Wall clock time and date at job start Tue Mar 31 2020 21:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38625 * 119.81761 * 2 1 4 4 C 1.38046 * 120.42268 * 180.02562 * 3 2 1 5 5 Br 1.89099 * 119.97119 * 179.97438 * 4 3 2 6 6 C 1.39018 * 120.05310 * 359.74468 * 4 3 2 7 7 N 1.38923 * 120.17960 * 180.27764 * 6 4 3 8 8 C 1.40382 * 119.63637 * 0.50660 * 6 4 3 9 9 C 1.47323 * 120.20718 * 179.77091 * 8 6 4 10 10 O 1.21633 * 120.00210 * 48.24146 * 9 8 6 11 11 N 1.34780 * 120.00045 * 228.23918 * 9 8 6 12 12 C 1.36912 * 120.00163 * 176.49332 * 11 9 8 13 13 H 1.07997 * 119.99734 * 330.17294 * 12 11 9 14 14 C 1.39018 * 120.00152 * 150.17204 * 12 11 9 15 15 N 1.31385 * 119.99921 * 352.01199 * 14 12 11 16 16 Si 1.86798 * 119.99971 * 172.01038 * 14 12 11 17 17 H 1.48504 * 109.46918 * 269.99904 * 16 14 12 18 18 H 1.48501 * 109.47320 * 29.99845 * 16 14 12 19 19 H 1.48499 * 109.47124 * 150.00374 * 16 14 12 20 20 C 1.46504 * 120.00164 * 356.49121 * 11 9 8 21 21 C 1.52995 * 117.49899 * 133.60932 * 20 11 9 22 22 C 1.53000 * 117.49411 * 64.94787 * 20 11 9 23 23 C 1.37723 * 119.81476 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46999 * 269.98009 * 1 2 3 25 25 H 1.09005 * 109.46900 * 29.97514 * 1 2 3 26 26 H 1.08999 * 109.47298 * 149.97630 * 1 2 3 27 27 H 1.07995 * 119.79149 * 0.02562 * 3 2 1 28 28 H 0.97003 * 119.99466 * 186.98012 * 7 6 4 29 29 H 0.96997 * 120.00595 * 6.98243 * 7 6 4 30 30 H 0.97003 * 120.00196 * 175.02579 * 15 14 12 31 31 H 1.08999 * 115.54869 * 279.28359 * 20 11 9 32 32 H 1.08998 * 117.50056 * 0.02562 * 21 20 11 33 33 H 1.09006 * 117.49731 * 145.02323 * 21 20 11 34 34 H 1.09004 * 117.49744 * 214.97496 * 22 20 11 35 35 H 1.08991 * 117.50395 * 359.97438 * 22 20 11 36 36 H 1.07999 * 120.03498 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2027 0.0000 4 6 3.5767 1.2173 -0.0005 5 35 4.5040 2.8653 -0.0013 6 6 4.2856 0.0214 0.0043 7 7 5.6748 0.0331 0.0096 8 6 3.5900 -1.1979 -0.0011 9 6 4.3286 -2.4726 -0.0012 10 8 5.2375 -2.6489 0.7876 11 7 3.9971 -3.4435 -0.8753 12 6 4.7289 -4.5996 -0.9243 13 1 5.7786 -4.5853 -0.6711 14 6 4.1206 -5.7919 -1.2999 15 7 2.8170 -5.8438 -1.4555 16 14 5.1567 -7.3201 -1.5835 17 1 5.5781 -7.3754 -3.0064 18 1 6.3587 -7.2719 -0.7128 19 1 4.3569 -8.5280 -1.2569 20 6 2.8537 -3.2618 -1.7731 21 6 3.0505 -3.6164 -3.2483 22 6 2.9476 -2.1503 -2.8203 23 6 2.1918 -1.1949 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6500 2.1343 0.0004 28 1 6.1670 -0.7969 -0.0892 29 1 6.1525 0.8710 0.1120 30 1 2.4000 -6.6544 -1.7870 31 1 1.8755 -3.4585 -1.3342 32 1 4.0305 -3.9854 -3.5508 33 1 2.2016 -4.0462 -3.7801 34 1 2.0310 -1.6162 -3.0709 35 1 3.8597 -1.5541 -2.8411 36 1 1.6493 -2.1288 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626842538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:22 Heat of formation + Delta-G solvation = 8.763811 kcal Electronic energy + Delta-G solvation = -21855.202781 eV Core-core repulsion = 18578.714224 eV Total energy + Delta-G solvation = -3276.488558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36592 -39.52744 -37.92708 -36.06203 -34.91109 -33.35552 -32.90600 -31.72882 -30.29389 -27.24185 -26.65824 -24.75211 -23.16923 -22.98172 -22.28157 -20.50575 -18.86313 -18.21149 -17.96848 -17.73943 -17.05167 -16.08872 -15.88087 -15.41426 -15.28506 -15.06428 -14.79038 -14.56357 -14.26564 -13.92550 -13.61648 -13.27553 -12.93925 -12.90103 -12.60428 -12.56870 -12.26561 -12.19640 -12.07047 -11.84723 -11.58504 -11.31943 -11.24125 -11.00090 -10.68879 -10.29739 -9.66720 -9.59767 -8.43837 -8.26582 -5.99962 0.09643 0.52311 0.67195 1.37545 1.41506 1.51360 2.01956 2.26845 2.74446 2.87169 2.98135 3.10689 3.28408 3.76088 4.01314 4.14488 4.22420 4.33858 4.40553 4.46616 4.58008 4.68861 4.85359 4.99504 5.02423 5.03917 5.13239 5.25681 5.33347 5.38304 5.43549 5.47863 5.68466 5.87926 6.12898 6.34122 6.54302 6.76014 7.17620 7.45588 8.03879 8.74022 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.004152 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.430991 B = 6741.725017 C = 7465.740121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.143 4.143 3 C -0.025 4.025 4 C -0.183 4.183 5 Br -0.041 7.041 6 C 0.264 3.736 7 N -0.855 5.855 8 C -0.189 4.189 9 C 0.490 3.510 10 O -0.629 6.629 11 N -0.417 5.417 12 C -0.345 4.345 13 H 0.066 0.934 14 C 0.016 3.984 15 N -0.875 5.875 16 Si 0.977 3.023 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.274 1.274 20 C 0.114 3.886 21 C -0.146 4.146 22 C -0.174 4.174 23 C -0.027 4.027 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.160 0.840 28 H 0.401 0.599 29 H 0.405 0.595 30 H 0.273 0.727 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 16.414 -2.190 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.146 4.146 3 C -0.045 4.045 4 C -0.267 4.267 5 Br 0.044 6.956 6 C 0.152 3.848 7 N -0.394 5.394 8 C -0.198 4.198 9 C 0.281 3.719 10 O -0.518 6.518 11 N -0.133 5.133 12 C -0.473 4.473 13 H 0.084 0.916 14 C -0.189 4.189 15 N -0.511 5.511 16 Si 0.801 3.199 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.199 1.199 20 C 0.009 3.991 21 C -0.184 4.184 22 C -0.212 4.212 23 C -0.046 4.046 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.178 0.822 28 H 0.231 0.769 29 H 0.237 0.763 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.750 16.733 -1.835 17.491 hybrid contribution 1.110 -1.697 0.029 2.028 sum -3.640 15.036 -1.806 15.575 Atomic orbital electron populations 1.20706 0.88198 1.03784 1.02951 1.19779 0.97750 0.90968 1.06095 1.21100 0.90554 0.99215 0.93649 1.21155 0.95451 0.89048 1.21079 1.96558 1.76565 1.24263 1.98251 1.17434 0.84794 0.91507 0.91087 1.42679 1.03108 1.12952 1.80664 1.19325 0.94695 0.90929 1.14812 1.18422 0.86170 0.85584 0.81725 1.90559 1.35863 1.82905 1.42427 1.43136 1.26481 1.14257 1.29460 1.19435 0.93228 0.85817 1.48807 0.91618 1.25906 0.96565 1.00216 0.96166 1.69935 1.09065 1.29765 1.42330 0.85182 0.78088 0.77836 0.78803 1.19077 1.20516 1.19945 1.21092 0.89597 1.01802 0.86579 1.22718 1.01701 0.96588 0.97378 1.23390 1.02904 0.91403 1.03474 1.21182 0.91357 0.98958 0.93148 0.90774 0.89501 0.91438 0.82224 0.76862 0.76316 0.91708 0.88413 0.91460 0.88239 0.86264 0.91026 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 10.00 71.24 0.71 -1.13 16 2 C -0.14 -3.73 5.87 -19.89 -0.12 -3.85 16 3 C -0.03 -0.61 9.41 22.32 0.21 -0.40 16 4 C -0.18 -5.26 6.24 22.41 0.14 -5.12 16 5 Br -0.04 -0.95 32.13 -20.37 -0.65 -1.60 16 6 C 0.26 9.39 6.74 38.73 0.26 9.65 16 7 N -0.85 -29.42 8.79 -50.85 -0.45 -29.87 16 8 C -0.19 -7.62 4.53 -19.98 -0.09 -7.71 16 9 C 0.49 24.78 6.55 86.63 0.57 25.35 16 10 O -0.63 -36.10 15.39 -4.13 -0.06 -36.17 16 11 N -0.42 -21.41 2.91 -616.92 -1.79 -23.20 16 12 C -0.35 -19.34 8.68 84.09 0.73 -18.61 16 13 H 0.07 3.95 7.57 -2.91 -0.02 3.93 16 14 C 0.02 0.83 4.85 84.95 0.41 1.24 16 15 N -0.87 -44.64 10.80 21.68 0.23 -44.41 16 16 Si 0.98 42.06 29.56 68.60 2.03 44.09 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 C 0.11 4.92 2.28 44.99 0.10 5.02 16 21 C -0.15 -5.83 8.65 30.62 0.26 -5.57 16 22 C -0.17 -6.15 8.67 30.62 0.27 -5.89 16 23 C -0.03 -0.91 7.35 22.53 0.17 -0.75 16 24 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.09 1.19 8.08 -2.38 -0.02 1.17 16 26 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 27 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.40 15.77 6.81 -92.71 -0.63 15.14 16 29 H 0.41 11.59 7.25 -92.71 -0.67 10.92 16 30 H 0.27 13.09 8.32 -92.71 -0.77 12.31 16 31 H 0.10 4.32 6.83 -2.39 -0.02 4.30 16 32 H 0.07 2.97 7.94 -2.39 -0.02 2.95 16 33 H 0.10 3.61 8.14 -2.38 -0.02 3.59 16 34 H 0.12 3.44 8.14 -2.38 -0.02 3.42 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.12 4.34 6.23 -2.91 -0.02 4.32 16 Total: -1.00 -64.24 318.45 2.76 -61.48 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -0.17 Total: 37.42 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 3.62 Total: -7.76 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -2.00 Total: -97.47 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.06 Total: -36.17 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 35 Polarization: -0.95 SS G_CDS: -0.65 Total: -1.60 kcal Total: -64.24 2.76 -61.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626842538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.248 kcal (2) G-P(sol) polarization free energy of solvation -64.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds