Wall clock time and date at job start Tue Mar 31 2020 20:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00079 * 2 1 4 4 H 1.48499 * 109.47132 * 269.99638 * 3 2 1 5 5 H 1.48500 * 109.47580 * 29.99998 * 3 2 1 6 6 H 1.48508 * 109.47144 * 149.99898 * 3 2 1 7 7 C 1.37877 * 119.99249 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99433 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00477 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97717 * 125.00274 * 10 9 7 12 12 C 1.35232 * 107.86692 * 180.02562 * 11 10 9 13 13 C 1.40417 * 107.86807 * 0.02562 * 12 11 10 14 14 N 1.40113 * 125.97818 * 179.97438 * 13 12 11 15 15 C 1.34768 * 119.99670 * 0.02562 * 14 13 12 16 16 O 1.21643 * 120.00388 * 359.97438 * 15 14 13 17 17 C 1.47243 * 119.99843 * 179.97438 * 15 14 13 18 18 C 1.36767 * 126.93567 * 359.68795 * 17 15 14 19 19 N 1.34740 * 108.40492 * 179.83919 * 18 17 15 20 20 H 0.97004 * 124.85625 * 180.21403 * 19 18 17 21 21 C 1.36456 * 110.29504 * 0.43841 * 19 18 17 22 22 Br 1.89098 * 125.58317 * 179.71213 * 21 19 18 23 23 C 1.34583 * 108.84210 * 359.73394 * 21 19 18 24 24 N 1.31234 * 108.04769 * 359.97438 * 13 12 11 25 25 H 0.97001 * 119.99657 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47257 * 60.00334 * 9 7 2 27 27 H 1.08996 * 109.47127 * 299.99977 * 9 7 2 28 28 H 1.08000 * 126.06913 * 359.97438 * 11 10 9 29 29 H 1.08001 * 126.06873 * 179.97438 * 12 11 10 30 30 H 0.97003 * 119.99631 * 180.02562 * 14 13 12 31 31 H 1.08002 * 125.79273 * 359.95679 * 18 17 15 32 32 H 1.08002 * 126.83623 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 2.2411 -4.6221 0.8969 12 6 3.2602 -5.4423 0.5541 13 6 3.8701 -4.9144 -0.5953 14 7 4.9669 -5.4646 -1.2716 15 6 5.5309 -6.6044 -0.8256 16 8 5.0881 -7.1553 0.1645 17 6 6.6832 -7.1830 -1.5366 18 6 7.2883 -6.6895 -2.6594 19 7 8.3052 -7.5093 -2.9899 20 1 8.8967 -7.3812 -3.7480 21 6 8.3810 -8.5484 -2.1087 22 35 9.6432 -9.9550 -2.1720 23 6 7.4100 -8.4086 -1.1873 24 7 3.2331 -3.8155 -0.9253 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5566 0.8903 28 1 1.5764 -4.7514 1.7382 29 1 3.5536 -6.3430 1.0728 30 1 5.3202 -5.0251 -2.0609 31 1 7.0011 -5.7936 -3.1899 32 1 7.2062 -9.0677 -0.3563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645567353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:52 Heat of formation + Delta-G solvation = 75.955189 kcal Electronic energy + Delta-G solvation = -19556.612243 eV Core-core repulsion = 16179.496979 eV Total energy + Delta-G solvation = -3377.115264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.41861 -41.97173 -40.07625 -36.17959 -35.25191 -33.12566 -32.73115 -32.06253 -30.92294 -29.50296 -28.41830 -25.45431 -24.25319 -22.42377 -21.84298 -21.40593 -20.35190 -19.47342 -18.65832 -18.07329 -17.38056 -16.93622 -16.50930 -16.09010 -15.71740 -15.26943 -15.15276 -14.92012 -14.49995 -14.21084 -14.11649 -13.78533 -13.63751 -13.36542 -12.91286 -12.72002 -12.27458 -12.06561 -12.01186 -11.60842 -11.55064 -11.36570 -10.95066 -10.70391 -10.08377 -9.71816 -9.43573 -9.05410 -8.31154 -6.45213 0.20803 0.49359 0.97290 1.21610 1.39982 1.40322 1.41824 1.52776 1.92353 2.20096 2.35223 2.53664 2.60012 3.00544 3.72506 3.92675 4.05779 4.23365 4.30237 4.48874 4.77005 4.84482 4.94635 4.96358 5.05649 5.19459 5.35300 5.52371 5.58738 5.82378 5.96603 6.26739 6.29586 6.37987 6.67183 7.06864 7.19984 7.24645 8.76419 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.031977 B = 0.002009 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.406626 B =13932.256585 C =14569.254984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.295 4.295 13 C 0.268 3.732 14 N -0.620 5.620 15 C 0.597 3.403 16 O -0.557 6.557 17 C -0.254 4.254 18 C 0.110 3.890 19 N -0.517 5.517 20 H 0.441 0.559 21 C -0.006 4.006 22 Br 0.021 6.979 23 C -0.103 4.103 24 N -0.343 5.343 25 H 0.272 0.728 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.200 0.800 29 H 0.165 0.835 30 H 0.424 0.576 31 H 0.223 0.777 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.550 -19.213 -8.426 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.326 4.326 13 C 0.014 3.986 14 N -0.269 5.269 15 C 0.388 3.612 16 O -0.435 6.435 17 C -0.265 4.265 18 C -0.031 4.031 19 N -0.115 5.115 20 H 0.283 0.717 21 C -0.194 4.194 22 Br 0.104 6.896 23 C -0.130 4.130 24 N -0.174 5.174 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.217 0.783 29 H 0.183 0.817 30 H 0.262 0.738 31 H 0.240 0.760 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 21.530 -18.986 -8.693 29.992 hybrid contribution 0.104 0.783 0.041 0.791 sum 21.634 -18.203 -8.652 29.567 Atomic orbital electron populations 1.70002 1.07231 1.28740 1.50020 1.25754 0.95854 1.02761 0.93939 0.85333 0.78344 0.78073 0.78577 1.19683 1.19830 1.19712 1.21398 0.93404 0.90916 1.52700 0.92868 1.19337 0.85687 0.81506 0.98105 1.48838 1.23865 1.20291 1.19681 1.23148 1.00475 0.88917 0.96728 1.21729 1.02170 1.06646 1.02084 1.19399 0.91567 0.93199 0.94485 1.42304 1.28670 1.25153 1.30731 1.17712 0.81935 0.78409 0.83171 1.90689 1.63919 1.61447 1.27407 1.19980 1.02237 1.01807 1.02458 1.22667 0.88262 0.96652 0.95504 1.41578 1.26781 1.18387 1.24780 0.71709 1.21792 1.03311 0.95332 0.98940 1.96819 1.53407 1.40787 1.98574 1.21947 0.94471 0.97008 0.99623 1.77237 1.04698 1.18015 1.17456 0.91870 0.95995 0.92455 0.78274 0.81725 0.73837 0.76019 0.83065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.12 13.29 21.45 0.28 -51.83 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.55 -30.72 9.23 25.60 0.24 -30.49 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.16 6.26 85.63 0.54 14.70 16 10 N -0.34 -16.30 3.67 -351.87 -1.29 -17.59 16 11 C 0.06 2.24 11.43 83.52 0.95 3.20 16 12 C -0.30 -11.86 9.60 22.11 0.21 -11.65 16 13 C 0.27 10.76 8.11 133.34 1.08 11.84 16 14 N -0.62 -18.56 5.44 -310.61 -1.69 -20.25 16 15 C 0.60 17.70 7.78 86.61 0.67 18.37 16 16 O -0.56 -20.67 14.09 -4.17 -0.06 -20.73 16 17 C -0.25 -5.35 6.29 -19.04 -0.12 -5.47 16 18 C 0.11 1.27 11.41 83.90 0.96 2.23 16 19 N -0.52 -4.82 5.91 -189.54 -1.12 -5.94 16 20 H 0.44 1.05 8.96 -92.71 -0.83 0.22 16 21 C -0.01 -0.09 7.61 83.14 0.63 0.54 16 22 Br 0.02 0.26 34.08 -20.37 -0.69 -0.44 16 23 C -0.10 -2.10 10.91 23.65 0.26 -1.84 16 24 N -0.34 -15.87 12.42 -54.47 -0.68 -16.54 16 25 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 2.92 8.07 -2.39 -0.02 2.90 16 28 H 0.20 6.36 8.06 -2.91 -0.02 6.34 16 29 H 0.17 6.49 5.91 -2.91 -0.02 6.48 16 30 H 0.42 9.37 7.77 -92.71 -0.72 8.65 16 31 H 0.22 0.78 7.45 -2.91 -0.02 0.76 16 32 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -74.28 312.38 2.32 -71.96 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.35 Total: 13.17 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.88 Total: 2.84 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.49 Total: -112.16 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.06 Total: -20.73 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 35 Polarization: 0.26 SS G_CDS: -0.69 Total: -0.44 kcal Total: -74.28 2.32 -71.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645567353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.918 kcal (2) G-P(sol) polarization free energy of solvation -74.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds