Wall clock time and date at job start Tue Mar 31 2020 20:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47484 * 160.98931 * 3 2 1 5 5 C 1.36929 * 119.99893 * 265.43026 * 4 3 2 6 6 H 1.07996 * 120.00049 * 140.63670 * 5 4 3 7 7 C 1.38946 * 119.99914 * 320.63076 * 5 4 3 8 8 N 1.31437 * 120.00098 * 158.24007 * 7 5 4 9 9 Si 1.86803 * 119.99820 * 338.24062 * 7 5 4 10 10 H 1.48498 * 109.46909 * 93.79241 * 9 7 5 11 11 H 1.48502 * 109.46683 * 213.79004 * 9 7 5 12 12 H 1.48493 * 109.47332 * 333.79154 * 9 7 5 13 13 C 1.34774 * 120.00288 * 85.42063 * 4 3 2 14 14 O 1.21847 * 120.00492 * 185.07942 * 13 4 3 15 15 C 1.41483 * 119.99651 * 5.08888 * 13 4 3 16 16 C 1.38853 * 126.81223 * 261.96298 * 15 13 4 17 17 Cl 1.73597 * 125.91341 * 359.96855 * 16 15 13 18 18 N 1.32380 * 108.17062 * 180.22969 * 16 15 13 19 19 C 1.33267 * 109.86138 * 359.56400 * 18 16 15 20 20 C 1.40542 * 131.75833 * 180.08982 * 19 18 16 21 21 C 1.36481 * 119.38450 * 180.37502 * 20 19 18 22 22 Cl 1.73601 * 120.21073 * 179.97438 * 21 20 19 23 23 C 1.40297 * 119.58128 * 0.02562 * 21 20 19 24 24 C 1.35230 * 120.09755 * 0.02562 * 23 21 20 25 25 N 1.35986 * 120.65290 * 0.02562 * 24 23 21 26 26 H 1.09007 * 109.47167 * 40.98904 * 3 2 1 27 27 H 1.09001 * 109.47108 * 280.98646 * 3 2 1 28 28 H 0.96998 * 120.00550 * 179.97438 * 8 7 5 29 29 H 1.08003 * 120.30398 * 0.38340 * 20 19 18 30 30 H 1.08004 * 119.94912 * 180.02562 * 23 21 20 31 31 H 1.08003 * 119.66741 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3067 -0.4499 5 6 3.4130 1.5022 -1.7675 6 1 3.1619 2.4348 -2.2507 7 6 4.0581 0.5008 -2.4828 8 7 3.9890 0.4818 -3.7952 9 14 5.0237 -0.8185 -1.5791 10 1 4.1527 -1.9989 -1.3486 11 1 6.1965 -1.2207 -2.3965 12 1 5.4895 -0.2846 -0.2741 13 6 3.2322 2.3158 0.4330 14 8 3.5487 3.4265 0.0447 15 6 3.0079 2.0854 1.8108 16 6 1.8460 2.3561 2.5213 17 17 0.3921 3.0465 1.8708 18 7 2.0410 2.0018 3.7818 19 6 3.2688 1.5046 3.9277 20 6 3.9458 0.9969 5.0498 21 6 5.2284 0.5509 4.9128 22 17 6.0850 -0.0799 6.2847 23 6 5.8506 0.6064 3.6566 24 6 5.1818 1.0996 2.5898 25 7 3.9040 1.5468 2.7188 26 1 2.9717 -0.7749 -0.6741 27 1 2.9714 -0.1950 1.0088 28 1 4.4396 -0.2170 -4.2946 29 1 3.4556 0.9598 6.0114 30 1 6.8653 0.2547 3.5414 31 1 5.6676 1.1395 1.6260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632144809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:58 Heat of formation + Delta-G solvation = 85.920621 kcal Electronic energy + Delta-G solvation = -24336.802649 eV Core-core repulsion = 20479.423275 eV Total energy + Delta-G solvation = -3857.379375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.008 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.28624 -40.89400 -39.05708 -38.02796 -37.99910 -37.33832 -36.59872 -34.92946 -34.20840 -31.63062 -30.68901 -29.60987 -27.34729 -25.20225 -24.58584 -23.60096 -21.55790 -20.46112 -19.36561 -18.61513 -18.46277 -18.08889 -17.77520 -17.19668 -17.01984 -16.31137 -15.90305 -15.84404 -15.50728 -15.35839 -14.65778 -14.45879 -14.34917 -14.21735 -13.99296 -13.72145 -13.63513 -13.45087 -13.25700 -12.79287 -12.68521 -12.46765 -12.30338 -12.14279 -11.82763 -11.72439 -11.52724 -11.26070 -10.90347 -10.13163 -10.07318 -9.15643 -8.55198 -6.29244 -0.63669 -0.41974 0.28531 0.73588 0.87249 1.09483 1.23703 1.31507 1.36412 1.46192 1.63065 1.75186 2.07617 2.17131 2.53523 2.72499 2.90775 3.02953 3.30885 3.47188 3.59453 3.80847 3.84083 3.94656 3.99430 4.25149 4.63450 4.68954 4.74678 5.00625 5.34315 5.56892 5.94260 6.15615 6.25056 6.36198 6.67581 7.00891 7.44524 8.59899 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.005579 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.556371 B = 5017.836849 C = 6605.504884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.205 3.795 3 C 0.184 3.816 4 N -0.444 5.444 5 C -0.349 4.349 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.892 5.892 9 Si 0.920 3.080 10 H -0.233 1.233 11 H -0.275 1.275 12 H -0.222 1.222 13 C 0.552 3.448 14 O -0.567 6.567 15 C -0.102 4.102 16 C 0.148 3.852 17 Cl 0.009 6.991 18 N -0.495 5.495 19 C 0.254 3.746 20 C -0.071 4.071 21 C 0.006 3.994 22 Cl -0.016 7.016 23 C -0.102 4.102 24 C 0.059 3.941 25 N -0.334 5.334 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.286 0.714 29 H 0.188 0.812 30 H 0.208 0.792 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 -7.726 19.780 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.114 4.114 3 C 0.058 3.942 4 N -0.166 5.166 5 C -0.476 4.476 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.527 5.527 9 Si 0.739 3.261 10 H -0.158 1.158 11 H -0.201 1.201 12 H -0.144 1.144 13 C 0.340 3.660 14 O -0.447 6.447 15 C -0.220 4.220 16 C -0.016 4.016 17 Cl 0.038 6.962 18 N -0.217 5.217 19 C 0.013 3.987 20 C -0.092 4.092 21 C -0.028 4.028 22 Cl 0.013 6.987 23 C -0.122 4.122 24 C -0.064 4.064 25 N -0.006 5.006 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.096 0.904 29 H 0.205 0.795 30 H 0.225 0.775 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.667 -7.116 19.972 22.225 hybrid contribution 0.685 0.089 -1.248 1.426 sum 7.351 -7.028 18.724 21.307 Atomic orbital electron populations 1.81043 1.13466 1.07829 1.09507 1.29881 0.95834 0.93299 0.92413 1.19676 0.81105 0.89372 1.04014 1.43519 1.56078 1.09107 1.07885 1.18577 1.40967 1.04255 0.83762 0.92853 1.26248 0.95895 1.00275 0.95780 1.69863 1.39381 1.35091 1.08319 0.86255 0.79689 0.78903 0.81244 1.15786 1.20096 1.14430 1.15628 0.81578 0.85587 0.83177 1.90770 1.49855 1.23907 1.80153 1.19438 0.92326 1.17837 0.92359 1.21274 0.88910 1.01166 0.90281 1.98407 1.32323 1.81939 1.83571 1.70052 1.15006 1.20225 1.16420 1.20827 0.88651 1.02796 0.86400 1.20303 0.93008 0.98827 0.97078 1.20689 0.92445 0.98997 0.90648 1.98434 1.75528 1.84289 1.40422 1.21219 1.03006 0.99899 0.88049 1.22289 0.81668 0.98705 1.03711 1.42667 1.11189 1.37580 1.09134 0.85336 0.85177 0.90354 0.79451 0.77522 0.79811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -18.21 18.54 20.01 0.37 -17.84 16 2 C 0.21 7.98 15.70 89.44 1.40 9.39 16 3 C 0.18 6.54 4.34 84.57 0.37 6.91 16 4 N -0.44 -19.60 2.11 -655.58 -1.38 -20.98 16 5 C -0.35 -18.34 9.34 84.07 0.79 -17.55 16 6 H 0.05 3.38 7.90 -2.91 -0.02 3.36 16 7 C 0.02 1.14 5.27 84.92 0.45 1.59 16 8 N -0.89 -47.67 13.96 21.67 0.30 -47.37 16 9 Si 0.92 31.93 25.16 68.60 1.73 33.66 16 10 H -0.23 -6.93 6.63 99.48 0.66 -6.27 16 11 H -0.28 -9.67 7.11 99.48 0.71 -8.96 16 12 H -0.22 -6.31 7.03 99.48 0.70 -5.61 16 13 C 0.55 24.66 6.92 85.04 0.59 25.25 16 14 O -0.57 -30.22 16.96 -4.82 -0.08 -30.31 16 15 C -0.10 -3.80 4.71 39.04 0.18 -3.62 16 16 C 0.15 5.52 7.78 84.76 0.66 6.17 16 17 Cl 0.01 0.35 29.12 -2.72 -0.08 0.27 16 18 N -0.50 -16.33 11.25 -183.54 -2.06 -18.40 16 19 C 0.25 6.75 7.77 133.94 1.04 7.79 16 20 C -0.07 -1.23 9.88 22.42 0.22 -1.01 16 21 C 0.01 0.07 6.33 22.36 0.14 0.22 16 22 Cl -0.02 -0.17 28.97 -2.72 -0.08 -0.24 16 23 C -0.10 -1.27 9.81 22.08 0.22 -1.05 16 24 C 0.06 1.20 10.82 83.36 0.90 2.10 16 25 N -0.33 -9.48 2.76 -344.07 -0.95 -10.43 16 26 H 0.13 4.30 3.67 -2.38 -0.01 4.29 16 27 H 0.13 3.68 6.82 -2.39 -0.02 3.67 16 28 H 0.29 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.18 3.64 7.99 -2.91 -0.02 3.62 16 Total: -1.00 -70.84 319.06 5.90 -64.94 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.18 Total: 10.51 kcal Atomic # 6 Polarization: 29.23 SS G_CDS: 6.96 Total: 36.18 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.72 Total: -115.01 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.08 Total: -30.31 kcal Atomic # 14 Polarization: 31.93 SS G_CDS: 1.73 Total: 33.66 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.16 Total: 0.03 kcal Total: -70.84 5.90 -64.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632144809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.863 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds