Wall clock time and date at job start Tue Mar 31 2020 20:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48508 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 299.99501 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99574 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 O 1.42895 * 109.47147 * 180.02562 * 12 10 9 14 14 C 1.36011 * 116.99925 * 179.97438 * 13 12 10 15 15 C 1.38805 * 120.04144 * 269.72496 * 14 13 12 16 16 F 1.35093 * 120.02593 * 359.97438 * 15 14 13 17 17 C 1.38543 * 119.95171 * 179.74182 * 15 14 13 18 18 F 1.35101 * 119.97737 * 180.24995 * 17 15 14 19 19 C 1.38442 * 120.04386 * 0.53252 * 17 15 14 20 20 N 1.48023 * 119.95507 * 179.74461 * 19 17 15 21 21 O 1.21806 * 119.99670 * 269.97276 * 20 19 17 22 22 O 1.21799 * 119.99995 * 89.97687 * 20 19 17 23 23 C 1.38438 * 120.08614 * 359.72206 * 19 17 15 24 24 F 1.35108 * 119.97723 * 180.02562 * 23 19 17 25 25 C 1.38535 * 120.04531 * 0.02562 * 23 19 17 26 26 F 1.35104 * 120.02274 * 180.02562 * 25 23 19 27 27 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 30 30 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 8 2.1725 -5.9490 0.0007 14 6 1.6527 -7.2059 0.0008 15 6 1.3920 -7.8499 1.2025 16 9 1.6548 -7.2290 2.3731 17 6 0.8575 -9.1281 1.2005 18 9 0.5987 -9.7534 2.3698 19 6 0.5938 -9.7672 0.0010 20 7 0.0280 -11.1350 0.0012 21 8 0.7700 -12.1010 0.0013 22 8 -1.1795 -11.2946 0.0012 23 6 0.8581 -9.1285 -1.1984 24 9 0.5994 -9.7542 -2.3677 25 6 1.3877 -7.8484 -1.2007 26 9 1.6450 -7.2254 -2.3716 27 1 -0.4850 0.8400 -0.0004 28 1 0.3535 -2.3907 0.0005 29 1 0.6170 -4.9209 0.8897 30 1 0.6175 -4.9205 -0.8902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652937789.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:48 Heat of formation + Delta-G solvation = -217.946898 kcal Electronic energy + Delta-G solvation = -28720.972971 eV Core-core repulsion = 23407.221880 eV Total energy + Delta-G solvation = -5313.751090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.040 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.48196 -51.41871 -50.45324 -50.44189 -43.66564 -41.52693 -40.20613 -38.84787 -38.05850 -36.09001 -33.47094 -33.05732 -31.95044 -30.11183 -27.90020 -26.50333 -25.28714 -24.59458 -21.67283 -21.39819 -21.02862 -20.59405 -20.37877 -20.10115 -19.15888 -18.75057 -18.71580 -18.45933 -18.38387 -17.78140 -17.75473 -17.51630 -17.02568 -16.72572 -16.69046 -16.58578 -16.13640 -16.00368 -15.45192 -15.35917 -14.76258 -14.75428 -14.05885 -13.89046 -13.58191 -13.47103 -13.07968 -12.96442 -12.80460 -12.62082 -12.48215 -12.12953 -11.79299 -11.59725 -11.06889 -10.58968 -10.57125 -10.13308 -8.54773 -6.04626 -1.80134 -1.46396 -1.13276 -0.57814 0.58825 1.02461 1.33128 1.42635 1.53838 1.62321 1.63846 1.84394 1.84878 2.28709 2.32557 2.66444 2.86344 2.94426 3.10995 3.19806 3.32919 3.78181 3.82762 4.06836 4.16019 4.21112 4.63504 5.35875 5.45253 5.89019 5.94271 6.45898 7.02000 7.37692 7.91854 8.62023 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.023690 B = 0.002677 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.653227 B =10458.608026 C =10940.065522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.555 5.555 10 C 0.435 3.565 11 O -0.620 6.620 12 C 0.061 3.939 13 O -0.301 6.301 14 C 0.133 3.867 15 C 0.101 3.899 16 F -0.088 7.088 17 C 0.167 3.833 18 F -0.089 7.089 19 C -0.060 4.060 20 N 0.017 4.983 21 O -0.111 6.111 22 O -0.106 6.106 23 C 0.167 3.833 24 F -0.089 7.089 25 C 0.101 3.899 26 F -0.088 7.088 27 H 0.281 0.719 28 H 0.402 0.598 29 H 0.117 0.883 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 -18.496 0.001 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.206 4.206 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.100 0.900 9 N -0.193 5.193 10 C 0.222 3.778 11 O -0.507 6.507 12 C -0.015 4.015 13 O -0.216 6.216 14 C 0.085 3.915 15 C 0.079 3.921 16 F -0.066 7.066 17 C 0.145 3.855 18 F -0.067 7.067 19 C -0.143 4.143 20 N 0.552 4.448 21 O -0.335 6.335 22 O -0.332 6.332 23 C 0.145 3.855 24 F -0.067 7.067 25 C 0.078 3.922 26 F -0.066 7.066 27 H 0.091 0.909 28 H 0.237 0.763 29 H 0.135 0.865 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.092 -17.525 0.002 17.796 hybrid contribution -0.314 0.488 -0.001 0.580 sum -3.406 -17.038 0.001 17.375 Atomic orbital electron populations 1.69647 1.06762 1.29676 1.49097 1.26031 0.96546 1.02348 0.95671 0.84867 0.78097 0.76945 0.78444 1.19776 1.19494 1.19502 1.19702 0.92859 0.83417 1.50601 0.90014 1.41700 1.09614 1.04045 1.63894 1.20060 0.88069 0.85400 0.84305 1.90567 1.15729 1.87638 1.56749 1.22725 0.90229 0.82424 1.06103 1.86243 1.32017 1.09641 1.93722 1.18277 0.95505 0.88488 0.89185 1.17019 1.02568 0.89884 0.82679 1.91708 1.90893 1.81114 1.42885 1.16100 0.99685 0.89526 0.80233 1.91725 1.90836 1.80846 1.43286 1.20180 1.13233 0.87509 0.93409 1.42891 1.01211 1.01413 0.99279 1.94655 1.58267 1.29736 1.50880 1.94650 0.96317 1.91696 1.50529 1.16099 0.99717 0.89492 0.80235 1.91728 1.90835 1.80839 1.43295 1.17023 1.02652 0.89805 0.82686 1.91712 1.91012 1.81011 1.42871 0.90937 0.76321 0.86535 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.81 13.05 21.66 0.28 -45.52 16 2 C 0.00 -0.24 5.50 84.93 0.47 0.23 16 3 Si 0.99 40.46 29.55 68.60 2.03 42.49 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.34 -17.96 9.68 84.04 0.81 -17.15 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.56 -26.13 5.29 -306.98 -1.62 -27.75 16 10 C 0.44 19.20 7.86 87.66 0.69 19.89 16 11 O -0.62 -33.44 16.08 15.96 0.26 -33.19 16 12 C 0.06 1.80 6.54 71.24 0.47 2.26 16 13 O -0.30 -9.01 9.32 -74.64 -0.70 -9.71 16 14 C 0.13 2.84 5.73 22.54 0.13 2.97 16 15 C 0.10 1.90 7.31 22.48 0.16 2.07 16 16 F -0.09 -1.94 17.02 44.97 0.77 -1.18 16 17 C 0.17 2.85 7.30 22.39 0.16 3.02 16 18 F -0.09 -1.62 17.00 44.97 0.76 -0.86 16 19 C -0.06 -1.06 6.17 36.47 0.22 -0.83 16 20 N 0.02 0.35 4.01 -46.23 -0.19 0.16 16 21 O -0.11 -2.38 19.26 18.88 0.36 -2.02 16 22 O -0.11 -2.24 19.26 18.89 0.36 -1.88 16 23 C 0.17 2.85 7.30 22.39 0.16 3.02 16 24 F -0.09 -1.62 17.00 44.97 0.76 -0.86 16 25 C 0.10 1.90 7.31 22.48 0.16 2.06 16 26 F -0.09 -1.94 17.02 44.97 0.77 -1.18 16 27 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.40 17.37 7.90 -92.71 -0.73 16.64 16 29 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -63.07 315.51 7.85 -55.22 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.56 Total: 8.73 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 3.45 Total: 17.54 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.53 Total: -73.11 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: 0.29 Total: -46.79 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 3.06 Total: -4.07 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -63.07 7.85 -55.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652937789.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.731 kcal (2) G-P(sol) polarization free energy of solvation -63.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds