Wall clock time and date at job start Tue Mar 31 2020 20:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47484 * 160.98931 * 3 2 1 5 5 C 1.36929 * 119.99893 * 265.43026 * 4 3 2 6 6 H 1.07996 * 120.00049 * 140.63670 * 5 4 3 7 7 C 1.38946 * 119.99914 * 320.63076 * 5 4 3 8 8 N 1.31437 * 120.00098 * 158.24007 * 7 5 4 9 9 Si 1.86803 * 119.99820 * 338.24062 * 7 5 4 10 10 H 1.48498 * 109.46909 * 93.79241 * 9 7 5 11 11 H 1.48502 * 109.46683 * 213.79004 * 9 7 5 12 12 H 1.48493 * 109.47332 * 333.79154 * 9 7 5 13 13 C 1.34774 * 120.00288 * 85.42063 * 4 3 2 14 14 O 1.21847 * 120.00492 * 185.07942 * 13 4 3 15 15 C 1.41483 * 119.99651 * 5.08888 * 13 4 3 16 16 C 1.38853 * 126.81223 * 261.96298 * 15 13 4 17 17 Cl 1.73597 * 125.91341 * 359.96855 * 16 15 13 18 18 N 1.32380 * 108.17062 * 180.22969 * 16 15 13 19 19 C 1.33267 * 109.86138 * 359.56400 * 18 16 15 20 20 C 1.40542 * 131.75833 * 180.08982 * 19 18 16 21 21 C 1.36481 * 119.38450 * 180.37502 * 20 19 18 22 22 Cl 1.73601 * 120.21073 * 179.97438 * 21 20 19 23 23 C 1.40297 * 119.58128 * 0.02562 * 21 20 19 24 24 C 1.35230 * 120.09755 * 0.02562 * 23 21 20 25 25 N 1.35986 * 120.65290 * 0.02562 * 24 23 21 26 26 H 1.09007 * 109.47167 * 40.98904 * 3 2 1 27 27 H 1.09001 * 109.47108 * 280.98646 * 3 2 1 28 28 H 0.96998 * 120.00550 * 179.97438 * 8 7 5 29 29 H 1.08003 * 120.30398 * 0.38340 * 20 19 18 30 30 H 1.08004 * 119.94912 * 180.02562 * 23 21 20 31 31 H 1.08003 * 119.66741 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3067 -0.4499 5 6 3.4130 1.5022 -1.7675 6 1 3.1619 2.4348 -2.2507 7 6 4.0581 0.5008 -2.4828 8 7 3.9890 0.4818 -3.7952 9 14 5.0237 -0.8185 -1.5791 10 1 4.1527 -1.9989 -1.3486 11 1 6.1965 -1.2207 -2.3965 12 1 5.4895 -0.2846 -0.2741 13 6 3.2322 2.3158 0.4330 14 8 3.5487 3.4265 0.0447 15 6 3.0079 2.0854 1.8108 16 6 1.8460 2.3561 2.5213 17 17 0.3921 3.0465 1.8708 18 7 2.0410 2.0018 3.7818 19 6 3.2688 1.5046 3.9277 20 6 3.9458 0.9969 5.0498 21 6 5.2284 0.5509 4.9128 22 17 6.0850 -0.0799 6.2847 23 6 5.8506 0.6064 3.6566 24 6 5.1818 1.0996 2.5898 25 7 3.9040 1.5468 2.7188 26 1 2.9717 -0.7749 -0.6741 27 1 2.9714 -0.1950 1.0088 28 1 4.4396 -0.2170 -4.2946 29 1 3.4556 0.9598 6.0114 30 1 6.8653 0.2547 3.5414 31 1 5.6676 1.1395 1.6260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632144809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:58 Heat of formation + Delta-G solvation = 103.454831 kcal Electronic energy + Delta-G solvation = -24336.042309 eV Core-core repulsion = 20479.423275 eV Total energy + Delta-G solvation = -3856.619034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.008 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.13196 -39.27433 -38.04647 -36.88592 -36.37292 -36.28471 -34.88413 -33.83787 -32.42320 -30.61373 -29.42970 -28.00300 -25.75628 -24.16447 -23.34109 -22.35826 -20.16883 -18.78097 -17.97300 -17.50856 -17.08592 -16.77747 -16.53067 -15.84782 -15.67789 -15.16825 -14.70044 -14.36920 -13.92195 -13.80069 -13.39784 -13.27437 -13.03167 -12.69922 -12.63278 -12.57975 -12.43723 -12.03468 -11.70063 -11.52507 -11.30003 -11.25841 -11.12513 -10.75301 -10.63614 -10.39488 -10.26463 -9.58481 -9.19821 -8.97396 -8.30754 -8.01261 -6.72057 -4.35945 0.27004 0.65393 1.48972 1.62761 2.17769 2.30349 2.72728 2.86111 2.86683 2.93664 3.04964 3.17678 3.24737 3.79836 3.93188 4.12392 4.29801 4.34347 4.36318 4.62881 4.78780 4.90079 5.03883 5.18560 5.29956 5.48741 5.52603 5.55667 5.85927 5.95053 6.59346 7.10957 7.35231 7.81668 7.92410 8.05471 8.51631 8.88132 9.20506 10.38392 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.005579 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.556371 B = 5017.836849 C = 6605.504884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.198 3.802 3 C 0.182 3.818 4 N -0.441 5.441 5 C -0.329 4.329 6 H 0.116 0.884 7 C 0.069 3.931 8 N -0.840 5.840 9 Si 0.860 3.140 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.260 1.260 13 C 0.539 3.461 14 O -0.517 6.517 15 C -0.067 4.067 16 C 0.152 3.848 17 Cl 0.025 6.975 18 N -0.472 5.472 19 C 0.245 3.755 20 C -0.067 4.067 21 C -0.013 4.013 22 Cl -0.043 7.043 23 C -0.136 4.136 24 C 0.087 3.913 25 N -0.336 5.336 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.280 0.720 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 -4.621 16.066 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.164 5.164 5 C -0.455 4.455 6 H 0.133 0.867 7 C -0.141 4.141 8 N -0.474 5.474 9 Si 0.686 3.314 10 H -0.193 1.193 11 H -0.200 1.200 12 H -0.185 1.185 13 C 0.325 3.675 14 O -0.394 6.394 15 C -0.184 4.184 16 C -0.011 4.011 17 Cl 0.054 6.946 18 N -0.193 5.193 19 C 0.003 3.997 20 C -0.088 4.088 21 C -0.046 4.046 22 Cl -0.014 7.014 23 C -0.157 4.157 24 C -0.036 4.036 25 N -0.010 5.010 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.918 -3.996 16.236 17.173 hybrid contribution 1.406 -0.883 -0.249 1.678 sum 5.323 -4.879 15.986 17.541 Atomic orbital electron populations 1.81048 1.12728 1.07312 1.08652 1.29635 0.95523 0.93866 0.93105 1.19439 0.81984 0.91128 1.01943 1.43597 1.55968 1.07718 1.09105 1.19074 1.38655 1.05621 0.82163 0.86655 1.25380 0.95976 0.97504 0.95194 1.69740 1.38362 1.33258 1.06021 0.87217 0.81413 0.81662 0.81149 1.19339 1.19987 1.18473 1.15368 0.83508 0.86617 0.81972 1.90814 1.47924 1.21894 1.78778 1.20232 0.90881 1.13738 0.93542 1.21296 0.89345 1.00916 0.89569 1.98424 1.31374 1.81612 1.83222 1.70086 1.13330 1.18567 1.17345 1.20320 0.89319 1.04138 0.85877 1.20012 0.92418 0.98917 0.97422 1.20528 0.93033 1.01273 0.89746 1.98400 1.76325 1.84938 1.41709 1.20716 1.02057 1.03432 0.89491 1.21893 0.82547 0.97004 1.02160 1.42685 1.10531 1.37880 1.09872 0.86315 0.88827 0.90881 0.81683 0.81568 0.80136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.63 18.54 42.15 0.78 -7.85 16 2 C 0.20 3.89 15.70 -20.76 -0.33 3.57 16 3 C 0.18 3.37 4.34 -6.83 -0.03 3.34 16 4 N -0.44 -9.59 2.11 -121.22 -0.26 -9.84 16 5 C -0.33 -8.21 9.34 -15.01 -0.14 -8.35 16 6 H 0.12 3.30 7.90 -52.49 -0.41 2.89 16 7 C 0.07 1.65 5.27 -17.46 -0.09 1.55 16 8 N -0.84 -21.62 13.96 55.50 0.77 -20.85 16 9 Si 0.86 16.52 25.16 -169.99 -4.28 12.25 16 10 H -0.27 -4.74 6.63 56.52 0.37 -4.37 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.26 -4.45 7.03 56.52 0.40 -4.05 16 13 C 0.54 11.71 6.92 -15.03 -0.10 11.61 16 14 O -0.52 -13.01 16.96 5.06 0.09 -12.93 16 15 C -0.07 -1.25 4.71 -83.40 -0.39 -1.64 16 16 C 0.15 2.82 7.78 -17.09 -0.13 2.69 16 17 Cl 0.03 0.46 29.12 -51.86 -1.51 -1.05 16 18 N -0.47 -8.03 11.25 -9.36 -0.11 -8.13 16 19 C 0.24 3.57 7.77 -156.00 -1.21 2.35 16 20 C -0.07 -0.72 9.88 -39.35 -0.39 -1.11 16 21 C -0.01 -0.12 6.33 -39.44 -0.25 -0.37 16 22 Cl -0.04 -0.34 28.97 -51.86 -1.50 -1.84 16 23 C -0.14 -1.24 9.81 -39.88 -0.39 -1.64 16 24 C 0.09 1.06 10.82 -16.78 -0.18 0.88 16 25 N -0.34 -5.17 2.76 -60.10 -0.17 -5.34 16 26 H 0.12 2.16 3.67 -51.93 -0.19 1.96 16 27 H 0.09 1.47 6.82 -51.93 -0.35 1.12 16 28 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.18 2.14 7.99 -52.48 -0.42 1.72 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -29.30 319.06 -6.40 -35.70 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -1.39 Total: 2.19 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -3.64 Total: 12.88 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 1.03 Total: -52.01 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 16.52 SS G_CDS: -4.28 Total: 12.25 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -3.01 Total: -2.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.30 -6.40 -35.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632144809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.155 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds