 1.08999 * 109.47298 * 149.97630 * 1 2 3 27 27 H 1.07995 * 119.79149 * 0.02562 * 3 2 1 28 28 H 0.97003 * 119.99466 * 186.98012 * 7 6 4 29 29 H 0.96997 * 120.00595 * 6.98243 * 7 6 4 30 30 H 0.97003 * 120.00196 * 175.02579 * 15 14 12 31 31 H 1.08999 * 115.54869 * 279.28359 * 20 11 9 32 32 H 1.08998 * 117.50056 * 0.02562 * 21 20 11 33 33 H 1.09006 * 117.49731 * 145.02323 * 21 20 11 34 34 H 1.09004 * 117.49744 * 214.97496 * 22 20 11 35 35 H 1.08991 * 117.50395 * 359.97438 * 22 20 11 36 36 H 1.07999 * 120.03498 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2027 0.0000 4 6 3.5767 1.2173 -0.0005 5 35 4.5040 2.8653 -0.0013 6 6 4.2856 0.0214 0.0043 7 7 5.6748 0.0331 0.0096 8 6 3.5900 -1.1979 -0.0011 9 6 4.3286 -2.4726 -0.0012 10 8 5.2375 -2.6489 0.7876 11 7 3.9971 -3.4435 -0.8753 12 6 4.7289 -4.5996 -0.9243 13 1 5.7786 -4.5853 -0.6711 14 6 4.1206 -5.7919 -1.2999 15 7 2.8170 -5.8438 -1.4555 16 14 5.1567 -7.3201 -1.5835 17 1 5.5781 -7.3754 -3.0064 18 1 6.3587 -7.2719 -0.7128 19 1 4.3569 -8.5280 -1.2569 20 6 2.8537 -3.2618 -1.7731 21 6 3.0505 -3.6164 -3.2483 22 6 2.9476 -2.1503 -2.8203 23 6 2.1918 -1.1949 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6500 2.1343 0.0004 28 1 6.1670 -0.7969 -0.0892 29 1 6.1525 0.8710 0.1120 30 1 2.4000 -6.6544 -1.7870 31 1 1.8755 -3.4585 -1.3342 32 1 4.0305 -3.9854 -3.5508 33 1 2.2016 -4.0462 -3.7801 34 1 2.0310 -1.6162 -3.0709 35 1 3.8597 -1.5541 -2.8411 36 1 1.6493 -2.1288 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626842538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:22 Heat of formation + Delta-G solvation = 25.034234 kcal Electronic energy + Delta-G solvation = -21854.497243 eV Core-core repulsion = 18578.714224 eV Total energy + Delta-G solvation = -3275.783019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85535 -37.98468 -36.19697 -34.76709 -33.06902 -31.94757 -31.26043 -30.41155 -29.10704 -25.60566 -25.30604 -23.23959 -21.61959 -21.33162 -20.93149 -18.90637 -17.13534 -16.79355 -16.61667 -16.09201 -15.18381 -14.52346 -14.15748 -13.97753 -13.93924 -13.71294 -13.52741 -13.02068 -12.77264 -12.57258 -12.17545 -11.97554 -11.56461 -11.30988 -11.11948 -10.90598 -10.73537 -10.67481 -10.50908 -10.36342 -10.15687 -10.07766 -9.83088 -9.39427 -8.88649 -8.54993 -8.28405 -7.72691 -7.14497 -6.34248 -3.98591 1.40459 1.79393 1.85668 3.13305 3.22913 3.27394 3.64148 4.05809 4.18724 4.22665 4.70663 4.74123 5.07096 5.11037 5.27504 5.44230 5.53239 5.62050 5.80905 5.83231 5.89667 5.99711 6.09329 6.16072 6.22412 6.34505 6.36008 6.57018 6.72797 6.86693 6.95116 7.07696 7.13190 7.50048 7.70370 8.02216 8.13639 8.43078 9.11009 9.33073 9.91019 10.69171 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.004152 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.430991 B = 6741.725017 C = 7465.740121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.153 4.153 3 C -0.038 4.038 4 C -0.180 4.180 5 Br -0.069 7.069 6 C 0.279 3.721 7 N -0.854 5.854 8 C -0.160 4.160 9 C 0.497 3.503 10 O -0.584 6.584 11 N -0.406 5.406 12 C -0.311 4.311 13 H 0.095 0.905 14 C 0.043 3.957 15 N -0.865 5.865 16 Si 0.920 3.080 17 H -0.278 1.278 18 H -0.269 1.269 19 H -0.283 1.283 20 C 0.129 3.871 21 C -0.144 4.144 22 C -0.211 4.211 23 C -0.021 4.021 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.125 0.875 28 H 0.412 0.588 29 H 0.395 0.605 30 H 0.268 0.732 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 14.449 -1.327 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.156 4.156 3 C -0.059 4.059 4 C -0.264 4.264 5 Br 0.015 6.985 6 C 0.166 3.834 7 N -0.394 5.394 8 C -0.169 4.169 9 C 0.286 3.714 10 O -0.470 6.470 11 N -0.122 5.122 12 C -0.438 4.438 13 H 0.113 0.887 14 C -0.162 4.162 15 N -0.502 5.502 16 Si 0.747 3.253 17 H -0.204 1.204 18 H -0.194 1.194 19 H -0.209 1.209 20 C 0.024 3.976 21 C -0.182 4.182 22 C -0.250 4.250 23 C -0.041 4.041 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.143 0.857 28 H 0.244 0.756 29 H 0.225 0.775 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.689 14.739 -0.948 15.012 hybrid contribution 0.503 -1.202 -0.291 1.335 sum -2.186 13.536 -1.239 13.768 Atomic orbital electron populations 1.20620 0.91007 1.02347 1.01767 1.19447 0.95913 0.92120 1.08157 1.20651 0.91070 0.97994 0.96144 1.20926 0.94634 0.88656 1.22177 1.96530 1.76816 1.26772 1.98342 1.17295 0.84551 0.91124 0.90381 1.42717 1.03116 1.13039 1.80491 1.19628 0.93820 0.92398 1.11057 1.17701 0.86724 0.84248 0.82737 1.90621 1.33833 1.81687 1.40817 1.42980 1.25967 1.14613 1.28684 1.19524 0.93791 0.83885 1.46650 0.88727 1.25317 0.95469 0.98517 0.96920 1.69878 1.08491 1.29040 1.42772 0.86016 0.79813 0.80830 0.78658 1.20377 1.19357 1.20856 1.21134 0.91034 0.98882 0.86560 1.22747 1.02313 0.94892 0.98217 1.23457 1.01991 0.92522 1.07009 1.21206 0.92394 0.97986 0.92470 0.91911 0.92124 0.91620 0.85715 0.75555 0.77497 0.92189 0.87730 0.89252 0.89777 0.89547 0.90052 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.00 36.01 0.36 -0.77 16 2 C -0.15 -2.23 5.87 -104.67 -0.61 -2.84 16 3 C -0.04 -0.54 9.41 -39.51 -0.37 -0.91 16 4 C -0.18 -2.79 6.24 -39.36 -0.25 -3.03 16 5 Br -0.07 -0.89 32.13 -68.01 -2.18 -3.07 16 6 C 0.28 5.00 6.74 -83.55 -0.56 4.43 16 7 N -0.85 -14.40 8.79 32.57 0.29 -14.12 16 8 C -0.16 -3.18 4.53 -104.80 -0.48 -3.66 16 9 C 0.50 11.95 6.55 -12.56 -0.08 11.87 16 10 O -0.58 -15.74 15.39 5.25 0.08 -15.65 16 11 N -0.41 -9.96 2.91 -108.97 -0.32 -10.27 16 12 C -0.31 -8.28 8.68 -14.99 -0.13 -8.41 16 13 H 0.10 2.64 7.57 -52.49 -0.40 2.24 16 14 C 0.04 1.10 4.85 -17.45 -0.08 1.01 16 15 N -0.86 -21.87 10.80 55.50 0.60 -21.27 16 16 Si 0.92 20.13 29.56 -169.99 -5.03 15.10 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 C 0.13 2.75 2.28 -67.93 -0.15 2.60 16 21 C -0.14 -2.88 8.65 -26.69 -0.23 -3.11 16 22 C -0.21 -3.85 8.67 -26.69 -0.23 -4.09 16 23 C -0.02 -0.36 7.35 -39.18 -0.29 -0.65 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.41 7.65 6.81 -40.82 -0.28 7.38 16 29 H 0.40 5.66 7.25 -40.82 -0.30 5.37 16 30 H 0.27 6.46 8.32 -40.82 -0.34 6.12 16 31 H 0.11 2.28 6.83 -51.93 -0.35 1.93 16 32 H 0.09 1.93 7.94 -51.93 -0.41 1.52 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.13 2.35 6.23 -52.49 -0.33 2.02 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -28.37 318.45 -9.03 -37.40 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -4.15 Total: 14.65 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -3.11 Total: -7.56 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.57 Total: -45.66 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.65 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -2.18 Total: -3.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.37 -9.03 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626842538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.432 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds